Csor.00g298980 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g298980
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr18: 2141186 .. 2141482 (-)
RNA-Seq Expression	Csor.00g298980
Synteny	Csor.00g298980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAACTCTTCGGGTAATAATAAAGGATCGGGTTGGGATGAATTTAGAGATGTCCAAGGGGCTCACGTTCTCCGCTTTTATGGCTAGATTGGGAGGTTTAGAGATGTCTAAAGGGCTTGCGATCCCCAACTGGATTGGGATGGGTTTAGAGATGTTCAAAGGGCTCGCGTTCCCTGCTTTTAGGACTAGATTGGGACGAGTTTGTAGATGTTCAAGGGGCTCGCATTCCTCGCTTTTAGGACCTAGTTGGGATGAGTTTAGAGATGTCCAAAGGACTCGTGCTCTCCGCTTTTAG

mRNA sequence

ATGTTAACTCTTCGGGTAATAATAAAGGATCGGGTTGGGATGAATTTAGAGATGTCCAAGGGGCTCACGTTCTCCGCTTTTATGGCTAGATTGGGAGGTTTAGAGATGTCTAAAGGGCTTGCGATCCCCAACTGGATTGGGATGGGTTTAGAGATGTTCAAAGGGCTCGCGTTCCCTGCTTTTAGGACTAGATTGGGACGAGTTTGTAGATGTTCAAGGGGCTCGCATTCCTCGCTTTTAGGACCTAGTTGGGATGAGTTTAGAGATGTCCAAAGGACTCGTGCTCTCCGCTTTTAG

Coding sequence (CDS)

ATGTTAACTCTTCGGGTAATAATAAAGGATCGGGTTGGGATGAATTTAGAGATGTCCAAGGGGCTCACGTTCTCCGCTTTTATGGCTAGATTGGGAGGTTTAGAGATGTCTAAAGGGCTTGCGATCCCCAACTGGATTGGGATGGGTTTAGAGATGTTCAAAGGGCTCGCGTTCCCTGCTTTTAGGACTAGATTGGGACGAGTTTGTAGATGTTCAAGGGGCTCGCATTCCTCGCTTTTAGGACCTAGTTGGGATGAGTTTAGAGATGTCCAAAGGACTCGTGCTCTCCGCTTTTAG

Protein sequence

MLTLRVIIKDRVGMNLEMSKGLTFSAFMARLGGLEMSKGLAIPNWIGMGLEMFKGLAFPAFRTRLGRVCRCSRGSHSSLLGPSWDEFRDVQRTRALRF

Homology

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BLAST of Csor.00g298980 vs. NCBI nr
Match: KAG6573255.1 (hypothetical protein SDJN03_27142, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200 bits (508), Expect = 1.24e-64
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MLTLRVIIKDRVGMNLEMSKGLTFSAFMARLGGLEMSKGLAIPNWIGMGLEMFKGLAFPA 60
          MLTLRVIIKDRVGMNLEMSKGLTFSAFMARLGGLEMSKGLAIPNWIGMGLEMFKGLAFPA
Sbjct: 1  MLTLRVIIKDRVGMNLEMSKGLTFSAFMARLGGLEMSKGLAIPNWIGMGLEMFKGLAFPA 60

Query: 61 FRTRLGRVCRCSRGSHSSLLGPSWDEFRDVQRTRALRF 98
          FRTRLGRVCRCSRGSHSSLLGPSWDEFRDVQRTRALRF
Sbjct: 61 FRTRLGRVCRCSRGSHSSLLGPSWDEFRDVQRTRALRF 98

The following BLAST results are available for this feature:

BLAST of Csor.00g298980 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g298980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573255.1	1.24e-64	100.00	hypothetical protein SDJN03_27142, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g298980 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g298980 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g298980.m01	Csor.00g298980.m01	mRNA