Csor.00g295950 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g295950
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S acidic ribosomal protein P3
Location	Csor_Chr05: 3858749 .. 3859746 (+)
RNA-Seq Expression	Csor.00g295950
Synteny	Csor.00g295950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTTTTCACCTTCATCTGTCGGAGCTCCGGTGGCAAGTGGACTGCCAATCAGTATTCGGGTGACCTTGAAGGCTCTGCCGATTCCACCTACGATCTCCAGAGGACGCTCGTTCAGAATGTTCTCTCCGTCGATTGCTCCGGTGGTGTTCAGTCCTCTTTCTCTTATGTCACTCCCACCTCCGCCGTTTTCCAGGTATCCATTGTTTTCTCCTCTATTCCAGTTTGTCTTGTGGATTCTTCGAATACTTCTGATTTTATTATTCGTTGTTCTCGATCTAATGTTCAAAAAAATGCTCCCCTTCTAAATGTAATCAATGTTTATTTGATTGTTTAGTCTGGTTACTAATGTTTTTGTCAATATGAATAGTGATCTTTTACCTTTCCTGTGCAATGAGGGTCGATCCTTTTTTTGGTCTATTTGATCTATAGGTTGGCGTTTAACAATTGCGATTATGGGTTTATGGGTACATGATTGATTAAGCAACTATTAATTGAGGGAATTTTCCAAATATATAGGTTTATAATGAACTAAAGCAATGTTGGTAATTATATTTTTAGTATGTTCATTGGTGAGTTCCTTGATTGGTATAACTTATCTGCATTCTCTCATTGAATTTTACATTTTCTGGATAAACATGGATTTATAAAAATATATATTTGTGTAATTCCTTGTTAGAGGTAGTCTGAATTTGTAGAGGTATTTGGAAGAAGTTGATTTGAAAGTATTTATGATTTATGATATCTCTTCAATGTCTCAATTTGCTTCCTCCCTGCTTGCCTGTTGTTACCCGTTGTGCATGCCTTGTTTAAACATTAGTATTTCAGGTGATCATTGGCGGCAGTAGTGGTGGCGGTTTCATCGGCGGTGGAGGAGCTGCAGCCGCCCCTGCTGGAGGAGATGCACCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAGGAGAGTGATGACGACGACCTTGGCTTTTCACTTTTTGATTAA

mRNA sequence

ATGGGAGTTTTCACCTTCATCTGTCGGAGCTCCGGTGGCAAGTGGACTGCCAATCAGTATTCGGGTGACCTTGAAGGCTCTGCCGATTCCACCTACGATCTCCAGAGGACGCTCGTTCAGAATGTTCTCTCCGTCGATTGCTCCGGTGGTGTTCAGTCCTCTTTCTCTTATGTCACTCCCACCTCCGCCGTTTTCCAGGTGATCATTGGCGGCAGTAGTGGTGGCGGTTTCATCGGCGGTGGAGGAGCTGCAGCCGCCCCTGCTGGAGGAGATGCACCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAGGAGAGTGATGACGACGACCTTGGCTTTTCACTTTTTGATTAA

Coding sequence (CDS)

ATGGGAGTTTTCACCTTCATCTGTCGGAGCTCCGGTGGCAAGTGGACTGCCAATCAGTATTCGGGTGACCTTGAAGGCTCTGCCGATTCCACCTACGATCTCCAGAGGACGCTCGTTCAGAATGTTCTCTCCGTCGATTGCTCCGGTGGTGTTCAGTCCTCTTTCTCTTATGTCACTCCCACCTCCGCCGTTTTCCAGGTGATCATTGGCGGCAGTAGTGGTGGCGGTTTCATCGGCGGTGGAGGAGCTGCAGCCGCCCCTGCTGGAGGAGATGCACCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAGGAGAGTGATGACGACGACCTTGGCTTTTCACTTTTTGATTAA

Protein sequence

MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLFD

Homology

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BLAST of Csor.00g295950 vs. ExPASy Swiss-Prot
Match: Q9LVC9 (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.0e-32
Identity = 78/120 (65.00%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVF+F+C+S GG+WTA Q+ GDLE SA STYDLQR LVQ  LS D SGGVQSSFS V+P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVF V+IGG  GGGF  GGGAAA   GG   AAA    EKK+E  EE ++ D GF LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEE-EEGDFGFDLF 119

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BLAST of Csor.00g295950 vs. ExPASy Swiss-Prot
Match: Q9SVZ6 (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-29
Identity = 72/120 (60.00%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+C++ GG W+A Q+ G+LE SA STY+LQR LVQ  LS D SGGVQSSFS V+P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVFQVI+GG  GGGF  GG A++    G+A AA +   +KKEE +EE  + D GF LF
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGGAASSGGGAGEAAAAPKEDEKKKEESEEE--EGDFGFDLF 118

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BLAST of Csor.00g295950 vs. ExPASy Swiss-Prot
Match: P56724 (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 128.6 bits (322), Expect = 4.6e-29
Identity = 79/123 (64.23%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGV+TF+CRSSG +WTA Q  G+LE SA + Y+LQR LV    + D + GVQSSFS V+P
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAP--AEKKEEVKEESDDDDLGFS 120
           +SAVFQVIIG   GG  IGGG AA A +GG   AAAEAP   EKKEE KEES +DDLGFS
Sbjct: 61  SSAVFQVIIGAVGGGAAIGGGAAAGAASGG---AAAEAPKAEEKKEEEKEES-EDDLGFS 119

Query: 121 LFD 122
           LFD
Sbjct: 121 LFD 119

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BLAST of Csor.00g295950 vs. ExPASy Swiss-Prot
Match: O24413 (60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-28
Identity = 72/123 (58.54%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGV+TF+CR++GG+WTA Q+SG++E SA + Y+LQR LV    + D   GVQSSFS VTP
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61  TSAVFQVIIGGSSGGGFI--GGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFS 120
           +SAVFQVI+G   GG  +  GGGG  AA +GG   AAAEAP E+K+E ++E  DDD+GFS
Sbjct: 61  SSAVFQVIVGAVGGGAMMVSGGGGGGAAASGG---AAAEAPKEEKKEEEKEESDDDMGFS 120

Query: 121 LFD 122
           LFD
Sbjct: 121 LFD 120

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BLAST of Csor.00g295950 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.2e-04
Identity = 37/58 (63.79%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 64  VFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLFD 122
           V  +I+   SGGG      AAAAPAGG A AAA A  EKKEE KEES DDD+GFSLFD
Sbjct: 55  VEDLILSVGSGGG--AAPVAAAAPAGGAAAAAAPAVEEKKEEAKEES-DDDMGFSLFD 109

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BLAST of Csor.00g295950 vs. NCBI nr
Match: XP_022929782.1 (60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S acidic ribosomal protein P3-2-like [Cucurbita maxima] >XP_023521367.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >XP_023545674.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >KAG6598882.1 60S acidic ribosomal protein P3-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029833.1 60S acidic ribosomal protein P3-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229 bits (585), Expect = 1.21e-75
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

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BLAST of Csor.00g295950 vs. NCBI nr
Match: XP_038889531.1 (60S acidic ribosomal protein P3-2 [Benincasa hispida])

HSP 1 Score: 204 bits (519), Expect = 1.45e-65
Identity = 108/122 (88.52%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGG-AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSL 120
           TSAVFQVI+GG  GGGFIGGGG AAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLG SL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

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BLAST of Csor.00g295950 vs. NCBI nr
Match: XP_008451467.1 (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa] >TYK01401.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa])

HSP 1 Score: 202 bits (515), Expect = 5.53e-65
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVFQVI+GG  GGGFIGGG AAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLG SLF
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGG-AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

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BLAST of Csor.00g295950 vs. NCBI nr
Match: XP_004148320.1 (60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical protein Csa_021210 [Cucumis sativus])

HSP 1 Score: 201 bits (511), Expect = 2.33e-64
Identity = 105/121 (86.78%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           +SAVFQVI+GG SGGGF  GGGAAAAPAGG APAAAEAPAEKKEEVKEESDD+DLG SLF
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

[Close]

BLAST of Csor.00g295950 vs. NCBI nr
Match: XP_023537756.1 (60S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo] >KAG6586095.1 60S acidic ribosomal protein P3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020919.1 60S acidic ribosomal protein P3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186 bits (473), Expect = 1.40e-58
Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+CR SGG+WTANQYSGDLEGSA STYDLQR LV + LSVD SGGVQSSFSYV+P
Sbjct: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           +SAVFQVIIGG+SGGG I GG AAAAPAGG APAA EAPA  KEEVKEESDDDDLGFSLF
Sbjct: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAA-EAPAPAKEEVKEESDDDDLGFSLF 120

[Close]

BLAST of Csor.00g295950 vs. ExPASy TrEMBL
Match: A0A6J1KB28 (60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492258 PE=4 SV=1)

HSP 1 Score: 229 bits (585), Expect = 5.85e-76
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

[Close]

BLAST of Csor.00g295950 vs. ExPASy TrEMBL
Match: A0A6J1ENN1 (60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111436268 PE=4 SV=1)

HSP 1 Score: 229 bits (585), Expect = 5.85e-76
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

[Close]

BLAST of Csor.00g295950 vs. ExPASy TrEMBL
Match: A0A5D3BNN6 (60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00960 PE=4 SV=1)

HSP 1 Score: 202 bits (515), Expect = 2.68e-65
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVFQVI+GG  GGGFIGGG AAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLG SLF
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGG-AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

[Close]

BLAST of Csor.00g295950 vs. ExPASy TrEMBL
Match: A0A1S3BRK9 (60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 SV=1)

HSP 1 Score: 202 bits (515), Expect = 2.68e-65
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVFQVI+GG  GGGFIGGG AAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLG SLF
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGG-AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

[Close]

BLAST of Csor.00g295950 vs. ExPASy TrEMBL
Match: A0A0A0LJB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1)

HSP 1 Score: 201 bits (511), Expect = 1.13e-64
Identity = 105/121 (86.78%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           +SAVFQVI+GG SGGGF  GGGAAAAPAGG APAAAEAPAEKKEEVKEESDD+DLG SLF
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

[Close]

BLAST of Csor.00g295950 vs. TAIR 10
Match: AT5G57290.1 (60S acidic ribosomal protein family )

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-33
Identity = 78/120 (65.00%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVF+F+C+S GG+WTA Q+ GDLE SA STYDLQR LVQ  LS D SGGVQSSFS V+P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVF V+IGG  GGGF  GGGAAA   GG   AAA    EKK+E  EE ++ D GF LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEE-EEGDFGFDLF 119

[Close]

BLAST of Csor.00g295950 vs. TAIR 10
Match: AT5G57290.3 (60S acidic ribosomal protein family )

HSP 1 Score: 136.0 bits (341), Expect = 2.1e-32
Identity = 78/120 (65.00%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVF+F+C+S GG+WTA Q+ GDLE SA STYDLQR LVQ  LS D SGGVQSSFS V+P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVF V+IGG  GGGF  GGGAAA   GG   AAA    EKK+E  EE ++ D GF LF
Sbjct: 61  TSAVF-VVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEE-EEGDFGFDLF 118

[Close]

BLAST of Csor.00g295950 vs. TAIR 10
Match: AT4G25890.1 (60S acidic ribosomal protein family )

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-30
Identity = 72/120 (60.00%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+C++ GG W+A Q+ G+LE SA STY+LQR LVQ  LS D SGGVQSSFS V+P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVFQVI+GG  GGGF  GG A++    G+A AA +   +KKEE +EE  + D GF LF
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGGAASSGGGAGEAAAAPKEDEKKKEESEEE--EGDFGFDLF 118

[Close]

BLAST of Csor.00g295950 vs. TAIR 10
Match: AT5G57290.2 (60S acidic ribosomal protein family )

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-27
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGVF+F+C+S GG+WTA Q+ GDLE SA STYDLQR LVQ  LS D SGGVQSSFS V+P
Sbjct: 1  MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61 TSAVFQVIIGGSSGGGFIGGGG 83
          TSAVF V+IGG  GGGF  GGG
Sbjct: 61 TSAVFVVVIGGGGGGGFAAGGG 82

The following BLAST results are available for this feature:

BLAST of Csor.00g295950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVC9	2.0e-32	65.00	60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 ...	[more]
Q9SVZ6	1.6e-29	60.00	60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 ...	[more]
P56724	4.6e-29	64.23	60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06...	[more]
O24413	1.0e-28	58.54	60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3	[more]
P52855	5.2e-04	63.79	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]

BLAST of Csor.00g295950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929782.1	1.21e-75	100.00	60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S ...	[more]
XP_038889531.1	1.45e-65	88.52	60S acidic ribosomal protein P3-2 [Benincasa hispida]	[more]
XP_008451467.1	5.53e-65	88.43	PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S ac...	[more]
XP_004148320.1	2.33e-64	86.78	60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical pro...	[more]
XP_023537756.1	1.40e-58	84.30	60S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo] >KAG6586095.1 60S a...	[more]

BLAST of Csor.00g295950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KB28	5.85e-76	100.00	60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC1114922...	[more]
A0A6J1ENN1	5.85e-76	100.00	60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A5D3BNN6	2.68e-65	88.43	60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BRK9	2.68e-65	88.43	60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 S...	[more]
A0A0A0LJB2	1.13e-64	86.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1	[more]

BLAST of Csor.00g295950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57290.1	1.4e-33	65.00	60S acidic ribosomal protein family	[more]
AT5G57290.3	2.1e-32	65.00	60S acidic ribosomal protein family	[more]
AT4G25890.1	1.1e-30	60.00	60S acidic ribosomal protein family	[more]
AT5G57290.2	1.5e-27	71.95	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 70..120 e-value: 1.7E-11 score: 44.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..121
IPR044252	60S acidic ribosomal protein P3-like	PANTHER	PTHR47207	60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED	coord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g295950.m01	Csor.00g295950.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome