Csor.00g296710 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g296710
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr11: 5645083 .. 5645319 (+)
RNA-Seq ExpressionCsor.00g296710
SyntenyCsor.00g296710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCTGAATCGCGGCGCCGTCTGGCTGGTCGCCGCGGTGGTGGCGATGAGGATGAATCACGGTGGTCACCCCAGTCACGGCGTCGCCTCCGTCTCTCGGTTGGTGAGCGGGACCCACGACGGTCATCTCGGTTGCTGCGTCGTTTCCATCCCTGGGTCGACGAGCCAGACTCGCTCGGTCCATCGGTCCCCAACATGGCCCGTGCTACTCTCATCGCGTCAGTTTAAGTCGTAG

mRNA sequence

ATGAGGCTGAATCGCGGCGCCGTCTGGCTGGTCGCCGCGGTGGTGGCGATGAGGATGAATCACGGTGGTCACCCCAGTCACGGCGTCGCCTCCGTCTCTCGGTTGGTGAGCGGGACCCACGACGGTCATCTCGGTTGCTGCGTCGTTTCCATCCCTGGGTCGACGAGCCAGACTCGCTCGGTCCATCGGTCCCCAACATGGCCCGTGCTACTCTCATCGCGTCAGTTTAAGTCGTAG

Coding sequence (CDS)

ATGAGGCTGAATCGCGGCGCCGTCTGGCTGGTCGCCGCGGTGGTGGCGATGAGGATGAATCACGGTGGTCACCCCAGTCACGGCGTCGCCTCCGTCTCTCGGTTGGTGAGCGGGACCCACGACGGTCATCTCGGTTGCTGCGTCGTTTCCATCCCTGGGTCGACGAGCCAGACTCGCTCGGTCCATCGGTCCCCAACATGGCCCGTGCTACTCTCATCGCGTCAGTTTAAGTCGTAG

Protein sequence

MRLNRGAVWLVAAVVAMRMNHGGHPSHGVASVSRLVSGTHDGHLGCCVVSIPGSTSQTRSVHRSPTWPVLLSSRQFKS
Homology
BLAST of Csor.00g296710 vs. NCBI nr
Match: KAG6588345.1 (hypothetical protein SDJN03_16910, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161 bits (408), Expect = 5.34e-50
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MRLNRGAVWLVAAVVAMRMNHGGHPSHGVASVSRLVSGTHDGHLGCCVVSIPGSTSQTRS 60
          MRLNRGAVWLVAAVVAMRMNHGGHPSHGVASVSRLVSGTHDGHLGCCVVSIPGSTSQTRS
Sbjct: 1  MRLNRGAVWLVAAVVAMRMNHGGHPSHGVASVSRLVSGTHDGHLGCCVVSIPGSTSQTRS 60

Query: 61 VHRSPTWPVLLSSRQFKS 78
          VHRSPTWPVLLSSRQFKS
Sbjct: 61 VHRSPTWPVLLSSRQFKS 78

BLAST of Csor.00g296710 vs. NCBI nr
Match: KAG6588580.1 (hypothetical protein SDJN03_17145, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131 bits (330), Expect = 1.63e-37
Identity = 66/78 (84.62%), Postives = 69/78 (88.46%), Query Frame = 0

Query: 1  MRLNRGAVWLVAAVVAMRMNHGGHPSHGVASVSRLVSGTHDGHLGCCVVSIPGSTSQTRS 60
          MR+NRGAVWLVAA VAMRMNHGGHPSHGVA VSRLVSGTH+GHLG CVVS+ GSTS  RS
Sbjct: 1  MRMNRGAVWLVAAGVAMRMNHGGHPSHGVAFVSRLVSGTHNGHLGHCVVSVSGSTSGIRS 60

Query: 61 VHRSPTWPVLLSSRQFKS 78
          V RSP WPVLLSSRQ KS
Sbjct: 61 VDRSPPWPVLLSSRQRKS 78

BLAST of Csor.00g296710 vs. NCBI nr
Match: KAG6585479.1 (hypothetical protein SDJN03_18212, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113 bits (282), Expect = 8.99e-31
Identity = 58/78 (74.36%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 1  MRLNRGAVWLVAAVVAMRMNHGGHPSHGVASVSRLVSGTHDGHLGCCVVSIPGSTSQTRS 60
          M +NR AVWLVAAVVA R N GGHPSHGVASVSRLVSGT  GHLG CVV + GS S    
Sbjct: 1  MGMNRDAVWLVAAVVATRTNRGGHPSHGVASVSRLVSGTRGGHLGHCVVFVSGSMSGIHL 60

Query: 61 VHRSPTWPVLLSSRQFKS 78
          VHRSP WPVLLSSRQ +S
Sbjct: 61 VHRSPPWPVLLSSRQRRS 78

BLAST of Csor.00g296710 vs. NCBI nr
Match: KAG6585823.1 (hypothetical protein SDJN03_18556, partial [Cucurbita argyrosperma subsp. sororia] >KAG6602413.1 hypothetical protein SDJN03_07646, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111 bits (278), Expect = 3.66e-30
Identity = 57/78 (73.08%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 1  MRLNRGAVWLVAAVVAMRMNHGGHPSHGVASVSRLVSGTHDGHLGCCVVSIPGSTSQTRS 60
          M +NR AVWLVAAVVA R N GGHPSHGVASVSRLVSGT  GHLG CVV + GS S    
Sbjct: 1  MGMNRDAVWLVAAVVATRTNRGGHPSHGVASVSRLVSGTRGGHLGHCVVFVSGSMSGIHL 60

Query: 61 VHRSPTWPVLLSSRQFKS 78
          VH+SP WPVLLSSRQ +S
Sbjct: 61 VHQSPPWPVLLSSRQRRS 78

BLAST of Csor.00g296710 vs. NCBI nr
Match: KAG6605641.1 (hypothetical protein SDJN03_02958, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110 bits (276), Expect = 7.39e-30
Identity = 57/78 (73.08%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 1  MRLNRGAVWLVAAVVAMRMNHGGHPSHGVASVSRLVSGTHDGHLGCCVVSIPGSTSQTRS 60
          M + RGAVWLVAAVVA R N GGHPSHGVASVSRLVSGT  GHLG CVV + GS S    
Sbjct: 1  MGMIRGAVWLVAAVVATRTNRGGHPSHGVASVSRLVSGTRGGHLGHCVVFVSGSMSGIHL 60

Query: 61 VHRSPTWPVLLSSRQFKS 78
          VH+SP WPVLLSSRQ +S
Sbjct: 61 VHQSPPWPVLLSSRQRRS 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6588345.15.34e-50100.00hypothetical protein SDJN03_16910, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588580.11.63e-3784.62hypothetical protein SDJN03_17145, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585479.18.99e-3174.36hypothetical protein SDJN03_18212, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585823.13.66e-3073.08hypothetical protein SDJN03_18556, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6605641.17.39e-3073.08hypothetical protein SDJN03_02958, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g296710.m01Csor.00g296710.m01mRNA