Csor.00g299520 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g299520
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein RADIALIS-like 4
Location	Csor_Chr05: 1126162 .. 1126461 (-)
RNA-Seq Expression	Csor.00g299520
Synteny	Csor.00g299520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACAAGCCCTTTTAAATCTTCAGGCAGTTCTAGCTCCTCGTGGACGCCTAAGCAAAACAAAAAATTTGAGAACGCTCTGGCTTTATATCCCGAGGACACACCAGACCGGTGGCAAAAGGTGGCCAGGACAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCAAGATCTCATGCATATAGAATCTGGAAAGATACCTCTCCCCAACTACAAGCCCATTGTATCCAACGGTACAGTGTATGGTGATGAGCAGAGGTACCGAGCTTTCTACTCTTAG

mRNA sequence

ATGGCAACAAGCCCTTTTAAATCTTCAGGCAGTTCTAGCTCCTCGTGGACGCCTAAGCAAAACAAAAAATTTGAGAACGCTCTGGCTTTATATCCCGAGGACACACCAGACCGGTGGCAAAAGGTGGCCAGGACAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCAAGATCTCATGCATATAGAATCTGGAAAGATACCTCTCCCCAACTACAAGCCCATTGTATCCAACGGTACAGTGTATGGTGATGAGCAGAGGTACCGAGCTTTCTACTCTTAG

Coding sequence (CDS)

ATGGCAACAAGCCCTTTTAAATCTTCAGGCAGTTCTAGCTCCTCGTGGACGCCTAAGCAAAACAAAAAATTTGAGAACGCTCTGGCTTTATATCCCGAGGACACACCAGACCGGTGGCAAAAGGTGGCCAGGACAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCAAGATCTCATGCATATAGAATCTGGAAAGATACCTCTCCCCAACTACAAGCCCATTGTATCCAACGGTACAGTGTATGGTGATGAGCAGAGGTACCGAGCTTTCTACTCTTAG

Protein sequence

MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRYRAFYS

Homology

[Close]

BLAST of Csor.00g299520 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.7e-24
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 8  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMH 67
          +S SS S WT  QNK FE ALA+Y +DTPDRW  VA+ VGGKT EEVKRHYDILV+DL++
Sbjct: 4  NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68 IESGKIPLPNYKPIVSNGTVYGD 91
          IE+G++PLPNYK   SN     D
Sbjct: 64 IETGRVPLPNYKTFESNSRSIND 86

[Close]

BLAST of Csor.00g299520 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.3e-24
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 8  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMH 67
          SS SSSSSWT KQNK FE ALA+Y +DTPDRWQ VA+ VG K+AEEVKRHYDILV+DLM+
Sbjct: 4  SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMN 63

Query: 68 IESGKIPLPNYKPI 82
          IE   +PLP YK +
Sbjct: 64 IEQDLVPLPKYKTV 77

[Close]

BLAST of Csor.00g299520 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-23
Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 9  SGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHI 68
          S  SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++LVQD+  I
Sbjct: 7  SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSI 66

Query: 69 ESGKIPLPNYKPI--VSNGTVYGDEQRYR 96
          E+G +P PNY+     +NG +  +E+R R
Sbjct: 67 ENGHVPFPNYRTSGGCTNGRLSQEEKRMR 95

[Close]

BLAST of Csor.00g299520 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.9e-22
Identity = 48/88 (54.55%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 8  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMH 67
          S+  S   W+ K+NK FE ALA+Y +DTPDRW  VAR V G+T EEVK+HY+ILV+D+ +
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 68 IESGKIPLPNYKPIVSNGTVYGDEQRYR 96
          IESGK+P PNY+   + G +  DE+R+R
Sbjct: 63 IESGKVPFPNYR--TTGGNMKTDEKRFR 88

[Close]

BLAST of Csor.00g299520 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.7e-22
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 1  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60
          MA+    S G  S SWT KQNK FE ALA+Y +DTPDRW  VAR VGGKT EE KR YD+
Sbjct: 1  MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61 LVQDLMHIESGKIPLPNYKPIVSN---GTVYGDEQRYRA 97
          LV+D+  IE+G +P P+YK    N   G +  +E+R R+
Sbjct: 61 LVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRS 97

[Close]

BLAST of Csor.00g299520 vs. NCBI nr
Match: KAG6598451.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203 bits (516), Expect = 8.03e-66
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60
          MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI
Sbjct: 1  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRYRAFYS 99
          LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRYRAFYS
Sbjct: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRYRAFYS 99

[Close]

BLAST of Csor.00g299520 vs. NCBI nr
Match: XP_022961874.1 (protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-like 4 [Cucurbita maxima] >XP_023545905.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189 bits (479), Expect = 3.78e-60
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60
          MATSPFKSSGSSSSSWTPKQNKKFE+ALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI
Sbjct: 1  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93
          LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
Sbjct: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93

[Close]

BLAST of Csor.00g299520 vs. NCBI nr
Match: XP_038884277.1 (protein RADIALIS-like 4 [Benincasa hispida])

HSP 1 Score: 171 bits (434), Expect = 2.77e-53
Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60
          MA+S FKSSGSSSSSWT KQNKKFE+AL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93
          L+QDLMHIESGK+PLPNYKPIVSNG+VY DEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQR 93

[Close]

BLAST of Csor.00g299520 vs. NCBI nr
Match: KAA0065228.1 (protein RADIALIS-like 4 [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (421), Expect = 2.08e-51
Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60
          MA+S FKSSG+SSSSWT KQNKKFE+AL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93
          L+QDLMHIESGK+PLPNYKP+V NG++Y DEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 93

[Close]

BLAST of Csor.00g299520 vs. NCBI nr
Match: XP_008444724.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 166 bits (421), Expect = 2.66e-51
Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60
          MA+S FKSSG+SSSSWT KQNKKFE+AL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93
          L+QDLMHIESGK+PLPNYKP+V NG++Y DEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 93

[Close]

BLAST of Csor.00g299520 vs. ExPASy TrEMBL
Match: A0A6J1K2Q1 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1)

HSP 1 Score: 189 bits (479), Expect = 1.83e-60
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60
          MATSPFKSSGSSSSSWTPKQNKKFE+ALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI
Sbjct: 1  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93
          LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
Sbjct: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93

[Close]

BLAST of Csor.00g299520 vs. ExPASy TrEMBL
Match: A0A6J1HFA3 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1)

HSP 1 Score: 189 bits (479), Expect = 1.83e-60
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60
          MATSPFKSSGSSSSSWTPKQNKKFE+ALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI
Sbjct: 1  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93
          LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
Sbjct: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93

[Close]

BLAST of Csor.00g299520 vs. ExPASy TrEMBL
Match: A0A5A7VC75 (Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005670 PE=4 SV=1)

HSP 1 Score: 166 bits (421), Expect = 1.01e-51
Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60
          MA+S FKSSG+SSSSWT KQNKKFE+AL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93
          L+QDLMHIESGK+PLPNYKP+V NG++Y DEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 93

[Close]

BLAST of Csor.00g299520 vs. ExPASy TrEMBL
Match: A0A1S3BBS2 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1)

HSP 1 Score: 166 bits (421), Expect = 1.29e-51
Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60
          MA+S FKSSG+SSSSWT KQNKKFE+AL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93
          L+QDLMHIESGK+PLPNYKP+V NG++Y DEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 93

[Close]

BLAST of Csor.00g299520 vs. ExPASy TrEMBL
Match: A0A6J1GIE7 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111454426 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 1.06e-50
Identity = 79/93 (84.95%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60
          MA++ F+SSGSSSSSWTPKQNKKFE+ALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93
          LV DLMHIESGK+PLP YKPI SN  V GDEQR
Sbjct: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93

[Close]

BLAST of Csor.00g299520 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-25
Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 8  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMH 67
          +S SS S WT  QNK FE ALA+Y +DTPDRW  VA+ VGGKT EEVKRHYDILV+DL++
Sbjct: 4  NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68 IESGKIPLPNYKPIVSNGTVYGD-EQRYRAFY 99
          IE+G++PLPNYK   SN     D + RY   Y
Sbjct: 64 IETGRVPLPNYKTFESNSRSINDFDTRYITKY 95

[Close]

BLAST of Csor.00g299520 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 112.1 bits (279), Expect = 2.6e-25
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 8  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMH 67
          +S SS S WT  QNK FE ALA+Y +DTPDRW  VA+ VGGKT EEVKRHYDILV+DL++
Sbjct: 4  NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68 IESGKIPLPNYKPIVSNGTVYGD 91
          IE+G++PLPNYK   SN     D
Sbjct: 64 IETGRVPLPNYKTFESNSRSIND 86

[Close]

BLAST of Csor.00g299520 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 111.3 bits (277), Expect = 4.5e-25
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 8  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMH 67
          SS SSSSSWT KQNK FE ALA+Y +DTPDRWQ VA+ VG K+AEEVKRHYDILV+DLM+
Sbjct: 4  SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMN 63

Query: 68 IESGKIPLPNYKPI 82
          IE   +PLP YK +
Sbjct: 64 IEQDLVPLPKYKTV 77

[Close]

BLAST of Csor.00g299520 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-24
Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 9  SGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHI 68
          S  SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++LVQD+  I
Sbjct: 7  SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSI 66

Query: 69 ESGKIPLPNYKPI--VSNGTVYGDEQRYR 96
          E+G +P PNY+     +NG +  +E+R R
Sbjct: 67 ENGHVPFPNYRTSGGCTNGRLSQEEKRMR 95

[Close]

BLAST of Csor.00g299520 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 5.5e-23
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 1  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60
          MA+    S G  S SWT KQNK FE ALA+Y +DTPDRW  VAR VGGKT EE KR YD+
Sbjct: 1  MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61 LVQDLMHIESGKIPLPNYKPIVSN---GTVYGDEQRYRA 97
          LV+D+  IE+G +P P+YK    N   G +  +E+R R+
Sbjct: 61 LVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRS 97

The following BLAST results are available for this feature:

BLAST of Csor.00g299520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1A173	3.7e-24	63.86	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	6.3e-24	71.62	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	2.4e-23	58.43	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	5.9e-22	54.55	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q9SIJ5	7.7e-22	53.54	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]

BLAST of Csor.00g299520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598451.1	8.03e-66	100.00	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022961874.1	3.78e-60	98.92	protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-li...	[more]
XP_038884277.1	2.77e-53	89.25	protein RADIALIS-like 4 [Benincasa hispida]	[more]
KAA0065228.1	2.08e-51	84.95	protein RADIALIS-like 4 [Cucumis melo var. makuwa]	[more]
XP_008444724.1	2.66e-51	84.95	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]

BLAST of Csor.00g299520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K2Q1	1.83e-60	98.92	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1	[more]
A0A6J1HFA3	1.83e-60	98.92	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1	[more]
A0A5A7VC75	1.01e-51	84.95	Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BBS2	1.29e-51	84.95	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1	[more]
A0A6J1GIE7	1.06e-50	84.95	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111454426 PE=4 SV=1	[more]

BLAST of Csor.00g299520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75250.1	1.2e-25	60.87	RAD-like 6	[more]
AT1G75250.2	2.6e-25	63.86	RAD-like 6	[more]
AT1G19510.1	4.5e-25	71.62	RAD-like 5	[more]
AT4G39250.1	1.7e-24	58.43	RAD-like 1	[more]
AT2G21650.1	5.5e-23	53.54	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..64 e-value: 3.2E-7 score: 40.0
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 8..62 score: 6.481127
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..58 e-value: 2.00439E-7 score: 41.7922
None	No IPR available	GENE3D	1.10.10.60		coord: 7..75 e-value: 2.6E-24 score: 86.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR43952:SF49	BINDING PROTEIN, PUTATIVE-RELATED	coord: 1..93
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..58 e-value: 1.8E-7 score: 31.3
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..93
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 11..58 score: 9.232874
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g299520.m01	Csor.00g299520.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity