Csor.00g298710 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g298710
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr18: 2289696 .. 2290238 (+)
RNA-Seq ExpressionCsor.00g298710
SyntenyCsor.00g298710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTCCACTCAAAGACCAACCCCGATATCAGCAGCAGCAGTAGCAGCTCCAATTATTCACTCTCCTTTTCCGGGTTCGTAACTTCTAAAGATCGCCAACCCGACAAGATAATCAGAACACCAGACCAAAGGTTCGAGTTCGGTTCGAGTGTAGCTAACCATTATGGTGGCCAAAGCTTAGTTTTGCCTAGGCCGAGGCCAGAACAAGCCCAGGTTGAGAATATTGACTAAAACTTTCTGAAATTCTCTATTTATAATCCTTAAATGAAAATTTTTAAAAAATAATAAATGAATATAAAATATTTGTCTTTAATAACATGTAAATATATTTATCAGGTTTCTTGTAAGCGGCAACTCGAGAGGGATGAATTGATGGTGAGAAACCACAGTATTAGACGAGGTGGGCGAAGAATAAGGGAGGAGGAAGAGGAGTCGACGTGGTCAGGGTGGAGTGTTTTTCGGTCGTTTGTTTCGCCGTGCAGGGAGTGCCGAGCTAGCAAGCCTGCTGTCGTTGAAGCTCGCCCTGTTCAAAGGGCTTGA

mRNA sequence

ATGGCAGTCCACTCAAAGACCAACCCCGATATCAGCAGCAGCAGTAGCAGCTCCAATTATTCACTCTCCTTTTCCGGGTTCGTAACTTCTAAAGATCGCCAACCCGACAAGATAATCAGAACACCAGACCAAAGGTTCGAGTTCGGTTCGAGTGTAGCTAACCATTATGGTGGCCAAAGCTTAGTTTTGCCTAGGCCGAGGCCAGAACAAGCCCAGGTTTCTTGTAAGCGGCAACTCGAGAGGGATGAATTGATGGTGAGAAACCACAGTATTAGACGAGGTGGGCGAAGAATAAGGGAGGAGGAAGAGGAGTCGACGTGGTCAGGGTGGAGTGTTTTTCGGTCGTTTGTTTCGCCGTGCAGGGAGTGCCGAGCTAGCAAGCCTGCTGTCGTTGAAGCTCGCCCTGTTCAAAGGGCTTGA

Coding sequence (CDS)

ATGGCAGTCCACTCAAAGACCAACCCCGATATCAGCAGCAGCAGTAGCAGCTCCAATTATTCACTCTCCTTTTCCGGGTTCGTAACTTCTAAAGATCGCCAACCCGACAAGATAATCAGAACACCAGACCAAAGGTTCGAGTTCGGTTCGAGTGTAGCTAACCATTATGGTGGCCAAAGCTTAGTTTTGCCTAGGCCGAGGCCAGAACAAGCCCAGGTTTCTTGTAAGCGGCAACTCGAGAGGGATGAATTGATGGTGAGAAACCACAGTATTAGACGAGGTGGGCGAAGAATAAGGGAGGAGGAAGAGGAGTCGACGTGGTCAGGGTGGAGTGTTTTTCGGTCGTTTGTTTCGCCGTGCAGGGAGTGCCGAGCTAGCAAGCCTGCTGTCGTTGAAGCTCGCCCTGTTCAAAGGGCTTGA

Protein sequence

MAVHSKTNPDISSSSSSSNYSLSFSGFVTSKDRQPDKIIRTPDQRFEFGSSVANHYGGQSLVLPRPRPEQAQVSCKRQLERDELMVRNHSIRRGGRRIREEEEESTWSGWSVFRSFVSPCRECRASKPAVVEARPVQRA
Homology
BLAST of Csor.00g298710 vs. NCBI nr
Match: KAG6573282.1 (hypothetical protein SDJN03_27169, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278 bits (710), Expect = 3.96e-94
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0

Query: 1   MAVHSKTNPDISSSSSSSNYSLSFSGFVTSKDRQPDKIIRTPDQRFEFGSSVANHYGGQS 60
           MAVHSKTNPDISSSSSSSNYSLSFSGFVTSKDRQPDKIIRTPDQRFEFGSSVANHYGGQS
Sbjct: 1   MAVHSKTNPDISSSSSSSNYSLSFSGFVTSKDRQPDKIIRTPDQRFEFGSSVANHYGGQS 60

Query: 61  LVLPRPRPEQAQVSCKRQLERDELMVRNHSIRRGGRRIREEEEESTWSGWSVFRSFVSPC 120
           LVLPRPRPEQAQVSCKRQLERDELMVRNHSIRRGGRRIREEEEESTWSGWSVFRSFVSPC
Sbjct: 61  LVLPRPRPEQAQVSCKRQLERDELMVRNHSIRRGGRRIREEEEESTWSGWSVFRSFVSPC 120

Query: 121 RECRASKPAVVEARPVQRA 139
           RECRASKPAVVEARPVQRA
Sbjct: 121 RECRASKPAVVEARPVQRA 139

BLAST of Csor.00g298710 vs. NCBI nr
Match: XP_022139818.1 (uncharacterized protein LOC111010640 [Momordica charantia])

HSP 1 Score: 114 bits (285), Expect = 4.23e-29
Identity = 78/151 (51.66%), Postives = 97/151 (64.24%), Query Frame = 0

Query: 1   MAVHSKT--NPDISSSSSSS---NYSLSFSGFVTSKDRQPDK--IIRTPDQRFEFGSSVA 60
           M +H K    PDISSS SSS   + SLSF+ ++T KDR+P+   +I+T DQ FEFG    
Sbjct: 8   MGIHPKNPAQPDISSSGSSSYSFSSSLSFAAYLTCKDREPNSGGLIKTGDQGFEFGPICC 67

Query: 61  N-HYGGQSLVLPRPRPEQAQVSCKRQLERDELMVRNHSIRRGGRRIREEEEESTWS-GWS 120
           + H GG      R R +  Q           L+VRN+SIRRGGRRI++EEEES+ S  WS
Sbjct: 68  DDHDGGSGSGRRRIRDDDGQRW---------LVVRNNSIRRGGRRIKDEEEESSSSTSWS 127

Query: 121 -VFRSFVSPCRECRASKPAVV---EARPVQR 138
            VFRSFVSPCRECRASKP+ V   +A P+QR
Sbjct: 128 SVFRSFVSPCRECRASKPSAVIEAQAHPIQR 149

BLAST of Csor.00g298710 vs. NCBI nr
Match: KGN64696.1 (hypothetical protein Csa_013090 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 7.06e-23
Identity = 61/150 (40.67%), Postives = 83/150 (55.33%), Query Frame = 0

Query: 1   MAVHSKTNPDISSSSSSSNYSLSFSGFVTSKDRQP---------DKIIRTPDQRFEF--- 60
           M +H K  P +SS++S+   SLSFSG++ SKDR           D+ I+  D  FEF   
Sbjct: 1   MRIHRKK-PHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPT 60

Query: 61  -GSSVANHYGGQSLVLPRPRPEQAQVSCKRQLERDELMVRNHSIRRGGRRIREEEEESTW 120
            G S  + YG +S                        +VRN+SI+RG ++I EE++ES W
Sbjct: 61  CGGSSVSDYGERSSAY---------------------IVRNNSIKRGSKKIWEEKDESRW 120

Query: 121 SGWSVFRSFVSPCRECRASKPAVVEARPVQ 137
           SGW +F  FV PCRECRA KP+VV+ RP+Q
Sbjct: 121 SGWRIFWLFVLPCRECRARKPSVVQPRPIQ 128

BLAST of Csor.00g298710 vs. NCBI nr
Match: KAA0057006.1 (hypothetical protein E6C27_scaffold96G001880 [Cucumis melo var. makuwa] >TYK26433.1 hypothetical protein E5676_scaffold861G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.46e-19
Identity = 60/147 (40.82%), Postives = 81/147 (55.10%), Query Frame = 0

Query: 1   MAVHSKTNPDISSSSSSSNY-SLSFSGFVTSKDRQP---------DKIIRTPDQRFEFGS 60
           M +H+K  P +SS+++S+   SLSFSG++ SKDR+          D+ I+  +  FEFG 
Sbjct: 1   MGIHTKK-PHMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGFEFGG 60

Query: 61  SVANHYGGQSLVLPRPRPEQAQVSCKRQLERDELMVRNHSIRRGGRRIREEEEESTWSGW 120
                      +  R  P                +VRN+SIRRG ++IREE+EES W   
Sbjct: 61  PTCRGSSVSDYIGERSSP---------------YIVRNNSIRRGSKKIREEKEESRWR-- 120

Query: 121 SVFRSFVSPCRECRASKPAVVEARPVQ 137
            V  SFV PCRECRASKP VV+ RP+Q
Sbjct: 121 -VVWSFVLPCRECRASKPNVVQPRPIQ 128

BLAST of Csor.00g298710 vs. NCBI nr
Match: MBA0577458.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 52.8 bits (125), Expect = 1.72e-05
Identity = 45/133 (33.83%), Postives = 62/133 (46.62%), Query Frame = 0

Query: 13  SSSSSSNYSLSFSGFV--------TSKDRQPDKIIRTPDQRFEFGSSVANHYGGQSLV-- 72
           S+SSS +YSLSF+  V        ++KD+ P    +         SS  +  GG  L+  
Sbjct: 18  SNSSSLDYSLSFTSLVCIDPPNHQSNKDQSPHDSNK---------SSRPDSGGGDHLLPL 77

Query: 73  --LPRPRPEQAQVSCKRQLERDELMVRNHSIRRGGRRIREEEEESTWSGWSVFRSFVSPC 132
             L + RP       +R+L        N  +R  G+R  E      W G  + RSFVSPC
Sbjct: 78  EFLSKSRPPSLSGDGERKL--------NGEVRNQGKR--ETMGSKPWFGRKLLRSFVSPC 131

BLAST of Csor.00g298710 vs. ExPASy TrEMBL
Match: A0A6J1CGL7 (uncharacterized protein LOC111010640 OS=Momordica charantia OX=3673 GN=LOC111010640 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 2.05e-29
Identity = 78/151 (51.66%), Postives = 97/151 (64.24%), Query Frame = 0

Query: 1   MAVHSKT--NPDISSSSSSS---NYSLSFSGFVTSKDRQPDK--IIRTPDQRFEFGSSVA 60
           M +H K    PDISSS SSS   + SLSF+ ++T KDR+P+   +I+T DQ FEFG    
Sbjct: 8   MGIHPKNPAQPDISSSGSSSYSFSSSLSFAAYLTCKDREPNSGGLIKTGDQGFEFGPICC 67

Query: 61  N-HYGGQSLVLPRPRPEQAQVSCKRQLERDELMVRNHSIRRGGRRIREEEEESTWS-GWS 120
           + H GG      R R +  Q           L+VRN+SIRRGGRRI++EEEES+ S  WS
Sbjct: 68  DDHDGGSGSGRRRIRDDDGQRW---------LVVRNNSIRRGGRRIKDEEEESSSSTSWS 127

Query: 121 -VFRSFVSPCRECRASKPAVV---EARPVQR 138
            VFRSFVSPCRECRASKP+ V   +A P+QR
Sbjct: 128 SVFRSFVSPCRECRASKPSAVIEAQAHPIQR 149

BLAST of Csor.00g298710 vs. ExPASy TrEMBL
Match: A0A0A0LXF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075010 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.42e-23
Identity = 61/150 (40.67%), Postives = 83/150 (55.33%), Query Frame = 0

Query: 1   MAVHSKTNPDISSSSSSSNYSLSFSGFVTSKDRQP---------DKIIRTPDQRFEF--- 60
           M +H K  P +SS++S+   SLSFSG++ SKDR           D+ I+  D  FEF   
Sbjct: 1   MRIHRKK-PHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPT 60

Query: 61  -GSSVANHYGGQSLVLPRPRPEQAQVSCKRQLERDELMVRNHSIRRGGRRIREEEEESTW 120
            G S  + YG +S                        +VRN+SI+RG ++I EE++ES W
Sbjct: 61  CGGSSVSDYGERSSAY---------------------IVRNNSIKRGSKKIWEEKDESRW 120

Query: 121 SGWSVFRSFVSPCRECRASKPAVVEARPVQ 137
           SGW +F  FV PCRECRA KP+VV+ RP+Q
Sbjct: 121 SGWRIFWLFVLPCRECRARKPSVVQPRPIQ 128

BLAST of Csor.00g298710 vs. ExPASy TrEMBL
Match: A0A5D3DS79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00970 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.07e-20
Identity = 60/147 (40.82%), Postives = 81/147 (55.10%), Query Frame = 0

Query: 1   MAVHSKTNPDISSSSSSSNY-SLSFSGFVTSKDRQP---------DKIIRTPDQRFEFGS 60
           M +H+K  P +SS+++S+   SLSFSG++ SKDR+          D+ I+  +  FEFG 
Sbjct: 1   MGIHTKK-PHMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGFEFGG 60

Query: 61  SVANHYGGQSLVLPRPRPEQAQVSCKRQLERDELMVRNHSIRRGGRRIREEEEESTWSGW 120
                      +  R  P                +VRN+SIRRG ++IREE+EES W   
Sbjct: 61  PTCRGSSVSDYIGERSSP---------------YIVRNNSIRRGSKKIREEKEESRWR-- 120

Query: 121 SVFRSFVSPCRECRASKPAVVEARPVQ 137
            V  SFV PCRECRASKP VV+ RP+Q
Sbjct: 121 -VVWSFVLPCRECRASKPNVVQPRPIQ 128

BLAST of Csor.00g298710 vs. ExPASy TrEMBL
Match: A0A7J8NKE2 (Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_023960 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.31e-06
Identity = 45/133 (33.83%), Postives = 62/133 (46.62%), Query Frame = 0

Query: 13  SSSSSSNYSLSFSGFV--------TSKDRQPDKIIRTPDQRFEFGSSVANHYGGQSLV-- 72
           S+SSS +YSLSF+  V        ++KD+ P    +         SS  +  GG  L+  
Sbjct: 18  SNSSSLDYSLSFTSLVCIDPPNHQSNKDQSPHDSNK---------SSRPDSGGGDHLLPL 77

Query: 73  --LPRPRPEQAQVSCKRQLERDELMVRNHSIRRGGRRIREEEEESTWSGWSVFRSFVSPC 132
             L + RP       +R+L        N  +R  G+R  E      W G  + RSFVSPC
Sbjct: 78  EFLSKSRPPSLSGDGERKL--------NGEVRNQGKR--ETMGSKPWFGRKLLRSFVSPC 131

BLAST of Csor.00g298710 vs. ExPASy TrEMBL
Match: A0A5D2TGY7 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D09G088900v1 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.53e-06
Identity = 45/132 (34.09%), Postives = 62/132 (46.97%), Query Frame = 0

Query: 13  SSSSSSNYSLSFSGFV--------TSKDRQPDKIIRTPDQRFEFGSSVANHYGGQSLVLP 72
           S+SSS +YSLSF+  V        ++KD+ P    +         SS  +  GG  L L 
Sbjct: 8   SNSSSLDYSLSFTSLVCIDPPNHQSNKDQSPHDSNK---------SSRPDSGGGHLLPLE 67

Query: 73  ---RPRPEQAQVSCKRQLERDELMVRNHSIRRGGRRIREEEEESTWSGWSVFRSFVSPCR 132
              + RP       +R+L        N  +R  G+R  E  +   W G  + RSFVSPCR
Sbjct: 68  FLLKSRPPSLGGDGERKL--------NGEVRNQGKR--ETMDSKPWFGRKLLRSFVSPCR 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6573282.13.96e-94100.00hypothetical protein SDJN03_27169, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022139818.14.23e-2951.66uncharacterized protein LOC111010640 [Momordica charantia][more]
KGN64696.17.06e-2340.67hypothetical protein Csa_013090 [Cucumis sativus][more]
KAA0057006.11.46e-1940.82hypothetical protein E6C27_scaffold96G001880 [Cucumis melo var. makuwa] >TYK2643... [more]
MBA0577458.11.72e-0533.83hypothetical protein [Gossypium lobatum][more]
Match NameE-valueIdentityDescription
A0A6J1CGL72.05e-2951.66uncharacterized protein LOC111010640 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A0A0LXF93.42e-2340.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075010 PE=4 SV=1[more]
A0A5D3DS797.07e-2040.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A7J8NKE28.31e-0633.83Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_023960 PE=4 SV=1[more]
A0A5D2TGY79.53e-0634.09Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D09G088900v1 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g298710.m01Csor.00g298710.m01mRNA