Csor.00g296450 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g296450
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionPhloem filament protein
LocationCsor_Chr01: 5422050 .. 5423194 (-)
RNA-Seq ExpressionCsor.00g296450
SyntenyCsor.00g296450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTATTGGATTGAATTTAGGCATTAACCTCGGTTTCTTTGATCATCATGGTCGTCCACGTCTAGGGCACCATTGTCATGGAAAATGGGTAGAGATCCCAAATCTTGATTCGCCTTGCATGCAAGAAATTTCAAGATTTGCAGTCGAAGAGTACAACCATCGATATAGGAAAAATTTGACATATCAATTCATATATGCAGCTTGGTATTTGGAAGTTGATGCACGAAGTGTGAAGTACCGTCTCCATATTCAAGTGGTACGCGGCTGTGGACGTATCAAAAGGTACGAAGCTATTGTGCTTGAACGTAACTCTGATTGCGGAAGAGAAAAGATACTTGAATCCTTCAAGCGTGCATGTTGAAGAAGGGATCAAAGTTACTTTTAAAGTCATCATATCTATGTTACTTGTTATGATGTCACATAATAAAATAAAAGGAAGTCTTATAAGTAATCTTCTCCCGTGCCCAAACTATTTGTATCATTAATCAGGTTCTTACATTTCTACCGACATTTCTATTAAATTATACAAATTAATTCACGATGAAACAAAAAAGAATCGAGTTTAACCCTAACTTTATCACACGTGGGCAATTTAAGAGTTGTTTGATTGAACATAAAAATAATAAATAAATAATAATTAAAATACACACATTTTAAAAGGTGTTATCATATTTGATTCTCATATTTTTATAATTAAAGTTAGAATATTGAATGGGGTTTCCTGGTTATTTTGAGAATTTATTTTGGATAAAAAAATATATATATTTCCATCCCTTAATTTTCTTCATAACAAATTTTTATGCAATATAATTTAAAAAATAAATATTTTTCATCTCCTAATTTTCTTTGGACTCAATTATTTATTCGTGTGTTTGATTATAAATTATGAGAAAAATCCCTTCATAAAAATGGATTAGAAGTTTTTAATTATGATGAATGAACCAAGTTGATTCGAGTTATGTATAAAAAGTTATGAAAAAATAGGAAGAATCGATAAATTCGGGGTTTTTGATTGCGTAGGCAAAAGAGATGAACATGGAGGAGACACGTGCAAGCAGCAAGCAGCGCAGCAAGATTGACCTAGCAAGTGACACGCGTCATGTTATGGATGGTGCAACACGTCCGATGTCTCGAGTGATCTGA

mRNA sequence

ATGACTATTGGATTGAATTTAGGCATTAACCTCGGTTTCTTTGATCATCATGGTCGTCCACGTCTAGGGCACCATTGTCATGGAAAATGGGTAGAGATCCCAAATCTTGATTCGCCTTGCATGCAAGAAATTTCAAGATTTGCAGTCGAAGAGTACAACCATCGATATAGGAAAAATTTGACATATCAATTCATATATGCAGCTTGGTATTTGGAAGTTGATGCACGAAGTGTGAAGTACCGTCTCCATATTCAAGTGGCAAAAGAGATGAACATGGAGGAGACACGTGCAAGCAGCAAGCAGCGCAGCAAGATTGACCTAGCAAGTGACACGCGTCATGTTATGGATGGTGCAACACGTCCGATGTCTCGAGTGATCTGA

Coding sequence (CDS)

ATGACTATTGGATTGAATTTAGGCATTAACCTCGGTTTCTTTGATCATCATGGTCGTCCACGTCTAGGGCACCATTGTCATGGAAAATGGGTAGAGATCCCAAATCTTGATTCGCCTTGCATGCAAGAAATTTCAAGATTTGCAGTCGAAGAGTACAACCATCGATATAGGAAAAATTTGACATATCAATTCATATATGCAGCTTGGTATTTGGAAGTTGATGCACGAAGTGTGAAGTACCGTCTCCATATTCAAGTGGCAAAAGAGATGAACATGGAGGAGACACGTGCAAGCAGCAAGCAGCGCAGCAAGATTGACCTAGCAAGTGACACGCGTCATGTTATGGATGGTGCAACACGTCCGATGTCTCGAGTGATCTGA

Protein sequence

MTIGLNLGINLGFFDHHGRPRLGHHCHGKWVEIPNLDSPCMQEISRFAVEEYNHRYRKNLTYQFIYAAWYLEVDARSVKYRLHIQVAKEMNMEETRASSKQRSKIDLASDTRHVMDGATRPMSRVI
Homology
BLAST of Csor.00g296450 vs. NCBI nr
Match: KAG6607542.1 (hypothetical protein SDJN03_00884, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260 bits (665), Expect = 1.09e-87
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query: 1   MTIGLNLGINLGFFDHHGRPRLGHHCHGKWVEIPNLDSPCMQEISRFAVEEYNHRYRKNL 60
           MTIGLNLGINLGFFDHHGRPRLGHHCHGKWVEIPNLDSPCMQEISRFAVEEYNHRYRKNL
Sbjct: 1   MTIGLNLGINLGFFDHHGRPRLGHHCHGKWVEIPNLDSPCMQEISRFAVEEYNHRYRKNL 60

Query: 61  TYQFIYAAWYLEVDARSVKYRLHIQVAKEMNMEETRASSKQRSKIDLASDTRHVMDGATR 120
           TYQFIYAAWYLEVDARSVKYRLHIQVAKEMNMEETRASSKQRSKIDLASDTRHVMDGATR
Sbjct: 61  TYQFIYAAWYLEVDARSVKYRLHIQVAKEMNMEETRASSKQRSKIDLASDTRHVMDGATR 120

Query: 121 PMSRVI 126
           PMSRVI
Sbjct: 121 PMSRVI 126

BLAST of Csor.00g296450 vs. NCBI nr
Match: KAG6607543.1 (hypothetical protein SDJN03_00885, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 1.19e-17
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 0

Query: 3  IGLNLGINLGFFDHHGRPRLGHHCHGKWVEIPNLDSPCMQEISRFAVEEYNHRYRKNLTY 62
          +GL LG NLGF D   RP+    C+ KW+ I +L   C+ ++++FA+EE++  +R+N   
Sbjct: 5  LGLGLGFNLGFPD---RPKPDCGCNEKWIPIQDLGMECLHQVAKFALEEHHKNHRENWAL 64

Query: 63 QFIYAAWYLEVDARSVKYRLHIQVAKEM 90
          + I   WYLE+DA SVKYRLHI+V+  +
Sbjct: 65 KGISGGWYLEIDAYSVKYRLHIEVSSRL 89

BLAST of Csor.00g296450 vs. NCBI nr
Match: XP_023530188.1 (uncharacterized protein LOC111792827 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.8 bits (164), Expect = 2.99e-10
Identity = 25/57 (43.86%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 29  KWVEIPNLDSPCMQEISRFAVEEYNHRYRKNLTYQFIYAAWYLEVDARSVKYRLHIQ 85
           KW++IP++  PC+Q +++FAV+E+N +Y   L +  +Y  WY E+   S+KYRLHI+
Sbjct: 219 KWIQIPSVKEPCVQVVAKFAVDEFNRKYGNILKFDSVYEGWYWELSPNSLKYRLHIK 275

BLAST of Csor.00g296450 vs. NCBI nr
Match: KAG6588758.1 (hypothetical protein SDJN03_17323, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 4.01e-10
Identity = 24/61 (39.34%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 26 CHGKWVEIPNLDSPCMQEISRFAVEEYNHRYRKNLTYQFIYAAWYLEVDARSVKYRLHIQ 85
          C  KW++IP++   C+Q I++FAVE+YN  ++++  Y+ I   W++E+    + YRLHI+
Sbjct: 24 CPSKWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKYKSIKCGWFMELKGEDLAYRLHIE 83

BLAST of Csor.00g296450 vs. NCBI nr
Match: KAG6588835.1 (hypothetical protein SDJN03_17400, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.0 bits (162), Expect = 5.58e-10
Identity = 25/57 (43.86%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 29  KWVEIPNLDSPCMQEISRFAVEEYNHRYRKNLTYQFIYAAWYLEVDARSVKYRLHIQ 85
           KW++IP++  PC+Q ++ FAV+E+N +Y   L +  +Y  WY E+   S+KYRLHI+
Sbjct: 219 KWIQIPSVKEPCVQVVAEFAVDEFNRKYGNILKFNSVYEGWYWELSPNSLKYRLHIK 275

BLAST of Csor.00g296450 vs. ExPASy TrEMBL
Match: A0A6J1EIQ8 (uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC111434517 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.70e-10
Identity = 25/57 (43.86%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 29  KWVEIPNLDSPCMQEISRFAVEEYNHRYRKNLTYQFIYAAWYLEVDARSVKYRLHIQ 85
           KW++IP++  PC+Q ++ FAV+E+N +Y   L +  +Y  WY E+   S+KYRLHI+
Sbjct: 219 KWIQIPSVKEPCVQVVAEFAVDEFNRKYGNILKFNSVYEGWYWELSPNSLKYRLHIK 275

BLAST of Csor.00g296450 vs. ExPASy TrEMBL
Match: A0A0A0K7B3 (Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G222870 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.31e-08
Identity = 22/58 (37.93%), Postives = 40/58 (68.97%), Query Frame = 0

Query: 29 KWVEIPNLDSPCMQEISRFAVEEYNHRYRKNLTYQFIYAAWYLEVDARSVKYRLHIQV 86
          KW++IP+  +PC+ ++ ++AV++YN  ++ NL ++ +   WYLE+D    K RL I+V
Sbjct: 9  KWIQIPDTKTPCVIDLGKYAVDDYNKAHKDNLVFKKVIIGWYLEIDYDKTKLRLIIEV 66

BLAST of Csor.00g296450 vs. ExPASy TrEMBL
Match: A0A6J1ELQ9 (uncharacterized protein LOC111434515 OS=Cucurbita moschata OX=3662 GN=LOC111434515 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.70e-08
Identity = 23/57 (40.35%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 29 KWVEIPNLDSPCMQEISRFAVEEYNHRYRKNLTYQFIYAAWYLEVDARSVKYRLHIQ 85
          KW++IP++ S C+QE+++ AVE++N ++  +L Y+ I+  W+ E+   ++KYRLHI+
Sbjct: 16 KWIKIPDVSSHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWFCELGQNNLKYRLHIR 72

BLAST of Csor.00g296450 vs. ExPASy TrEMBL
Match: A0A6J1EQ39 (uncharacterized protein LOC111434636 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434636 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.72e-08
Identity = 23/57 (40.35%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 29 KWVEIPNLDSPCMQEISRFAVEEYNHRYRKNLTYQFIYAAWYLEVDARSVKYRLHIQ 85
          KW++IP++   C+QE+++ AVE++N ++  +L Y+ I+  WY E+   ++KYRLHI+
Sbjct: 16 KWIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWYCELGQNNLKYRLHIR 72

BLAST of Csor.00g296450 vs. ExPASy TrEMBL
Match: A0A6J1EI90 (uncharacterized protein LOC111434592 OS=Cucurbita moschata OX=3662 GN=LOC111434592 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.72e-08
Identity = 23/57 (40.35%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 29 KWVEIPNLDSPCMQEISRFAVEEYNHRYRKNLTYQFIYAAWYLEVDARSVKYRLHIQ 85
          KW++IP++   C+QE+++ AVE++N ++  +L Y+ I+  WY E+   ++KYRLHI+
Sbjct: 16 KWIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWYCELGQNNLKYRLHIR 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6607542.11.09e-87100.00hypothetical protein SDJN03_00884, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607543.11.19e-1744.32hypothetical protein SDJN03_00885, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023530188.12.99e-1043.86uncharacterized protein LOC111792827 [Cucurbita pepo subsp. pepo][more]
KAG6588758.14.01e-1039.34hypothetical protein SDJN03_17323, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588835.15.58e-1043.86hypothetical protein SDJN03_17400, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1EIQ82.70e-1043.86uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC1114345... [more]
A0A0A0K7B31.31e-0837.93Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G222870 PE=4 SV=1[more]
A0A6J1ELQ91.70e-0840.35uncharacterized protein LOC111434515 OS=Cucurbita moschata OX=3662 GN=LOC1114345... [more]
A0A6J1EQ391.72e-0840.35uncharacterized protein LOC111434636 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1EI901.72e-0840.35uncharacterized protein LOC111434592 OS=Cucurbita moschata OX=3662 GN=LOC1114345... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009994Phloem filament PP1PFAMPF07430PP1coord: 39..87
e-value: 1.7E-12
score: 47.2
NoneNo IPR availableGENE3D3.10.450.10coord: 23..111
e-value: 4.0E-9
score: 38.5
NoneNo IPR availableSUPERFAMILY54403Cystatin/monellincoord: 28..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g296450.m01Csor.00g296450.m01mRNA