Csor.00g298350 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g298350
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	SAP-like protein BP-73
Location	Csor_Chr18: 2523225 .. 2525756 (-)
RNA-Seq Expression	Csor.00g298350
Synteny	Csor.00g298350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGTGCCCTGCCGGAGATATCCAGAACACCGGAGGGGTTCTGCTATCAGTACCATATTTTGCCGCAAATCCCAGTAAGAAACGGCAAAAACGGTGATGAATTTCGGCTATTAAACAAATAGCGGTAGCAATAATGGCGACAAATCAAAAGAAACGACGAACACTGAGATAGCCACGTGGGAGCACGAGATTCAGAAACTTGTGGACAGCCCACATTATAACACACCCATACATTACAACCTTGTGGATCAGATCCAGTTTGAACATTCATAGAATTCCATTTTTCTGGGAAAAATCAAATGGAAGCAGTAGTTCTCCAGTCTCGAACCCTAATCCGTTTCCCCAATTTGGTCTCTTTCACCAGGAGGAGACCCATTTTCACTTTGAAAGGTATGAATCTCCACATTCTATCAGATTCCCAGAAAAACCCATCTAGAATTCTTGTGTATTTCACGAGCTGAGGGATTAATTTTTATGCAGCTTGTTGAATTTGGCAGAGATTGCAGATGGGTATCGTAGCAAGAGCATTCAATTGGCTGTTTCAAGCAATGGAAACGATGGAAAAACAGGGCATCAGCCTGTTCGTAGAAGCTCTGCGCCTGGAAGAACAAGGAAGAATGTGTCATCCTTGAGAAAAACAGATACCCATAAGAATGAAGACATGAAAAAACCCAAATCAAATAACCAGGAGGAAATAATTGCTCTCTTTAGGAAGATACAGACTTCCATTGCTGAGGAAGCTGCAAGCTCCATTGATGAAGATACTAACAAGGATGAAGATGGAACTGAGTCTATTTTGGAGGCTCTTACTGAATCAAGGAAGCAAGTAAAAGGTAATTTCTTGATTGTCTCATCTGGTGCATTCGTGAGAAATTTGACCCACCTTTGAATCCATCAATGCATCTTGCAAGAACTAAAGTCATGAACATAAACATCCCTTTTGTGGTATACAAGAACCTTGATGATGATAACCATTGTTGTAAGTTGTCATGAAGTATAGGTTCATGCATCTTCGGTTTAAGATTGTTGGGAGTGAGTCCCACATTGGTTAATTTAGGGAATGATCATGGGTTTATAAGTAAAGAAATACATCTTCATTGGAAAGAGGCCTTTTGGAAAAATCAAAAGTAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGCTCGTGATTCCTAACATCGTATCAGAGTCATGTTCTTAACTTAGCCATGTCAATAGAATCCTCAATGTCGAACAAAGAAGTTGTGAGTTTCGAAGGTATAGTCAAAAGTAACCGAGTGTCAAACAAAGGGTGAACTCTGTTCGAGTACTCCAGAGAAAGAGTCGAGCCTCGATTAAGGGGAGGTTGTTTGAGGGCTCCATAGGTCTCATGAGAAGCTTATAGTGTATTTTGTTCGAGGGGAGGATTGTTGAGGATTGTTGGGAGTGAGTTCGAAGGTATAGTCAAAAGTAACCAAGTGTCAAACAAAGGGTGAACTCTGTTCGAGTACTCCAGAGAAAGAGTCGAGCCTCGATTAAGGGGAGGTTGTTCGAGGGCTCCATAGGTCTCATGAGAAGCTTATAGTGTATTTTGTTCGAGGGGAGGATTGTTGAGGATTGTTGGGAGTGAGTCCCACATTGGCTAATCTAGGGAATGATCGTGGGTTTCATTGGTATGAGGTCTTTTAGGGAAGCCCAAAGCAAAGTCATGAAAGCTTAAGCTCAAAGTGGATAATATAATACCATTGTGGAGAGTCGTGATTCCTAACATCTCATGTGCATATATTGGCATTTAGTTGGTTCATAACTCTCATTGTTTGGTTCATAACCCTTTTGGTTCATCTTCTATTTTGATACACGAATCATCTTGATTCATGTATGACATTAACGCTTCTATGTCATATAAAGGGTTGTCTAGGATGGTTGAGATGCATCGAGTTTGTTTGTTTGTTTGAGTATTATTTTGTATTTGTTGAGTGACATTTAGGAAGAACTTTGTCGAGAGACTTTGTAGTGTGAAAGTGTAAGATATACACTTCGTAAACACTTTGATTATTGAGATTAGTAGCTACTCGTGGATGTAGGGAAATTTCTTTTCTCCGAACCAAGTAAATCTTTGTGTCTCTTTGTTCAACTTCTGTTAGTGGGTGTGTGAGTGCTATCGTTCTCACTTCCACTTACGTTACAACAAAAGTATCGTGTTCTTACCATGCGAAAACACGGCGACACTCTATGACTGAATGGATGTGCATTATAACTTGGTATGGACAGGCAAAACTTTAAAGAATGCAGGAGTTAAAGGGCTGAGAAGAACAGGCACATCTGAAGCTGCTGCAGAATTCAAGTTAGTACGGCCACCGTCTAACTTTGTGAAGAGATCACCAATCCCATCGCCGGCAGGAGGAAATGGTACGCATCTTACAGTGGAGAATATGAAACTTAAAGAGCTGAAAGCAGTTGCAAAATCTAGAGGAATTAAGGGATACTCCAAGTTGAAGAAAAATGAGCTGCTGGAACTGCTGACATCTTAA

mRNA sequence

ATGATAGTGCCCTGCCGGAGATATCCAGAACACCGGAGGGGTTCTGCTATCAGTACCATATTTTGCCGCAAATCCCAATCCAGTTTGAACATTCATAGAATTCCATTTTTCTGGGAAAAATCAAATGGAAGCAGTAGTTCTCCAGTCTCGAACCCTAATCCGTTTCCCCAATTTGGTCTCTTTCACCAGGAGGAGACCCATTTTCACTTTGAAAGCTTGTTGAATTTGGCAGAGATTGCAGATGGGTATCGTAGCAAGAGCATTCAATTGGCTGTTTCAAGCAATGGAAACGATGGAAAAACAGGGCATCAGCCTGTTCGTAGAAGCTCTGCGCCTGGAAGAACAAGGAAGAATGTGTCATCCTTGAGAAAAACAGATACCCATAAGAATGAAGACATGAAAAAACCCAAATCAAATAACCAGGAGGAAATAATTGCTCTCTTTAGGAAGATACAGACTTCCATTGCTGAGGAAGCTGCAAGCTCCATTGATGAAGATACTAACAAGGATGAAGATGGAACTGAGTCTATTTTGGAGGCTCTTACTGAATCAAGGAAGCAAGTAAAAGGCAAAACTTTAAAGAATGCAGGAGTTAAAGGGCTGAGAAGAACAGGCACATCTGAAGCTGCTGCAGAATTCAAGTTAGTACGGCCACCGTCTAACTTTGTGAAGAGATCACCAATCCCATCGCCGGCAGGAGGAAATGGTACGCATCTTACAGTGGAGAATATGAAACTTAAAGAGCTGAAAGCAGTTGCAAAATCTAGAGGAATTAAGGGATACTCCAAGTTGAAGAAAAATGAGCTGCTGGAACTGCTGACATCTTAA

Coding sequence (CDS)

ATGATAGTGCCCTGCCGGAGATATCCAGAACACCGGAGGGGTTCTGCTATCAGTACCATATTTTGCCGCAAATCCCAATCCAGTTTGAACATTCATAGAATTCCATTTTTCTGGGAAAAATCAAATGGAAGCAGTAGTTCTCCAGTCTCGAACCCTAATCCGTTTCCCCAATTTGGTCTCTTTCACCAGGAGGAGACCCATTTTCACTTTGAAAGCTTGTTGAATTTGGCAGAGATTGCAGATGGGTATCGTAGCAAGAGCATTCAATTGGCTGTTTCAAGCAATGGAAACGATGGAAAAACAGGGCATCAGCCTGTTCGTAGAAGCTCTGCGCCTGGAAGAACAAGGAAGAATGTGTCATCCTTGAGAAAAACAGATACCCATAAGAATGAAGACATGAAAAAACCCAAATCAAATAACCAGGAGGAAATAATTGCTCTCTTTAGGAAGATACAGACTTCCATTGCTGAGGAAGCTGCAAGCTCCATTGATGAAGATACTAACAAGGATGAAGATGGAACTGAGTCTATTTTGGAGGCTCTTACTGAATCAAGGAAGCAAGTAAAAGGCAAAACTTTAAAGAATGCAGGAGTTAAAGGGCTGAGAAGAACAGGCACATCTGAAGCTGCTGCAGAATTCAAGTTAGTACGGCCACCGTCTAACTTTGTGAAGAGATCACCAATCCCATCGCCGGCAGGAGGAAATGGTACGCATCTTACAGTGGAGAATATGAAACTTAAAGAGCTGAAAGCAGTTGCAAAATCTAGAGGAATTAAGGGATACTCCAAGTTGAAGAAAAATGAGCTGCTGGAACTGCTGACATCTTAA

Protein sequence

MIVPCRRYPEHRRGSAISTIFCRKSQSSLNIHRIPFFWEKSNGSSSSPVSNPNPFPQFGLFHQEETHFHFESLLNLAEIADGYRSKSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDTNKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRTGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAVAKSRGIKGYSKLKKNELLELLTS

Homology

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BLAST of Csor.00g298350 vs. ExPASy Swiss-Prot
Match: Q8L4E7 (SAP-like protein BP-73 OS=Oryza sativa subsp. japonica OX=39947 GN=BP-73 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 4.0e-04
Identity = 21/35 (60.00%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 241 VENMKLKELKAVAKSRGIKGYSKLKKNELLELLTS 276
           +  +K+ EL+ +AKSRGIKGYSK+KKN+L+ELL++
Sbjct: 339 LSTLKVTELRELAKSRGIKGYSKMKKNDLVELLSN 373

[Close]

BLAST of Csor.00g298350 vs. NCBI nr
Match: KAG6573318.1 (hypothetical protein SDJN03_27205, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 529 bits (1363), Expect = 3.50e-189
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0


Query: 1   MIVPCRRYPEHRRGSAISTIFCRKSQSSLNIHRIPFFWEKSNGSSSSPVSNPNPFPQFGL 60
           MIVPCRRYPEHRRGSAISTIFCRKSQSSLNIHRIPFFWEKSNGSSSSPVSNPNPFPQFGL
Sbjct: 1   MIVPCRRYPEHRRGSAISTIFCRKSQSSLNIHRIPFFWEKSNGSSSSPVSNPNPFPQFGL 60

Query: 61  FHQEETHFHFESLLNLAEIADGYRSKSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVS 120
           FHQEETHFHFESLLNLAEIADGYRSKSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVS
Sbjct: 61  FHQEETHFHFESLLNLAEIADGYRSKSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVS 120

Query: 121 SLRKTDTHKNEDMKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDTNKDEDGTESILEA 180
           SLRKTDTHKNEDMKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDTNKDEDGTESILEA
Sbjct: 121 SLRKTDTHKNEDMKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDTNKDEDGTESILEA 180

Query: 181 LTESRKQVKGKTLKNAGVKGLRRTGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLT 240
           LTESRKQVKGKTLKNAGVKGLRRTGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLT
Sbjct: 181 LTESRKQVKGKTLKNAGVKGLRRTGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLT 240

Query: 241 VENMKLKELKAVAKSRGIKGYSKLKKNELLELLTS 275
           VENMKLKELKAVAKSRGIKGYSKLKKNELLELLTS
Sbjct: 241 VENMKLKELKAVAKSRGIKGYSKLKKNELLELLTS 275

[Close]

BLAST of Csor.00g298350 vs. NCBI nr
Match: KAG7012488.1 (hypothetical protein SDJN02_25240, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 472 bits (1214), Expect = 6.34e-166
Identity = 247/250 (98.80%), Postives = 249/250 (99.60%), Query Frame = 0


Query: 26  QSSLNIHRIPFFWEKSNGSSSSPVSNPNPFPQFGLFHQEETHFHFESLLNLAEIADGYRS 85
           +SSLNIHRIPFFWEKSNGSSSSPVSNPNPFPQFGLFH+EETHFHFESLLNLAEIADGYRS
Sbjct: 61  RSSLNIHRIPFFWEKSNGSSSSPVSNPNPFPQFGLFHKEETHFHFESLLNLAEIADGYRS 120

Query: 86  KSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEII 145
           KSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEII
Sbjct: 121 KSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEII 180

Query: 146 ALFRKIQTSIAEEAASSIDEDTNKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRTG 205
           ALFRKIQTSIAEEAASSIDEDTNKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRTG
Sbjct: 181 ALFRKIQTSIAEEAASSIDEDTNKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRTG 240

Query: 206 TSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAVAKSRGIKGYSKLK 265
           TSEAA EFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAVAKSRGIKGYSKLK
Sbjct: 241 TSEAAPEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAVAKSRGIKGYSKLK 300

Query: 266 KNELLELLTS 275
           KNELLELLTS
Sbjct: 301 KNELLELLTS 310

[Close]

BLAST of Csor.00g298350 vs. NCBI nr
Match: XP_022954445.1 (uncharacterized protein LOC111456710, partial [Cucurbita moschata])

HSP 1 Score: 469 bits (1206), Expect = 6.10e-165
Identity = 246/250 (98.40%), Postives = 249/250 (99.60%), Query Frame = 0


Query: 26  QSSLNIHRIPFFWEKSNGSSSSPVSNPNPFPQFGLFHQEETHFHFESLLNLAEIADGYRS 85
           +SSLNIHRIPFFWEKSNGSSSS VSNPNPFPQFGLFHQEETHFHFESLLNLAEIADGYRS
Sbjct: 46  RSSLNIHRIPFFWEKSNGSSSSSVSNPNPFPQFGLFHQEETHFHFESLLNLAEIADGYRS 105

Query: 86  KSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEII 145
           KSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEII
Sbjct: 106 KSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEII 165

Query: 146 ALFRKIQTSIAEEAASSIDEDTNKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRTG 205
           ALFRKIQTSIAEEAASSIDE++NKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRTG
Sbjct: 166 ALFRKIQTSIAEEAASSIDENSNKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRTG 225

Query: 206 TSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAVAKSRGIKGYSKLK 265
           TSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAVAKSRGIKGYSKLK
Sbjct: 226 TSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAVAKSRGIKGYSKLK 285

Query: 266 KNELLELLTS 275
           KNELLELLTS
Sbjct: 286 KNELLELLTS 295

[Close]

BLAST of Csor.00g298350 vs. NCBI nr
Match: XP_023542167.1 (uncharacterized protein LOC111802132, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 455 bits (1171), Expect = 1.31e-159
Identity = 240/251 (95.62%), Postives = 247/251 (98.41%), Query Frame = 0


Query: 26  QSSLNIHRIPFFWEKSNGSSSSPVSNPNPFPQFGLFHQEETHFHFESLLNLAEIADGYRS 85
           +SSLNIHRIPFFWEKS+GSSS PVSNPNPFPQFGLFH+EETHFHFESLLNLAEIADGYRS
Sbjct: 45  RSSLNIHRIPFFWEKSDGSSSFPVSNPNPFPQFGLFHKEETHFHFESLLNLAEIADGYRS 104

Query: 86  KSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEII 145
           K+IQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNV SLRKTDTHKNEDMKKPKSNNQEEII
Sbjct: 105 KNIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVPSLRKTDTHKNEDMKKPKSNNQEEII 164

Query: 146 ALFRKIQTSIAEEAASSIDEDTNKDEDGTESILEALTESRKQVKGKTLKNAG-VKGLRRT 205
           ALFRKIQTSIAEEAASSIDED+NKDEDGTESILEALTESRKQVKGKTLKNAG VKGLRR 
Sbjct: 165 ALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKGKTLKNAGGVKGLRRK 224

Query: 206 GTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAVAKSRGIKGYSKL 265
           GTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNG+HLTVENMKL+ELKAVAKSRGIKGYSKL
Sbjct: 225 GTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVENMKLRELKAVAKSRGIKGYSKL 284

Query: 266 KKNELLELLTS 275
           KKNELLELLTS
Sbjct: 285 KKNELLELLTS 295

[Close]

BLAST of Csor.00g298350 vs. NCBI nr
Match: XP_022994883.1 (uncharacterized protein LOC111490473 [Cucurbita maxima])

HSP 1 Score: 351 bits (900), Expect = 2.16e-119
Identity = 189/203 (93.10%), Postives = 193/203 (95.07%), Query Frame = 0


Query: 73  LLNLAEIADGYRSKSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNED 132
           +  L EIADGYRS SIQLAVSSNG DG  GHQPVRRSSAPGRTRKNV SLRKTDTHKNED
Sbjct: 26  IFTLKEIADGYRSNSIQLAVSSNGKDGNAGHQPVRRSSAPGRTRKNVPSLRKTDTHKNED 85

Query: 133 MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDTNKDEDGTESILEALTESRKQVKGKT 192
           MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDED+NKDEDGTESILEALTESRKQVKGKT
Sbjct: 86  MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKGKT 145

Query: 193 LKNAGVKGLRRTGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAV 252
           LKNAGVKGLRR  TSEAAAEFKLVRPPSNFVKRSPIP+PAGGNG+HLTVENMKLKELKAV
Sbjct: 146 LKNAGVKGLRRKDTSEAAAEFKLVRPPSNFVKRSPIPTPAGGNGSHLTVENMKLKELKAV 205

Query: 253 AKSRGIKGYSKLKKNELLELLTS 275
           AKSRGIKGYSKLKKNELLELLTS
Sbjct: 206 AKSRGIKGYSKLKKNELLELLTS 228

[Close]

BLAST of Csor.00g298350 vs. ExPASy TrEMBL
Match: A0A6J1GSF6 (uncharacterized protein LOC111456710 OS=Cucurbita moschata OX=3662 GN=LOC111456710 PE=4 SV=1)

HSP 1 Score: 469 bits (1206), Expect = 2.95e-165
Identity = 246/250 (98.40%), Postives = 249/250 (99.60%), Query Frame = 0


Query: 26  QSSLNIHRIPFFWEKSNGSSSSPVSNPNPFPQFGLFHQEETHFHFESLLNLAEIADGYRS 85
           +SSLNIHRIPFFWEKSNGSSSS VSNPNPFPQFGLFHQEETHFHFESLLNLAEIADGYRS
Sbjct: 46  RSSLNIHRIPFFWEKSNGSSSSSVSNPNPFPQFGLFHQEETHFHFESLLNLAEIADGYRS 105

Query: 86  KSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEII 145
           KSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEII
Sbjct: 106 KSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEII 165

Query: 146 ALFRKIQTSIAEEAASSIDEDTNKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRTG 205
           ALFRKIQTSIAEEAASSIDE++NKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRTG
Sbjct: 166 ALFRKIQTSIAEEAASSIDENSNKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRTG 225

Query: 206 TSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAVAKSRGIKGYSKLK 265
           TSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAVAKSRGIKGYSKLK
Sbjct: 226 TSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAVAKSRGIKGYSKLK 285

Query: 266 KNELLELLTS 275
           KNELLELLTS
Sbjct: 286 KNELLELLTS 295

[Close]

BLAST of Csor.00g298350 vs. ExPASy TrEMBL
Match: A0A6J1K6B8 (uncharacterized protein LOC111490473 OS=Cucurbita maxima OX=3661 GN=LOC111490473 PE=4 SV=1)

HSP 1 Score: 351 bits (900), Expect = 1.05e-119
Identity = 189/203 (93.10%), Postives = 193/203 (95.07%), Query Frame = 0


Query: 73  LLNLAEIADGYRSKSIQLAVSSNGNDGKTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNED 132
           +  L EIADGYRS SIQLAVSSNG DG  GHQPVRRSSAPGRTRKNV SLRKTDTHKNED
Sbjct: 26  IFTLKEIADGYRSNSIQLAVSSNGKDGNAGHQPVRRSSAPGRTRKNVPSLRKTDTHKNED 85

Query: 133 MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDTNKDEDGTESILEALTESRKQVKGKT 192
           MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDED+NKDEDGTESILEALTESRKQVKGKT
Sbjct: 86  MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKGKT 145

Query: 193 LKNAGVKGLRRTGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAV 252
           LKNAGVKGLRR  TSEAAAEFKLVRPPSNFVKRSPIP+PAGGNG+HLTVENMKLKELKAV
Sbjct: 146 LKNAGVKGLRRKDTSEAAAEFKLVRPPSNFVKRSPIPTPAGGNGSHLTVENMKLKELKAV 205

Query: 253 AKSRGIKGYSKLKKNELLELLTS 275
           AKSRGIKGYSKLKKNELLELLTS
Sbjct: 206 AKSRGIKGYSKLKKNELLELLTS 228

[Close]

BLAST of Csor.00g298350 vs. ExPASy TrEMBL
Match: A0A6J1CF22 (uncharacterized protein LOC111010657 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010657 PE=4 SV=1)

HSP 1 Score: 259 bits (661), Expect = 8.29e-83
Identity = 166/266 (62.41%), Postives = 188/266 (70.68%), Query Frame = 0


Query: 37  FWEKSNGSSSSPVSNPNPFPQFGLFHQEETHFHFESLLNLAEIADGYRSKSIQLAVSSNG 96
           F  KS+G SS PVSN +   QFGLF +E THF FESLLNLAEIA    SK IQ++V+SNG
Sbjct: 11  FQGKSDGGSSFPVSN-STLSQFGLFWKE-THFRFESLLNLAEIAAVNSSKGIQVSVTSNG 70

Query: 97  NDGKTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEIIALFRKIQTSIA 156
             G  G +P RRSS PGRTRKN  +  +      ED+K PKSNNQEEIIALFRKIQTSIA
Sbjct: 71  G-GNAGQRPPRRSSGPGRTRKNEPNRNEAA----EDLKNPKSNNQEEIIALFRKIQTSIA 130

Query: 157 EEAASSIDEDTNKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRTGTSEA------- 216
           +++A++ DED+++DE G ESILE+L ESRKQVKG+T K AGVK LRR G SE        
Sbjct: 131 KDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMYHTS 190

Query: 217 -AAEFKLVRPPSNFVKRSPIPSPAGGNGTHL-------------------TVENMKLKEL 275
            AAEFKLVRPPS FVKRSPIPSP G NG+                     +VENMKL EL
Sbjct: 191 PAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKLTEL 250

[Close]

BLAST of Csor.00g298350 vs. ExPASy TrEMBL
Match: A0A5A7UMB7 (SAP-like protein BP-73 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002410 PE=4 SV=1)

HSP 1 Score: 251 bits (641), Expect = 1.04e-79
Identity = 156/255 (61.18%), Postives = 185/255 (72.55%), Query Frame = 0


Query: 40  KSNGSSSSPVSNPNPFPQFGLFHQEETHFHFESLLNLAEIADGYRSKSIQLAVSSNGNDG 99
           KS+GSSS P S  NP  QF LF +++TH  FESLLNLA+IAD Y SK+IQL+VS+N  DG
Sbjct: 21  KSDGSSSFPASYSNPLSQFNLF-EKKTHVRFESLLNLADIADVYPSKNIQLSVSNNRPDG 80

Query: 100 KTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNED-MKKPKSNNQEEIIALFRKIQTSIAEE 159
              ++P RR+S PG+TRK+ SS RK +  KNE+ +KK K N+QEEIIALFRKIQ SIA+E
Sbjct: 81  NARNRPPRRNSLPGKTRKSESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASIAKE 140

Query: 160 AASSIDEDTNKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRTGTSEA--------- 219
           +ASSIDE+++KDE G  SILE L E RKQ+KGKT K AG K  R  GTSE          
Sbjct: 141 SASSIDEESHKDEHGATSILETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDPSPP 200

Query: 220 -AAEFKLVRPPSNFVKRSPIP-----SPAGGNGTHL---TVENMKLKELKAVAKSRGIKG 275
            AA+FKLVRPPS FVKRSPIP     S A      L   ++ENMKL ELKA+AKSRGIKG
Sbjct: 201 PAADFKLVRPPSKFVKRSPIPPKVDASQAIAESRELKFPSIENMKLAELKALAKSRGIKG 260

[Close]

BLAST of Csor.00g298350 vs. ExPASy TrEMBL
Match: A0A1S3BFQ9 (SAP-like protein BP-73 OS=Cucumis melo OX=3656 GN=LOC103489342 PE=4 SV=1)

HSP 1 Score: 251 bits (641), Expect = 1.04e-79
Identity = 156/255 (61.18%), Postives = 185/255 (72.55%), Query Frame = 0


Query: 40  KSNGSSSSPVSNPNPFPQFGLFHQEETHFHFESLLNLAEIADGYRSKSIQLAVSSNGNDG 99
           KS+GSSS P S  NP  QF LF +++TH  FESLLNLA+IAD Y SK+IQL+VS+N  DG
Sbjct: 21  KSDGSSSFPASYSNPLSQFNLF-EKKTHVRFESLLNLADIADVYPSKNIQLSVSNNRPDG 80

Query: 100 KTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNED-MKKPKSNNQEEIIALFRKIQTSIAEE 159
              ++P RR+S PG+TRK+ SS RK +  KNE+ +KK K N+QEEIIALFRKIQ SIA+E
Sbjct: 81  NARNRPPRRNSLPGKTRKSESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASIAKE 140

Query: 160 AASSIDEDTNKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRTGTSEA--------- 219
           +ASSIDE+++KDE G  SILE L E RKQ+KGKT K AG K  R  GTSE          
Sbjct: 141 SASSIDEESHKDEHGATSILETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDPSPP 200

Query: 220 -AAEFKLVRPPSNFVKRSPIP-----SPAGGNGTHL---TVENMKLKELKAVAKSRGIKG 275
            AA+FKLVRPPS FVKRSPIP     S A      L   ++ENMKL ELKA+AKSRGIKG
Sbjct: 201 PAADFKLVRPPSKFVKRSPIPPKVDASQAIAESRELKFPSIENMKLAELKALAKSRGIKG 260

[Close]

BLAST of Csor.00g298350 vs. TAIR 10
Match: AT4G18740.1 (Rho termination factor )

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-20
Identity = 72/188 (38.30%), Postives = 103/188 (54.79%), Query Frame = 0


Query: 113 GRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDTNKDED 172
           GR++K     +K    +  +   P  +NQEEII+L ++IQ+SI++  +  ++E+ N DE 
Sbjct: 70  GRSKKGCVCCKKPSDRRTSN---PSKSNQEEIISLLKRIQSSISKGESRGVEEEKNSDES 129

Query: 173 G-----TESILEALTESRKQVKGKTLKNAGVKGLRRTGTSEAAAEFKLVRPPSNFVKRSP 232
                 T++IL+ L +SRK+ +G T     VK            + +L RPPS+FVKR+P
Sbjct: 130 SKEKPLTKAILDVLEKSRKKTEGDT----SVK------EKPPKRQVELPRPPSSFVKRTP 189

Query: 233 IPSPAGGNGTHLTVEN--------------------MKLKELKAVAKSRGIKGYSKLKKN 276
           + S A G    L V N                    MKL ELK VAK+RGIKGYSKL+K+
Sbjct: 190 LSSSASGPRGKLPVSNSDKALGKLTKKEEKASLIETMKLAELKEVAKNRGIKGYSKLRKS 244

[Close]

BLAST of Csor.00g298350 vs. TAIR 10
Match: AT4G18740.2 (Rho termination factor )

HSP 1 Score: 92.8 bits (229), Expect = 4.6e-19
Identity = 66/168 (39.29%), Postives = 98/168 (58.33%), Query Frame = 0


Query: 113 GRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDTNKDED 172
           GR++K     +K    +  +   P  +NQEEII+L ++IQ+SI++  +  ++E+ N DE 
Sbjct: 70  GRSKKGCVCCKKPSDRRTSN---PSKSNQEEIISLLKRIQSSISKGESRGVEEEKNSDES 129

Query: 173 G-----TESILEALTESRKQVKGKTLKNAGVKGLRRTGTSEAAAEFKLVRPPSNFVKRSP 232
                 T++IL+ L +SRK+ +G T     VK            + +L RPPS+FVKR+P
Sbjct: 130 SKEKPLTKAILDVLEKSRKKTEGDT----SVK------EKPPKRQVELPRPPSSFVKRTP 189

Query: 233 IPSPAGGNGTHLTVENMKLKELKAVAKSRGIKGYSKLKKNELLELLTS 276
           + S A G            +ELK VAK+RGIKGYSKL+K+ELLEL+ S
Sbjct: 190 LSSSASGP-----------RELKEVAKNRGIKGYSKLRKSELLELIRS 213

[Close]

BLAST of Csor.00g298350 vs. TAIR 10
Match: AT4G18740.3 (Rho termination factor )

HSP 1 Score: 92.8 bits (229), Expect = 4.6e-19
Identity = 66/168 (39.29%), Postives = 98/168 (58.33%), Query Frame = 0


Query: 113 GRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDTNKDED 172
           GR++K     +K    +  +   P  +NQEEII+L ++IQ+SI++  +  ++E+ N DE 
Sbjct: 45  GRSKKGCVCCKKPSDRRTSN---PSKSNQEEIISLLKRIQSSISKGESRGVEEEKNSDES 104

Query: 173 G-----TESILEALTESRKQVKGKTLKNAGVKGLRRTGTSEAAAEFKLVRPPSNFVKRSP 232
                 T++IL+ L +SRK+ +G T     VK            + +L RPPS+FVKR+P
Sbjct: 105 SKEKPLTKAILDVLEKSRKKTEGDT----SVK------EKPPKRQVELPRPPSSFVKRTP 164

Query: 233 IPSPAGGNGTHLTVENMKLKELKAVAKSRGIKGYSKLKKNELLELLTS 276
           + S A G            +ELK VAK+RGIKGYSKL+K+ELLEL+ S
Sbjct: 165 LSSSASGP-----------RELKEVAKNRGIKGYSKLRKSELLELIRS 188

[Close]

BLAST of Csor.00g298350 vs. TAIR 10
Match: AT1G06190.1 (Rho termination factor )

HSP 1 Score: 43.1 bits (100), Expect = 4.1e-04
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 241 VENMKLKELKAVAKSRGIKGYSKLKKNELLELLTS 276
           +  +KL EL+ +AKSRG+KG SK+KK EL+ELL S
Sbjct: 364 LSELKLVELRGIAKSRGLKGLSKMKKAELVELLGS 398

The following BLAST results are available for this feature:

BLAST of Csor.00g298350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L4E7	4.0e-04	60.00	SAP-like protein BP-73 OS=Oryza sativa subsp. japonica OX=39947 GN=BP-73 PE=1 SV...	[more]

BLAST of Csor.00g298350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573318.1	3.50e-189	100.00	hypothetical protein SDJN03_27205, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7012488.1	6.34e-166	98.80	hypothetical protein SDJN02_25240, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022954445.1	6.10e-165	98.40	uncharacterized protein LOC111456710, partial [Cucurbita moschata]	[more]
XP_023542167.1	1.31e-159	95.62	uncharacterized protein LOC111802132, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022994883.1	2.16e-119	93.10	uncharacterized protein LOC111490473 [Cucurbita maxima]	[more]

BLAST of Csor.00g298350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSF6	2.95e-165	98.40	uncharacterized protein LOC111456710 OS=Cucurbita moschata OX=3662 GN=LOC1114567...	[more]
A0A6J1K6B8	1.05e-119	93.10	uncharacterized protein LOC111490473 OS=Cucurbita maxima OX=3661 GN=LOC111490473...	[more]
A0A6J1CF22	8.29e-83	62.41	uncharacterized protein LOC111010657 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5A7UMB7	1.04e-79	61.18	SAP-like protein BP-73 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9...	[more]
A0A1S3BFQ9	1.04e-79	61.18	SAP-like protein BP-73 OS=Cucumis melo OX=3656 GN=LOC103489342 PE=4 SV=1	[more]

BLAST of Csor.00g298350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18740.1	2.4e-20	38.30	Rho termination factor	[more]
AT4G18740.2	4.6e-19	39.29	Rho termination factor	[more]
AT4G18740.3	4.6e-19	39.29	Rho termination factor	[more]
AT1G06190.1	4.1e-04	60.00	Rho termination factor	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011112	Rho termination factor, N-terminal	PFAM	PF07498	Rho_N	coord: 242..270 e-value: 7.7E-8 score: 32.1
None	No IPR available	GENE3D	1.10.720.10		coord: 239..270 e-value: 3.6E-6 score: 28.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..141
None	No IPR available	PANTHER	PTHR34449	RHO TERMINATION FACTOR	coord: 59..275
None	No IPR available	PANTHER	PTHR34449:SF2	RHO TERMINATION FACTOR	coord: 59..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g298350.m02	Csor.00g298350.m02	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination