Csor.00g296560 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g296560
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RNA-binding protein 7-like isoform X1
Location	Csor_Chr01: 5289971 .. 5294494 (+)
RNA-Seq Expression	Csor.00g296560
Synteny	Csor.00g296560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGAAGATCAAATGGTTGCACTATTTACATAGGTTTGTTCCTTGTTATCTCTCTTCTTCATCTTAATTCCTGTTTTCTCTTTCCTATTTCGTTTAATTTCTTCGTTTTCCTTTCATCAGGATTCTGTTCTTTGCGTTTTAAGCTATGTTTTTACTTCCTTCCTTTCGTGAAGTTCCGTATGTAAATTAGGCCTTTCGGTGGTGGATTTTCCTAAGAATTGTGTTTATTTCCTTCTATTATGTGCTACCAATGGATGTATAGGTCATAATGATATATTCATCGATTCTCTTACAAAGCTCTGCTTTGATTTTCTTTGGTGGTTGAACAGAAAGGATTGGATCGTGTGCTGGATTTCTTCCTCCCCAACTTTTTTGCTCTCTTTTAAATGCGTTTGATTCCTGTTTATAGCATAATTGATTTGATAAAGCTAAAAAGCATACTTGATTTGCTGCTTGTGGGGGGAAGAAGAATGGAAGTTGGCCTTATGTTGTGTTTGTTTCACTTAGATCTCTTAGTTAAATTTCATTTATGCTTAACTGGTTAAATCTCGATTTCACTTTGCCCACCATTTTTTATCTGCTTCTATGTAGATTTTCCTCTTATTTCTCTAATAACTGGATACTCTGCGCATGTATTCTTCCGGGGAAATTTTCTTCACCCCTCTTATCTTCTGATACGGTATCATACATTAAATTTTAAGGATGCAGCCATCCTCTTACGGTTTAGATGCTAGCTACATCTTCCTCTGAGTCTGATTTTGTTACTCTCCGCTTTCTTTAGGTAATTTGGATGAAAGGGTAAGTGATAGGGTTCTGTATGACATTCTAATTCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGTGACAAGGAATCCGGCAGGCCCAGGGGTTATGCTTTTGCAGAATATGAAAATGAGGAGATTACCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGACTCTACATAATCGTACCCTAAAGTTTGCAGTATGTTATTAATTTTTTCTTTCTCAACGCAAATTCTTCATGTTTTCTTTTATCTTGGTTTTTCTTGATCAAATTTGTTTCCTAACTTATACATGTTTTGTTTTTATATTAAAGTTTCATGTACTAAGTACATATTAATTGGTGAAGTTATCTCTGTAACAATTTAAAATAATCTAAAAATTGTATTCCTTCATATGCCTTATGTGGCATATTGCCTAACTTTTCTAAAGTTTTAGAACCACATCCCAATTATACCTATTTGTTCTAGTTATTTACAAATCATAGTTTGCATTTAGAAACAACCTTGTGTCATCATAAGTAATCAATGGGAAGAACCAAGATAATTCATGGATCAAACGTCATAGTTTATCTCACAGTGATAGACTTAATCTAGTTTAGTTTATATCACCACAAGTTTAAGTGACGAACTAAAACATTCTTGAAAAACCAAAAACAAGTTTGAACATATAATTTCATATATTAAAATGATATCTATTAGTTTTCTATAAAGTTGATGCATAATTTTTGACGTGCAAACAGGTATCTGGGCAAGACAAGCCTTCACCTAGTAGTAGTGCAATCACTTCATCATCAAATATATCTCATAAATCAAGGTTGCAGATTGTTCCAGGTTATTCTAATGAAATATCTTCATATTCCAATCGCTTGTCAAACTCGTGCAGGTTTTCTGCATACCCAGAGAACCATCTAGAAGGTGATTTTCCTGATTTTGCTTTATTTTTGTCTTTGTTTTGTTAGTTTGCTAAGAAGCTGTGTATGCTTTCACGTGCCTTTCCTACATTGGTTCAACGAATCTGTATTTCTTTTATTCAGCGCCTCCTTACCCTGGGTTAGTTAACCAATCTAATGGGTATGGATCAAATTCGGATCACCACAATAACCAATACAGTCAGAGATATTCTGGGACAAATTTGGATAGCTTTAACCATCCTAAATCACGCCGCCATGATACGAGTTATCCAGTATACTATCCTCCTTATGAACTTTTGAACTAAGGCAGCTAGCGCATACCATTTTGGTTAATCTTAATGGTGTCCTAAGTCTCAGGATAAGTTGGATCTCTTAGTTGGATGCAGAAGGTTTAGTAGAAAGGACATGGTATTTGCTATGGGCATACTGGTTCAATATATTGTCATTTTGTAGGTGTATGTATTTGTATGATTTAGCTGTGTTGTTATAGTTGATGCTCTAATTAAAGTATTGTAATCTATTTTATTAAATAGTCAGATTTTCTTCAACTCCAGTTTAATGTAATGGGAGTATAAATGATATTTTTCATGGTGACTGCAAGGAATAGCCTTTTGTTTTGTGTATATTGAATATTTATTTTTTCTTTGAAGTGTTTTACTTGATCCGATGTGTGAATGTTACTAATGTTTATACTTATGGTGGTGGCTTTATCATGTCGCCCTTTTAGAATTGGTTAATTTTAATTAAAGACAATGGGTAAGATTGTCGACCAGACTGGTTTACTTTTCAGTGAAGTGGAAGCTAAACTACTTGTTATCCTTGGCATTTTTGTTTGTGTTTATTATCATTTCTGCCTTTGGGTATGCCAGTACTCTAATACTTGGTAGGTTAAATTGTAAGGTGGCATGATCTAGCTTTGGCCTGCCCCCCTCACTATAACGCACAAGAGAACCTAGAAAAGTTCACTTTCTTCTGGGAAGAAGGAAAAGCCAAGCTCCAAAATGAGAATTGATATGACTGCTTTTGTTGCATTTTGTAGACCTAGTTCATAACATCCTTGTTTGAATTTATATATTTCAGATTTACGTTTGCTTATCAATAATTTCTTTGTTTAGCATTTCAGTTTAGAACATGCTTGAATTCTGATAAAATTTGAAAAATAAAATGAAATCTGAAAACTATTTAGAGTAGCTTAACTTTTTGGAAACATTTCGTTAGCACTACGTTATTCGATAGTAGATAAAACATTTGGTGATCAGGTTAGTGGCAAGCTCTATCCGAGGATCAATAGTAGTTTCTATCAATATTCAAGAATCTAAATGGCTTCTCTTATTTGGGCCCAAAGTTCTTGTCTGGAGTTGCCCATTGATTTTCCATTCTTTATCATTATATGAATTTGTGCATTTCCTCATTTCTTCCCGTTTTGTTGGTTGTGATATCTTTATTTGATGTGTAATACGTTTGTTTGTATGTGTATGATAAATTATCTTTCTTTGGCTGCGTTGTGAGATTTTTGGATAAGTTTGATGGAGTCATATAGCTTTAGTTAGCAAGTAGTGTTTTTGAGTGAAATCCTTTTGTATGAAGCACTAGTAGAGAAAAGTACATCGATTAAGTGCTGTCAAAGGATTTACATTTTCTTTTTCAAACAAGAAGTGAAAGTATAATGAAAAGCATCCACGTCCCAATGGATAGTACATCCGAAAGGCCTTCTAAACCTTTGGTGGTATAGGTTTGAATCCTAGTGCTTAAGTTTGCTTCTAGAGGCATATATTTTTAGTTCCGAATATATATATGTGTGATGCCATTGTCAAGAAAGTCGGAGAATGGTGGTAAACTGATGGAAATATGGAGCATGGAAATGGATGGTCATAGAACAGAGAATATGGAAGATGGACGACGAGATTCAAGCATATAGGGAATTTGATGGGTTTTGTGGTGGGACAAGGCGTTTTGTTTTGTATTTGATTTTGTGCAATCACAGAATTTGAATTGAAGGAGAGGTGCCCTGTAACTGTAATTAGTATAGCATATAGCTCATTAGGCAAGACAGTGGGTAAGCCGTGGTTTTCTGTCCGAAAGGATTACATTTCTGGCATCTTCTCTATAATTGTATTTAGAATTGTTTTTCTTTGTTAACCATCCAACTTCAAAGGCAGCAGCAGGAGGGTTGTGCTCGTTGGATGATTACAAAGAAAATCTCGAGCTTATATTGGTCATAGGTATGGTTCAAGAAGCTTGTTCGGATTGGTCACGAGCATGAGCAGAAGCTTGGAAAGCTGAGATACACACTATTTGTGAAGAGTACAATGGAATGTAAAGCAAAGCAAAGCATGTGGGTAACTTATGATTTATTAATCATACGTTTTCTTTTTTAATGGAAATCATGTATGTCAATTTATATGGGCAAGTAGCATCATTTGAATCAAGGTTAACTCTTGAGACAATGAATTCTTGGTCCCTTGTTTCCATTTGTTGGGATAAAATGTTAAAAATTAGGTTAGATTCAAAGTTTGGGTTTTCTTAATACAATAAATATAAGGAATGAGATTTGAAGCTTCAATTGTAAGAGATGCATTTATTAGGGAATAGGTTTCTTAGGCTTTTGAAGGAAGTTGACTTTTGGGTTAGCTTTGACTTGACATGATGCTTAAACGTGTAGGTTTAAGGTTTGTACAAGTCCAAGTCCAAGTCCAAGTCCAAGTCTAGCGGGCGCAACACACTTTGGGCTCGGATTCGAGGGTCTACTTTCAATCGCAATCACATGGCCTACCTCTTGGACTTGTCTCATTACATCAAGTTTGGGTCCGATTTGA

mRNA sequence

ATGTCAGGAAGATCAAATGGTTGCACTATTTACATAGGTAATTTGGATGAAAGGGTAAGTGATAGGGTTCTGTATGACATTCTAATTCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGTGACAAGGAATCCGGCAGGCCCAGGGGTTATGCTTTTGCAGAATATGAAAATGAGGAGATTACCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGACTCTACATAATCGTACCCTAAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCTAGTAGTAGTGCAATCACTTCATCATCAAATATATCTCATAAATCAAGGTTTTCTGCATACCCAGAGAACCATCTAGAAGCGCCTCCTTACCCTGGGTTAGTTAACCAATCTAATGGGTATGGATCAAATTCGGATCACCACAATAACCAATACAGTCAGAGATATTCTGGGACAAATTTGGATAGCTTTAACCATCCTAAATCACGCCGCCATGATACGAGTTATCCAGATAAGTTGGATCTCTTAGTTGGATGCAGAAGGTTTAGTAGAAAGGACATGGTATTTGCTATGGGCATACTGGTATGGTTCAAGAAGCTTGTTCGGATTGGTCACGAGCATGAGCAGAAGCTTGGAAAGCTGAGATACACACTATTTGTGAAGAGTACAATGGAATGTAAAGCAAAGCAAAGCATGTTTAAGGTTTGTACAAGTCCAAGTCCAAGTCCAAGTCCAAGTCTAGCGGGCGCAACACACTTTGGGCTCGGATTCGAGGGTCTACTTTCAATCGCAATCACATGGCCTACCTCTTGGACTTGTCTCATTACATCAAGTTTGGGTCCGATTTGA

Coding sequence (CDS)

ATGTCAGGAAGATCAAATGGTTGCACTATTTACATAGGTAATTTGGATGAAAGGGTAAGTGATAGGGTTCTGTATGACATTCTAATTCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGTGACAAGGAATCCGGCAGGCCCAGGGGTTATGCTTTTGCAGAATATGAAAATGAGGAGATTACCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGACTCTACATAATCGTACCCTAAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCTAGTAGTAGTGCAATCACTTCATCATCAAATATATCTCATAAATCAAGGTTTTCTGCATACCCAGAGAACCATCTAGAAGCGCCTCCTTACCCTGGGTTAGTTAACCAATCTAATGGGTATGGATCAAATTCGGATCACCACAATAACCAATACAGTCAGAGATATTCTGGGACAAATTTGGATAGCTTTAACCATCCTAAATCACGCCGCCATGATACGAGTTATCCAGATAAGTTGGATCTCTTAGTTGGATGCAGAAGGTTTAGTAGAAAGGACATGGTATTTGCTATGGGCATACTGGTATGGTTCAAGAAGCTTGTTCGGATTGGTCACGAGCATGAGCAGAAGCTTGGAAAGCTGAGATACACACTATTTGTGAAGAGTACAATGGAATGTAAAGCAAAGCAAAGCATGTTTAAGGTTTGTACAAGTCCAAGTCCAAGTCCAAGTCCAAGTCTAGCGGGCGCAACACACTTTGGGCTCGGATTCGAGGGTCTACTTTCAATCGCAATCACATGGCCTACCTCTTGGACTTGTCTCATTACATCAAGTTTGGGTCCGATTTGA

Protein sequence

MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYPDKLDLLVGCRRFSRKDMVFAMGILVWFKKLVRIGHEHEQKLGKLRYTLFVKSTMECKAKQSMFKVCTSPSPSPSPSLAGATHFGLGFEGLLSIAITWPTSWTCLITSSLGPI

Homology

[Close]

BLAST of Csor.00g296560 vs. ExPASy Swiss-Prot
Match: Q15427 (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-12
Identity = 30/81 (37.04%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60
          +S R+   T+Y+G LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +GY F E+ +EE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 ITNYAVKLFSGLVTLHNRTLK 82
            +YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of Csor.00g296560 vs. ExPASy Swiss-Prot
Match: Q8QZY9 (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-12
Identity = 30/81 (37.04%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60
          +S R+   T+Y+G LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +GY F E+ +EE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 ITNYAVKLFSGLVTLHNRTLK 82
            +YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of Csor.00g296560 vs. ExPASy Swiss-Prot
Match: Q6AYL5 (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-12
Identity = 30/81 (37.04%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60
          +S R+   T+Y+G LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +GY F E+ +EE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 ITNYAVKLFSGLVTLHNRTLK 82
            +YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of Csor.00g296560 vs. ExPASy Swiss-Prot
Match: O14102 (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-11
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 4  RSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEEITN 63
          R+   TIY+GNLDE+V+D +L+++ +QAG VV++HIPRD+      G+ F E+ +E+   
Sbjct: 7  RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66

Query: 64 YAVKLFSGLVTLHNRTLKFAVSGQDK 90
          YA ++ +  V L  + ++   + QD+
Sbjct: 67 YACQILN-QVKLFGKPIRVNRASQDR 91

[Close]

BLAST of Csor.00g296560 vs. ExPASy Swiss-Prot
Match: Q09442 (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-11
Identity = 28/78 (35.90%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 4  RSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEEITN 63
          R+   TIY+G LDE+VS+ +L+++++QAG VV +++P+D+ +   +G+ F E+  EE  +
Sbjct: 9  RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68

Query: 64 YAVKLFSGLVTLHNRTLK 82
          YA+K+ + ++ L+ + +K
Sbjct: 69 YAIKILN-MIKLYGKPIK 85

[Close]

BLAST of Csor.00g296560 vs. NCBI nr
Match: KAG6607531.1 (Splicing factor 3B subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 571 bits (1471), Expect = 1.77e-205
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60
           MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHLEAP 120
           ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHLEAP
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHLEAP 120

Query: 121 PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYPDKLDLLVGCRRF 180
           PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYPDKLDLLVGCRRF
Sbjct: 121 PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYPDKLDLLVGCRRF 180

Query: 181 SRKDMVFAMGILVWFKKLVRIGHEHEQKLGKLRYTLFVKSTMECKAKQSMFKVCTSPSPS 240
           SRKDMVFAMGILVWFKKLVRIGHEHEQKLGKLRYTLFVKSTMECKAKQSMFKVCTSPSPS
Sbjct: 181 SRKDMVFAMGILVWFKKLVRIGHEHEQKLGKLRYTLFVKSTMECKAKQSMFKVCTSPSPS 240

Query: 241 PSPSLAGATHFGLGFEGLLSIAITWPTSWTCLITSSLGPI 280
           PSPSLAGATHFGLGFEGLLSIAITWPTSWTCLITSSLGPI
Sbjct: 241 PSPSLAGATHFGLGFEGLLSIAITWPTSWTCLITSSLGPI 280

[Close]

BLAST of Csor.00g296560 vs. NCBI nr
Match: XP_022973397.1 (RNA-binding protein 7-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 340 bits (873), Expect = 5.78e-116
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60
           MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHLEAP 120
           ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHLEAP
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHLEAP 120

Query: 121 PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP 168
           PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP
Sbjct: 121 PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP 168

[Close]

BLAST of Csor.00g296560 vs. NCBI nr
Match: XP_022932506.1 (RNA-binding protein 7 isoform X2 [Cucurbita moschata])

HSP 1 Score: 339 bits (870), Expect = 1.65e-115
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60
           MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHLEAP 120
           ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENH+EAP
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHVEAP 120

Query: 121 PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP 168
           PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP
Sbjct: 121 PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP 168

[Close]

BLAST of Csor.00g296560 vs. NCBI nr
Match: XP_023523853.1 (splicing factor 3B subunit 4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337 bits (864), Expect = 1.36e-114
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60
           MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHLEAP 120
           ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAY ENHLEAP
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYRENHLEAP 120

Query: 121 PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP 168
           PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP
Sbjct: 121 PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP 168

[Close]

BLAST of Csor.00g296560 vs. NCBI nr
Match: XP_022973396.1 (RNA-binding protein 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 327 bits (839), Expect = 1.93e-110
Identity = 168/191 (87.96%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60
           MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSR------------ 120
           ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSR            
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 -----------FSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 168
                      FSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH
Sbjct: 121 SYSNRLSNSCRFSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

[Close]

BLAST of Csor.00g296560 vs. ExPASy TrEMBL
Match: A0A6J1I7F0 (RNA-binding protein 7-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471946 PE=4 SV=1)

HSP 1 Score: 340 bits (873), Expect = 2.80e-116
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60
           MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHLEAP 120
           ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHLEAP
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHLEAP 120

Query: 121 PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP 168
           PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP
Sbjct: 121 PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP 168

[Close]

BLAST of Csor.00g296560 vs. ExPASy TrEMBL
Match: A0A6J1EWJ3 (RNA-binding protein 7 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111438905 PE=4 SV=1)

HSP 1 Score: 339 bits (870), Expect = 8.01e-116
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60
           MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHLEAP 120
           ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENH+EAP
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHVEAP 120

Query: 121 PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP 168
           PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP
Sbjct: 121 PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP 168

[Close]

BLAST of Csor.00g296560 vs. ExPASy TrEMBL
Match: A0A6J1I8J0 (RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471946 PE=4 SV=1)

HSP 1 Score: 327 bits (839), Expect = 9.36e-111
Identity = 168/191 (87.96%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60
           MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSR------------ 120
           ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSR            
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 -----------FSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 168
                      FSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH
Sbjct: 121 SYSNRLSNSCRFSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

[Close]

BLAST of Csor.00g296560 vs. ExPASy TrEMBL
Match: A0A6J1EX61 (RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 PE=4 SV=1)

HSP 1 Score: 326 bits (836), Expect = 2.68e-110
Identity = 167/191 (87.43%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60
           MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSR------------ 120
           ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSR            
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 -----------FSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 168
                      FSAYPENH+EAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH
Sbjct: 121 SYSNRLSNSCRFSAYPENHVEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

[Close]

BLAST of Csor.00g296560 vs. ExPASy TrEMBL
Match: A0A1S3CAK8 (RNA-binding protein 7-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 268 bits (686), Expect = 5.44e-88
Identity = 136/168 (80.95%), Postives = 148/168 (88.10%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60
           MSGRS GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRFSAYPENHLEAP 120
           I NYAVKLFSGLV LH RTLKFAVSGQDKPSP S+AITSSS      RF  YPENHLEA 
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSS------RFPTYPENHLEAL 120

Query: 121 PYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYP 168
             PGLVNQ NGYGS+ D++N +YSQRYSGTNLDSFN PKSRRHD+S+P
Sbjct: 121 LNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFP 162

[Close]

BLAST of Csor.00g296560 vs. TAIR 10
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 165.2 bits (417), Expect = 7.4e-41
Identity = 99/184 (53.80%), Postives = 123/184 (66.85%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60
           MSG SN CT+YIGN+DERVSDRVLYDI+IQAGRV+DLHIPRDKE+ +P+G+AFAEYE EE
Sbjct: 1   MSGTSN-CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 60

Query: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDK-----------PSPSSSAITSSSNIS--HKS 120
           I +YAVKLFSGLV+L+NRTLKFA+SGQDK             P S A   S   +  H  
Sbjct: 61  IADYAVKLFSGLVSLYNRTLKFAISGQDKLQSNSANSGHRARPQSLAFEHSDRAAYHHLE 120

Query: 121 RFSA--------YPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPK 164
           RFS+         P ++ + PP PG+   SNG        + +YS+R  G+ LDS NH +
Sbjct: 121 RFSSQLISPPSPLPLDYTQEPPPPGV---SNG-------ASLEYSRRVLGSALDSINHSR 173

[Close]

BLAST of Csor.00g296560 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-13
Identity = 30/88 (34.09%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 4   RSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEEITN 63
           R+   T+Y+G LD ++S+ +L+++ +QAG VV++++P+D+ +   + Y F EY +EE  +
Sbjct: 21  RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80

Query: 64  YAVKLFSGLVTLHNRTLKFAVSGQDKPS 92
           YA+K+ + ++ LH + ++   + QDK S
Sbjct: 81  YAIKVLN-MIKLHGKPIRVNKASQDKKS 107

[Close]

BLAST of Csor.00g296560 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-07
Identity = 23/70 (32.86%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 2   SGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEEI 61
           SG  +G  +Y+GNL   V D  L  +  + G+VV+  +  D++SGR +G+ F  Y++ + 
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257

Query: 62  TNYAVKLFSG 72
              A+K   G
Sbjct: 258 VQNAIKSLDG 267

[Close]

BLAST of Csor.00g296560 vs. TAIR 10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 50.1 bits (118), Expect = 3.5e-06
Identity = 29/97 (29.90%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 6   NGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEEITNYA 65
           N   +Y+G +   +++  L  +  Q G +VD+++ RDK +G+ +G+AF  YE++  T  A
Sbjct: 34  NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILA 93

Query: 66  VKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSN 103
           V   +G + L  RT+K    G  K        T   N
Sbjct: 94  VDNLNGALVL-GRTIKVDHCGAYKKHEEEDEETRRQN 129

[Close]

BLAST of Csor.00g296560 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 49.7 bits (117), Expect = 4.5e-06
Identity = 31/105 (29.52%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 5   SNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEEITNY 64
           S+  ++ + N+  R +   LY +  + G+VVD+ IPRD+ +G  RG+AF  Y+ ++  + 
Sbjct: 13  SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72

Query: 65  AVKLFSG-LVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSR 109
           AV+   G +V     T++FA  G +    S   +      S +SR
Sbjct: 73  AVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSR 117

The following BLAST results are available for this feature:

BLAST of Csor.00g296560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15427	1.1e-12	37.04	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
Q8QZY9	1.1e-12	37.04	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
Q6AYL5	1.1e-12	37.04	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
O14102	1.2e-11	37.21	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]
Q09442	1.6e-11	35.90	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]

BLAST of Csor.00g296560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607531.1	1.77e-205	100.00	Splicing factor 3B subunit 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022973397.1	5.78e-116	100.00	RNA-binding protein 7-like isoform X2 [Cucurbita maxima]	[more]
XP_022932506.1	1.65e-115	99.40	RNA-binding protein 7 isoform X2 [Cucurbita moschata]	[more]
XP_023523853.1	1.36e-114	99.40	splicing factor 3B subunit 4-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022973396.1	1.93e-110	87.96	RNA-binding protein 7-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Csor.00g296560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I7F0	2.80e-116	100.00	RNA-binding protein 7-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11147194...	[more]
A0A6J1EWJ3	8.01e-116	99.40	RNA-binding protein 7 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111438905 P...	[more]
A0A6J1I8J0	9.36e-111	87.96	RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147194...	[more]
A0A6J1EX61	2.68e-110	87.43	RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 P...	[more]
A0A1S3CAK8	5.44e-88	80.95	RNA-binding protein 7-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498657 PE...	[more]

BLAST of Csor.00g296560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10110.1	7.4e-41	53.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	1.3e-13	34.09	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	1.4e-07	32.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G47120.1	3.5e-06	29.90	RNA recognition motif (RRM)-containing protein	[more]
AT5G64200.1	4.5e-06	29.52	ortholog of human splicing factor SC35	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..83 e-value: 4.8E-16 score: 69.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..81 e-value: 3.5E-13 score: 49.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..87 score: 14.760482
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..93 e-value: 7.4E-18 score: 66.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..163
None	No IPR available	PANTHER	PTHR13798:SF11	OS01G0876500 PROTEIN	coord: 1..106 coord: 91..168
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 1..106 coord: 91..168
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g296560.m01	Csor.00g296560.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding