Csor.00g295980 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g295980
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr05: 3867190 .. 3867534 (-)
RNA-Seq ExpressionCsor.00g295980
SyntenyCsor.00g295980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGGGAGTCCGAGAGTTCAAGAATGGCAACGGAAGGTTGGGAGTTCAAGAATGGGAATGGAAGTTCAAGAGTTCAAGACTTGCAATGGGAGTTCAAAAATGGCAACGAGAGTTCAAGAGTTCAAGAATGGCAACGAGCGGTCGGGAGTTCAAGAATGGAAATGGAAGTTTGAGAGTTAAAGTATGGCAACAAGAGTTCGAGAGTTCAAGAATGACAACGAGAGTTCAGGAGTTCAAAAATGGCAACGGGAGTTTGGAGTTCAAAAATGGCAACTGGAGTTTGGAGTTCAAGAATGGCAACGAAAAGTTCAGGAGTTCAAGAAGGGCAATGAGAGTTTAG

mRNA sequence

ATGGCAATGGGAGTCCGAGAGTTCAAGAATGGCAACGGAAGGTTGGGAGTTCAAGAATGGGAATGGAAGTTCAAGAGTTCAAGACTTGCAATGGGAGTTCAAAAATGGCAACGAGAGTTCAAGAGTTCAAGAATGGCAACGAGCGGTCGGGAGTTCAAGAATGGAAATGGAAGTTTGAGAGTTAAAGTATGGCAACAAGAGTTCGAGAGTTCAAGAATGACAACGAGAGTTCAGGAGTTCAAAAATGGCAACGGGAGTTTGGAGTTCAAAAATGGCAACTGGAGTTTGGAGTTCAAGAATGGCAACGAAAAGTTCAGGAGTTCAAGAAGGGCAATGAGAGTTTAG

Coding sequence (CDS)

ATGGCAATGGGAGTCCGAGAGTTCAAGAATGGCAACGGAAGGTTGGGAGTTCAAGAATGGGAATGGAAGTTCAAGAGTTCAAGACTTGCAATGGGAGTTCAAAAATGGCAACGAGAGTTCAAGAGTTCAAGAATGGCAACGAGCGGTCGGGAGTTCAAGAATGGAAATGGAAGTTTGAGAGTTAAAGTATGGCAACAAGAGTTCGAGAGTTCAAGAATGACAACGAGAGTTCAGGAGTTCAAAAATGGCAACGGGAGTTTGGAGTTCAAAAATGGCAACTGGAGTTTGGAGTTCAAGAATGGCAACGAAAAGTTCAGGAGTTCAAGAAGGGCAATGAGAGTTTAG

Protein sequence

MAMGVREFKNGNGRLGVQEWEWKFKSSRLAMGVQKWQREFKSSRMATSGREFKNGNGSLRVKVWQQEFESSRMTTRVQEFKNGNGSLEFKNGNWSLEFKNGNEKFRSSRRAMRV
Homology
[Close]
BLAST of Csor.00g295980 vs. NCBI nr
Match: KAG6598885.1 (hypothetical protein SDJN03_08663, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231 bits (588), Expect = 2.51e-76
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MAMGVREFKNGNGRLGVQEWEWKFKSSRLAMGVQKWQREFKSSRMATSGREFKNGNGSLR 60
           MAMGVREFKNGNGRLGVQEWEWKFKSSRLAMGVQKWQREFKSSRMATSGREFKNGNGSLR
Sbjct: 1   MAMGVREFKNGNGRLGVQEWEWKFKSSRLAMGVQKWQREFKSSRMATSGREFKNGNGSLR 60

Query: 61  VKVWQQEFESSRMTTRVQEFKNGNGSLEFKNGNWSLEFKNGNEKFRSSRRAMRV 114
           VKVWQQEFESSRMTTRVQEFKNGNGSLEFKNGNWSLEFKNGNEKFRSSRRAMRV
Sbjct: 61  VKVWQQEFESSRMTTRVQEFKNGNGSLEFKNGNWSLEFKNGNEKFRSSRRAMRV 114

[Close]
BLAST of Csor.00g295980 vs. NCBI nr
Match: KAG6598884.1 (hypothetical protein SDJN03_08662, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.1 bits (144), Expect = 1.04e-08
Identity = 41/99 (41.41%), Postives = 46/99 (46.46%), Query Frame = 0 

Query: 1  MAMGVREFKNGNGRLGVQEWEWKFKSSRLAMGVQKWQREFKSSRMATSGREFKNGNGSLR 60
          M    R+FKN N R GVQEW                Q EF + RM T GR+FKNGNG   
Sbjct: 1  MTTRGRDFKNDNERSGVQEW----------------QLEFWTLRMTTGGRKFKNGNGRSG 60

Query: 61 VKVWQQEFESSRMTTRVQEFKNGNGSLEFKNGNWSLEFK 99
          V+ WQ+EF            KNGNGSL    G W    K
Sbjct: 61 VQEWQREF------------KNGNGSLRMTMG-WQCVIK 70

The following BLAST results are available for this feature:
BLAST of Csor.00g295980 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g295980 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6598885.12.51e-76100.00hypothetical protein SDJN03_08663, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6598884.11.04e-0841.41hypothetical protein SDJN03_08662, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g295980 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g295980 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g295980.m01Csor.00g295980.m01mRNA