Csor.00g294400 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g294400
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Ribosomal RNA small subunit methyltransferase A
Location	Csor_Chr05: 2795054 .. 2796441 (-)
RNA-Seq Expression	Csor.00g294400
Synteny	Csor.00g294400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGCGTAGTGGGAAGCATAAAGAACCTCAAAGCTCTAATGGGGGTTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACAGATACTCTAAAATTTTCTTTAGTTAATGGGGCCAGCATATCATCCTCGTCTAGAAGGGTGAAACGGAAATGGCATAGTCGGGAAGAGAGGAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGGTGCATGTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCATGGACCTGGATTCCAGAGTGATGATGACTCGGATAACAGTTTTGCAGTGCTGGTTCCATGTTATGCACGCATTTACAATGATTTTGTGGATGAAACTAAGATCAGTGTCCTAAGTGCTGTTGGGAACATCAGCGACAGCTTTTCTACTGGTAAGAGTTGTTTCTTCTCAAGCTTGCCTTTCGATTCGTGTTGCGTGTTAGTTATTGCTTTTGCCTCCCAAAATAATCTTCTAGTCCTCTTTCGTAAATAGTGAACTCAATAACTTCGTTCATTTCCTATGATAGTTTAATTTCATTGCCCACGATCGAACTTATAATGTACATCAGGTCCGTATTCCAAACAAGAAAAAACTTTTATGTAATTTAATTGTTATCTCATATTCATAGACCCTTAATTTTTTTAGGATGATTATACTATTTCCTTTTCTGAATCAGTCTCGGGAGTCTTGTGAGACTTCATCTCTAAGAAATATTACTTGACACATTCCCAATAGGATAATTATGCATTAGAAAGATATCGGCAAATCGAAGAACAACCGAAGGATCTATCTTTGTTTCCTAGAAAAGGGTGTCACCAGATCCTTGTTTGAATTTCTTGTAGCAGAGCTAACACAAATTTATGTAGTAAAGTGATGAGTAAAGATCTCTTGAATGATCGCTGCGATTTCTGGTGCAAGTAAAGAAACTCCAGACATGGAGGAGCCGTTAGTTAAAAGTGATTTTGATCATTGAAAACCAATCCAGTAGTTAAATCTATTCTCTATCTGTAAAACTGATTAAGCAAATAGGCTTAGAGCTGATACAATGACAAGTTTAGAATGATAGAATCAAACTAAACTTCTCAGTGTGGAAACTTTTCGAAACTTCTGTTCTGCTTTGATTTCGTACTGACTTCATATAGTATGATTGTTCTTCTGGCCAATGTGAACAATACTAAAATTGGTAGCACATGCGTTAATTTCTTTTTGGTTGCTTTATGTTTTGTTGTAAGCTGATTATGTCTGCACTTTTCCATGAAACAGAGAGCAAGAAATACATGGAACAGTGGCTGTCCGCTCTTCAGAACTGCTGA

mRNA sequence

ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGCGTAGTGGGAAGCATAAAGAACCTCAAAGCTCTAATGGGGGTTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACAGATACTCTAAAATTTTCTTTAGTTAATGGGGCCAGCATATCATCCTCGTCTAGAAGGGTGAAACGGAAATGGCATAGTCGGGAAGAGAGGAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGGTGCATGTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCATGGACCTGGATTCCAGAGTGATGATGACTCGGATAACAGTTTTGCAGTGCTGGTTCCATGTTATGCACGCATTTACAATGATTTTGTGGATGAAACTAAGATCAGTGTCCTAAGTGCTGTTGGGAACATCAGCGACAGCTTTTCTACTGAGAGCAAGAAATACATGGAACAGTGGCTGTCCGCTCTTCAGAACTGCTGA

Coding sequence (CDS)

ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGCGTAGTGGGAAGCATAAAGAACCTCAAAGCTCTAATGGGGGTTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACAGATACTCTAAAATTTTCTTTAGTTAATGGGGCCAGCATATCATCCTCGTCTAGAAGGGTGAAACGGAAATGGCATAGTCGGGAAGAGAGGAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGGTGCATGTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCATGGACCTGGATTCCAGAGTGATGATGACTCGGATAACAGTTTTGCAGTGCTGGTTCCATGTTATGCACGCATTTACAATGATTTTGTGGATGAAACTAAGATCAGTGTCCTAAGTGCTGTTGGGAACATCAGCGACAGCTTTTCTACTGAGAGCAAGAAATACATGGAACAGTGGCTGTCCGCTCTTCAGAACTGCTGA

Protein sequence

MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGASISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC

Homology

[Close]

BLAST of Csor.00g294400 vs. NCBI nr
Match: KAG6598728.1 (hypothetical protein SDJN03_08506, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 348 bits (894), Expect = 3.84e-121
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGASISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGASISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGASISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 171
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 171

[Close]

BLAST of Csor.00g294400 vs. NCBI nr
Match: XP_022961803.1 (uncharacterized protein LOC111462457 isoform X2 [Cucurbita moschata] >KAG7029669.1 hypothetical protein SDJN02_08009, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347 bits (891), Expect = 1.10e-120
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGASISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGA+ISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 171
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 171

[Close]

BLAST of Csor.00g294400 vs. NCBI nr
Match: XP_022997281.1 (uncharacterized protein LOC111492231 isoform X2 [Cucurbita maxima])

HSP 1 Score: 346 bits (888), Expect = 3.16e-120
Identity = 169/171 (98.83%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGASISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGA+ISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 171
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLS+LQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSSLQNC 171

[Close]

BLAST of Csor.00g294400 vs. NCBI nr
Match: XP_023545352.1 (uncharacterized protein LOC111804795 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 343 bits (881), Expect = 3.69e-119
Identity = 167/171 (97.66%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGASISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGS+LNASLDTANRETDTLKFSLVNGA+ISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 171
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLS+LQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSSLQNC 171

[Close]

BLAST of Csor.00g294400 vs. NCBI nr
Match: XP_022961798.1 (uncharacterized protein LOC111462457 isoform X1 [Cucurbita moschata] >XP_022961799.1 uncharacterized protein LOC111462457 isoform X1 [Cucurbita moschata] >XP_022961802.1 uncharacterized protein LOC111462457 isoform X1 [Cucurbita moschata])

HSP 1 Score: 343 bits (879), Expect = 7.72e-119
Identity = 170/172 (98.84%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGASISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGA+ISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST-ESKKYMEQWLSALQNC 171
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST ESKKYMEQWLSALQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAESKKYMEQWLSALQNC 172

[Close]

BLAST of Csor.00g294400 vs. ExPASy TrEMBL
Match: A0A6J1HCV7 (uncharacterized protein LOC111462457 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462457 PE=4 SV=1)

HSP 1 Score: 347 bits (891), Expect = 5.34e-121
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGASISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGA+ISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 171
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 171

[Close]

BLAST of Csor.00g294400 vs. ExPASy TrEMBL
Match: A0A6J1K730 (uncharacterized protein LOC111492231 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492231 PE=4 SV=1)

HSP 1 Score: 346 bits (888), Expect = 1.53e-120
Identity = 169/171 (98.83%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGASISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGA+ISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 171
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLS+LQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSSLQNC 171

[Close]

BLAST of Csor.00g294400 vs. ExPASy TrEMBL
Match: A0A6J1HCV2 (uncharacterized protein LOC111462457 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462457 PE=4 SV=1)

HSP 1 Score: 343 bits (879), Expect = 3.74e-119
Identity = 170/172 (98.84%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGASISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGA+ISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST-ESKKYMEQWLSALQNC 171
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST ESKKYMEQWLSALQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAESKKYMEQWLSALQNC 172

[Close]

BLAST of Csor.00g294400 vs. ExPASy TrEMBL
Match: A0A6J1KDE3 (uncharacterized protein LOC111492231 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492231 PE=4 SV=1)

HSP 1 Score: 342 bits (876), Expect = 1.07e-118
Identity = 169/172 (98.26%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGASISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGA+ISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST-ESKKYMEQWLSALQNC 171
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST ESKKYMEQWLS+LQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAESKKYMEQWLSSLQNC 172

[Close]

BLAST of Csor.00g294400 vs. ExPASy TrEMBL
Match: A0A1S3BB05 (uncharacterized protein LOC103488121 OS=Cucumis melo OX=3656 GN=LOC103488121 PE=4 SV=1)

HSP 1 Score: 328 bits (841), Expect = 2.25e-113
Identity = 157/171 (91.81%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGASISSSSRRV 60
           MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGA+ISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 171
           AVLVPCY RIYNDFVDETK S+LSA+GNI+DSFS ESKKYMEQWLS+LQNC
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAIGNINDSFSAESKKYMEQWLSSLQNC 171

[Close]

BLAST of Csor.00g294400 vs. TAIR 10
Match: AT4G38060.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-15
Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 89  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYARIYNDFVDETKIS 148
           SGSES      D  +WS+GW+EPHGP FQSDD+ +D  F VLVPCY  +     +     
Sbjct: 48  SGSESVDVVAGDGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCYRAVVEGSSNNNN-Q 107

Query: 149 VLSAVGNISDSFSTESKKYMEQWLSALQ 170
           +LSAV N+ +    + K YMEQWLS+LQ
Sbjct: 108 LLSAVKNLPNGLPPDGKNYMEQWLSSLQ 134

[Close]

BLAST of Csor.00g294400 vs. TAIR 10
Match: AT5G65480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-15
Identity = 60/173 (34.68%), Postives = 86/173 (49.71%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSG-----KHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGASISS 60
           M+V+FP+L  WL  G     + K+     G S+L+ SL    ++T T K       S SS
Sbjct: 1   MAVSFPRLPRWLCGGSNTKDREKKESIPKGSSSLSPSL----KKTTTSK-----TGSSSS 60

Query: 61  SSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDD 120
           S ++ KR W  R       E D +      G +   E DD +WSIGW EPHGPGF+++DD
Sbjct: 61  SVKKTKRGWIGRGGSGSGGEEDKI------GNVVFPEPDDPEWSIGWVEPHGPGFKAEDD 120

Query: 121 SDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSAL 169
               F VLVP Y ++ +   ++        + N   S +    K MEQWLS++
Sbjct: 121 DCGGFVVLVPLYKKVMDGSGNQ--------IPNGFFSPAAPDGKNMEQWLSSM 150

[Close]

BLAST of Csor.00g294400 vs. TAIR 10
Match: AT4G38060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-09
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 89  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYARIYNDFVDETKIS 148
           SGSES      D  +WS+GW+EPHGP FQSDD+ +D  F VLVPCY  +     +     
Sbjct: 48  SGSESVDVVAGDGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCYRAVVEGSSNNNN-Q 107

Query: 149 VLSAVGNI 150
           +LSAV N+
Sbjct: 108 LLSAVKNL 114

The following BLAST results are available for this feature:

BLAST of Csor.00g294400 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g294400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598728.1	3.84e-121	100.00	hypothetical protein SDJN03_08506, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022961803.1	1.10e-120	99.42	uncharacterized protein LOC111462457 isoform X2 [Cucurbita moschata] >KAG7029669...	[more]
XP_022997281.1	3.16e-120	98.83	uncharacterized protein LOC111492231 isoform X2 [Cucurbita maxima]	[more]
XP_023545352.1	3.69e-119	97.66	uncharacterized protein LOC111804795 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022961798.1	7.72e-119	98.84	uncharacterized protein LOC111462457 isoform X1 [Cucurbita moschata] >XP_0229617...	[more]

BLAST of Csor.00g294400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HCV7	5.34e-121	99.42	uncharacterized protein LOC111462457 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1K730	1.53e-120	98.83	uncharacterized protein LOC111492231 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HCV2	3.74e-119	98.84	uncharacterized protein LOC111462457 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KDE3	1.07e-118	98.26	uncharacterized protein LOC111492231 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3BB05	2.25e-113	91.81	uncharacterized protein LOC103488121 OS=Cucumis melo OX=3656 GN=LOC103488121 PE=...	[more]

BLAST of Csor.00g294400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38060.2	1.5e-15	48.86	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G65480.1	3.2e-15	34.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G38060.1	2.7e-09	48.53	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..114
None	No IPR available	PANTHER	PTHR34464	OS09G0376300 PROTEIN	coord: 1..170
None	No IPR available	PANTHER	PTHR34464:SF5	SUBFAMILY NOT NAMED	coord: 1..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g294400.m01	Csor.00g294400.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
molecular_function	GO:0008168	methyltransferase activity