Csor.00g294540 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g294540
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr05: 2892701 .. 2893294 (-)
RNA-Seq Expression	Csor.00g294540
Synteny	Csor.00g294540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACAAAACGACCACACCGGACAAACCTCCAAAAGGAGGGGCAGTGGAGAGAGGGAAAAAAAAAGTCAGAAGGGTGAAATTACGGAAAAGCCCTTCGTCTATTTCCCACCAACACGTTCGTAGCGCAGAGAAGGACCAGGAATTGGGGAGACGTGTACAACTGCCGCCCCATCCGGAGACTCCGCTCCGGATGGTGCTTGCTTGACCTCCGGACTTCCGTTGAGGAACATTTCTGGCTCAATCCATCACAAGAAGAGAGAGAAAGAAAAAACAGAAGAACGAGAAAGCCACAAGTCTCTGTTGCATCTTACGCTTCTTGGAGGGAAAAAAAGAAACAAAAAGTTATTTCCCTCTCTCTTTTGCTCTTTTCAAATTGACTACAAGAGGTATTGTTTCCGATTCGGTTGTGCTTTGGAATCGTTTTAATAATCGTACATTGTTGTTTTCGTCTCGCGGAATGAAACGCATGATGTCGTAAGCTTTGATTCTGTTATATCTGGTTTATCTGCGGATGTTTCTGCTGCATTTTGATAATGATGATCAGTAGTTGTTGCAGTGATTTTCGGTCGATTGATTTGATTGATGATTGA

mRNA sequence

ATGGGAACAAAACGACCACACCGGACAAACCTCCAAAAGGAGGGGCAGTGGAGAGAGGGAAAAAAAAAAGAAGGACCAGGAATTGGGGAGACGTGTACAACTGCCGCCCCATCCGGAGACTCCGCTCCGGATGGTGCTTGCTTGACCTCCGGACTTCCGTTGAGGAACATTTCTGGCTCAATCCATCACAAGAAGAGAGAGAAAGAAAAAACAGAAGAACGAGAAAGCCACAAGTCTCTGTTGCATCTTACGCTTCTTGGAGGGAAAAAAAGAAACAAAAAGTTATTTCCCTCTCTCTTTTGCTCTTTTCAAATTGACTACAAGAGTGATTTTCGGTCGATTGATTTGATTGATGATTGA

Coding sequence (CDS)

ATGGGAACAAAACGACCACACCGGACAAACCTCCAAAAGGAGGGGCAGTGGAGAGAGGGAAAAAAAAAAGAAGGACCAGGAATTGGGGAGACGTGTACAACTGCCGCCCCATCCGGAGACTCCGCTCCGGATGGTGCTTGCTTGACCTCCGGACTTCCGTTGAGGAACATTTCTGGCTCAATCCATCACAAGAAGAGAGAGAAAGAAAAAACAGAAGAACGAGAAAGCCACAAGTCTCTGTTGCATCTTACGCTTCTTGGAGGGAAAAAAAGAAACAAAAAGTTATTTCCCTCTCTCTTTTGCTCTTTTCAAATTGACTACAAGAGTGATTTTCGGTCGATTGATTTGATTGATGATTGA

Protein sequence

MGTKRPHRTNLQKEGQWREGKKKEGPGIGETCTTAAPSGDSAPDGACLTSGLPLRNISGSIHHKKREKEKTEERESHKSLLHLTLLGGKKRNKKLFPSLFCSFQIDYKSDFRSIDLIDD

Homology

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BLAST of Csor.00g294540 vs. NCBI nr
Match: KAG6598742.1 (hypothetical protein SDJN03_08520, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241 bits (616), Expect = 1.94e-80
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MGTKRPHRTNLQKEGQWREGKKKEGPGIGETCTTAAPSGDSAPDGACLTSGLPLRNISGS 60
           MGTKRPHRTNLQKEGQWREGKKKEGPGIGETCTTAAPSGDSAPDGACLTSGLPLRNISGS
Sbjct: 1   MGTKRPHRTNLQKEGQWREGKKKEGPGIGETCTTAAPSGDSAPDGACLTSGLPLRNISGS 60

Query: 61  IHHKKREKEKTEERESHKSLLHLTLLGGKKRNKKLFPSLFCSFQIDYKSDFRSIDLIDD 119
           IHHKKREKEKTEERESHKSLLHLTLLGGKKRNKKLFPSLFCSFQIDYKSDFRSIDLIDD
Sbjct: 61  IHHKKREKEKTEERESHKSLLHLTLLGGKKRNKKLFPSLFCSFQIDYKSDFRSIDLIDD 119

The following BLAST results are available for this feature:

BLAST of Csor.00g294540 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g294540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598742.1	1.94e-80	100.00	hypothetical protein SDJN03_08520, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g294540 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g294540 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g294540.m01	Csor.00g294540.m01	mRNA