Csor.00g295030 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g295030
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr05: 3188586 .. 3188927 (+)
RNA-Seq Expression	Csor.00g295030
Synteny	Csor.00g295030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGACTTGGATCGCTTTGCTCAATGCAATGAAGTATCAAATGAGGAACCAAATGCGGATGTTTCTTGGAAAGATAGATATGTGTACCTTAAAAAGTATGGTGCCCCCGGGTTCTGGATGTCACTCTATAGCAGCTCCTCTTTGCGTATGTTGTTTGCTTCTTACCGCTGTGTGGAGAGGATATTACCAATACAGTCTCAAATGGGGGGCAGGATATCATTAGAAGATGGTAGGAACAATGCTTCTTCCCTCGACCCACAATCAACTCAAGTAACTCAGAAGCTGAAAGATGACTTCAAGGAAAGGCAACAGCGGCAGAAGAACGATGTGAGGTGTTAA

mRNA sequence

ATGTTCGACTTGGATCGCTTTGCTCAATGCAATGAAGTATCAAATGAGGAACCAAATGCGGATGTTTCTTGGAAAGATAGATATGTGTACCTTAAAAAGTATGGTGCCCCCGGGTTCTGGATGTCACTCTATAGCAGCTCCTCTTTGCGTATGTTGTTTGCTTCTTACCGCTGTGTGGAGAGGATATTACCAATACAGTCTCAAATGGGGGGCAGGATATCATTAGAAGATGGTAGGAACAATGCTTCTTCCCTCGACCCACAATCAACTCAAGTAACTCAGAAGCTGAAAGATGACTTCAAGGAAAGGCAACAGCGGCAGAAGAACGATGTGAGGTGTTAA

Coding sequence (CDS)

ATGTTCGACTTGGATCGCTTTGCTCAATGCAATGAAGTATCAAATGAGGAACCAAATGCGGATGTTTCTTGGAAAGATAGATATGTGTACCTTAAAAAGTATGGTGCCCCCGGGTTCTGGATGTCACTCTATAGCAGCTCCTCTTTGCGTATGTTGTTTGCTTCTTACCGCTGTGTGGAGAGGATATTACCAATACAGTCTCAAATGGGGGGCAGGATATCATTAGAAGATGGTAGGAACAATGCTTCTTCCCTCGACCCACAATCAACTCAAGTAACTCAGAAGCTGAAAGATGACTTCAAGGAAAGGCAACAGCGGCAGAAGAACGATGTGAGGTGTTAA

Protein sequence

MFDLDRFAQCNEVSNEEPNADVSWKDRYVYLKKYGAPGFWMSLYSSSSLRMLFASYRCVERILPIQSQMGGRISLEDGRNNASSLDPQSTQVTQKLKDDFKERQQRQKNDVRC

Homology

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BLAST of Csor.00g295030 vs. NCBI nr
Match: KAG6598790.1 (hypothetical protein SDJN03_08568, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229 bits (584), Expect = 9.49e-76
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MFDLDRFAQCNEVSNEEPNADVSWKDRYVYLKKYGAPGFWMSLYSSSSLRMLFASYRCVE 60
           MFDLDRFAQCNEVSNEEPNADVSWKDRYVYLKKYGAPGFWMSLYSSSSLRMLFASYRCVE
Sbjct: 1   MFDLDRFAQCNEVSNEEPNADVSWKDRYVYLKKYGAPGFWMSLYSSSSLRMLFASYRCVE 60

Query: 61  RILPIQSQMGGRISLEDGRNNASSLDPQSTQVTQKLKDDFKERQQRQKNDVRC 113
           RILPIQSQMGGRISLEDGRNNASSLDPQSTQVTQKLKDDFKERQQRQKNDVRC
Sbjct: 61  RILPIQSQMGGRISLEDGRNNASSLDPQSTQVTQKLKDDFKERQQRQKNDVRC 113

The following BLAST results are available for this feature:

BLAST of Csor.00g295030 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g295030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598790.1	9.49e-76	100.00	hypothetical protein SDJN03_08568, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g295030 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g295030 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g295030.m01	Csor.00g295030.m01	mRNA