Csor.00g294380 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g294380
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	double-stranded RNA-binding protein 1-like
Location	Csor_Chr05: 2781888 .. 2784899 (+)
RNA-Seq Expression	Csor.00g294380
Synteny	Csor.00g294380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGCCAAGGACAGCTTTCAAGGTATTCCATTTCTTTCCTTTTACTTTCGAGCACCTACTTTCGGAGTCGTTTCTATTATTATCTCTGGTGTCTGGATTGCTGTATTGATATTGTTTTAGTTGGATTTCTCAAGGAACTTGGAATTTTTTTACATTATTTTCCGAGAATTTTGCTAATTTTACTGGCCGGAATTGGGCGGGATAGAAGAGTATTCTGAGTTAACAAATTGTCCGCGTTGAGAATTGAAGTTGTTAATTCACCTGTCCCAATTTTTCTCTGTAAAGAATGTGTTCTAAGTTATTTTAATTTATTCCTTTGTTTGAAGTGTTTGATGTTATGGTGCCAATGTTTTTCATTCAATTTATTAGATATTATATATATTTGTGAATGATGGGTTATTGTTATTAATTTTGTTACTATTAGCTTTGGACAAGTATGTTGTTGGTGCTTATTTTTCTTATTCTTGGATGCATATCAGGTGTTTCAAATTGCTATGTTTTCAAAAGTCGACTGCAGGAATATGCACAAAAGGTGGGACTTCCTACACCTGTATATGAGACTATCAAAGAAGGGCCTTCCCATGAGCCAACATTTTATTCTACGGTGATCGTTAAAGATGTTAGATATGATTCACTTCCTGGATTCTCTAATCGCAAGGCAGCAGAGCAGTCAGCTGCTGAAGTAGCTCTGATGGAGCTGTCGAAATCTAATGATCTTAATCCACATGTCTCTCTACCTGTGGTAAGATTTCATATACCATTTATAGTTTTTTGTGGACCTCTCAATAACCAAATGTCAGAGTCCATTATTTGTTGGATGATTATTTGAAGTTAGACTGACATAAATTGAGGGAAAGTTTGGTATTTGCATTTACTAAAAGCATTTCAGTATCCAACCTATTAGAGTTCTTCTAAGTCATGGATTCAAGTCATGAGGACCTAGATTGAACTTCTGTGCACAATCCTTCTCTACTCCTCTCACCTGAACTATCCATAACAACCTTCTCGTTTAACTATGCCTGATTGTTCATTCCTATGAAATTCTTATTTAGGGTGCTATATGGTATGTAACAGACCATGCTCACCGCTAGCAGATATTGAGGGGAAACCCAAAAGGGAACGTCCAAAGAGGACAATATCCGCTAGCGGTGGGATTTGGCTATTATATGGTAAGTCTTTTTATAGCCCTCTTTTGGCTTAATATTACACATTTTCTCAATCTGCAACCACCGAGGAACTTAAACATAAGCTAGGAAAGACCTTCTCAACTCTCACTAACAGTTGCTTTGGGGTAGGAAAGATCCAACAGGCTTGACCAATGTCATAATTGGAGGAAGCTCCAACTACCCATAACTTGTGCTTTTGATTCGACCATCACTTACCTAGAATACCACACATAAACTTATAGAAAGAAACCAAAGGTTTTTTTAGGACAGAAGTGTTGGGTTGGGAAGAAAGTAGGCCTAACAAAATTTCATGAATCTTCCCAGAGTGCTCTATCTAACTCATTTGTAATTAATTCTAATTGCCTTTTAATGTAAATAAATACTGATCGAAAGGATAAATACGTTTTTTTTTAACTCTTCAATGCATCAATGAGAAATGTGGTTCTTAAAAAAAAGAAAAAAAAGAAGAATAAGAAAAAGGGAAAGGAAAAGGGTTCGTTTTATTCTTAACTTCATTGAGGAAAAAAAAGTTATTTAAGAGGTATAAATCGACTATGAAGTGTGTCTTCTAATGAAATAATAGAGTACAGGGGGCTTAACATTGACAAATAAGTGATGTTGGGACAATATAAATCGATTATGTACAGTTCATTCTTTGAATCATATACTAGAGGACTTACCAGATCTATTATGCAAACAGTCATCTTCTACGCTGAAAATTGTTGTGGGAATTTGGCCGGTCTTTTGCTGTATCCTCTTATTATCAGGTTACATAGTAAATAAAGCACCAGAGTTGTATCCTTTTCGTTGGAGTCTCATTTGGCAGAAGTACTTCCGCTTGTTTCAATGATAATACATTATCCCAAGCAGTTTGTTTTGAATAAATAAGAAAGCTTCAAATTTCTGTATGTTATCTAAATTCAAACTCTCACTAAATAAAGAATGGGCCTAAAACTATTGGGCTCTTACTAAACAGATTGTACTTTCTGCTTTTTTTTAGCGGTGGTGGAAGTAAAAAGAAGAAATTATGCTTTCTGTGGCAGTGTATTTTCCGCATCTTTTCTTTGACAACCTTACCTTTTTCCAGCATGAAACAGGACTATGCAAAAATCTGCTTCAGGAATATGCACAGAAGATGAACTTTGCAATCCCACTATATCAATGCAAAAAAGATGATAGTTCGGGCAGAACACCCCTTTTCTCGTGTACAGTCGAGATTGGAGGGATCCGCTACATTGGTGCTGCAGCAAAAACAAAGAAAGAAGCAGAAATTAAAGCTGCAAGAACTGCTTTGTTAGCTATCCAGTCTTGCCCGACGTCGCTGCCTGAGAATTCTGTCAATCAAGTTCAGCTCACTGTGATCCCGTGCAAGAGGAAAGAAGCAGCAGATTGCTCAGTTAAACCGAAAACTGCTGGAGCACCCCGAATAAAGAAAGGCCGATTCAAGAAGGTGGCGTCAAAGAAAAAAGGCCACAGAAATGGACTGCCCAATTTGGAGTTTAACTTTGATAGATCATCCTTCGAACCTCTTGAAACTACTGGGGTCGACCCGGTGCCAGGTTTAGGGGAATCTGTTGAATTAGCCAAAGATACCGTGCTGAATTCCGAGTATAAAACGACAGACCTAAGCTCAAGTGGCAATGATGTAGTGGTCTCTAACATCCAAAGTGACACGTCTCAGCTCCCAAATGGTAATTTCGGAAATGATCGTTTGGATACTTTCAGTTCCAATCAAATAAACTGTTCAACTTCTGATGTTATGAGTTTTCCTCTCCCCGACGTTCAAGCTACTTGTGGTGAAGTGGCGAATGTGGCCACTGGAGTGACAGGGGAGCTTCACTGA

mRNA sequence

ATGCCGGCCAAGGACAGCTTTCAAGGTGTTTCAAATTGCTATGTTTTCAAAAGTCGACTGCAGGAATATGCACAAAAGGTGGGACTTCCTACACCTGTATATGAGACTATCAAAGAAGGGCCTTCCCATGAGCCAACATTTTATTCTACGGTGATCGTTAAAGATGTTAGATATGATTCACTTCCTGGATTCTCTAATCGCAAGGCAGCAGAGCAGTCAGCTGCTGAAGTAGCTCTGATGGAGCTGTCGAAATCTAATGATCTTAATCCACATGTCTCTCTACCTGTGCATGAAACAGGACTATGCAAAAATCTGCTTCAGGAATATGCACAGAAGATGAACTTTGCAATCCCACTATATCAATGCAAAAAAGATGATAGTTCGGGCAGAACACCCCTTTTCTCGTGTACAGTCGAGATTGGAGGGATCCGCTACATTGGTGCTGCAGCAAAAACAAAGAAAGAAGCAGAAATTAAAGCTGCAAGAACTGCTTTGTTAGCTATCCAGTCTTGCCCGACGTCGCTGCCTGAGAATTCTGTCAATCAAGTTCAGCTCACTGTGATCCCGTGCAAGAGGAAAGAAGCAGCAGATTGCTCAGTTAAACCGAAAACTGCTGGAGCACCCCGAATAAAGAAAGGCCGATTCAAGAAGGTGGCGTCAAAGAAAAAAGGCCACAGAAATGGACTGCCCAATTTGGAGTTTAACTTTGATAGATCATCCTTCGAACCTCTTGAAACTACTGGGGTCGACCCGGTGCCAGGTTTAGGGGAATCTGTTGAATTAGCCAAAGATACCGTGCTGAATTCCGAGTATAAAACGACAGACCTAAGCTCAAGTGGCAATGATGTAGTGGTCTCTAACATCCAAAGTGACACGTCTCAGCTCCCAAATGGTAATTTCGGAAATGATCGTTTGGATACTTTCAGTTCCAATCAAATAAACTGTTCAACTTCTGATGTTATGAGTTTTCCTCTCCCCGACGTTCAAGCTACTTGTGGTGAAGTGGCGAATGTGGCCACTGGAGTGACAGGGGAGCTTCACTGA

Coding sequence (CDS)

ATGCCGGCCAAGGACAGCTTTCAAGGTGTTTCAAATTGCTATGTTTTCAAAAGTCGACTGCAGGAATATGCACAAAAGGTGGGACTTCCTACACCTGTATATGAGACTATCAAAGAAGGGCCTTCCCATGAGCCAACATTTTATTCTACGGTGATCGTTAAAGATGTTAGATATGATTCACTTCCTGGATTCTCTAATCGCAAGGCAGCAGAGCAGTCAGCTGCTGAAGTAGCTCTGATGGAGCTGTCGAAATCTAATGATCTTAATCCACATGTCTCTCTACCTGTGCATGAAACAGGACTATGCAAAAATCTGCTTCAGGAATATGCACAGAAGATGAACTTTGCAATCCCACTATATCAATGCAAAAAAGATGATAGTTCGGGCAGAACACCCCTTTTCTCGTGTACAGTCGAGATTGGAGGGATCCGCTACATTGGTGCTGCAGCAAAAACAAAGAAAGAAGCAGAAATTAAAGCTGCAAGAACTGCTTTGTTAGCTATCCAGTCTTGCCCGACGTCGCTGCCTGAGAATTCTGTCAATCAAGTTCAGCTCACTGTGATCCCGTGCAAGAGGAAAGAAGCAGCAGATTGCTCAGTTAAACCGAAAACTGCTGGAGCACCCCGAATAAAGAAAGGCCGATTCAAGAAGGTGGCGTCAAAGAAAAAAGGCCACAGAAATGGACTGCCCAATTTGGAGTTTAACTTTGATAGATCATCCTTCGAACCTCTTGAAACTACTGGGGTCGACCCGGTGCCAGGTTTAGGGGAATCTGTTGAATTAGCCAAAGATACCGTGCTGAATTCCGAGTATAAAACGACAGACCTAAGCTCAAGTGGCAATGATGTAGTGGTCTCTAACATCCAAAGTGACACGTCTCAGCTCCCAAATGGTAATTTCGGAAATGATCGTTTGGATACTTTCAGTTCCAATCAAATAAACTGTTCAACTTCTGATGTTATGAGTTTTCCTCTCCCCGACGTTCAAGCTACTTGTGGTGAAGTGGCGAATGTGGCCACTGGAGTGACAGGGGAGCTTCACTGA

Protein sequence

MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSVNQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSSFEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVVVSNIQSDTSQLPNGNFGNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH

Homology

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BLAST of Csor.00g294380 vs. ExPASy Swiss-Prot
Match: O04492 (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 4.1e-70
Identity = 143/224 (63.84%), Postives = 167/224 (74.55%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60
           M + D   GVSNCYVFKSRLQEYAQK  LPTPVYE +KEGPSH+  F STVI+  VRY+S
Sbjct: 1   MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNS 60

Query: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGF NRKAAEQSAAEVAL EL+KS++L+  VS PVHETGLCKNLLQEYAQKMN+AIPLY
Sbjct: 61  LPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLY 120

Query: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180
           QC+K ++ GR   F+CTVEIGGI+Y GAA +TKK+AEI A RTALLAIQS       N  
Sbjct: 121 QCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS---DTKNNLA 180

Query: 181 N-QVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKK 224
           N   QLTV+PC++K         +T    + +K +FKK A K K
Sbjct: 181 NYNTQLTVLPCEKKTIQAAIPLKETVKTLKARKAQFKKKAQKGK 221

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BLAST of Csor.00g294380 vs. ExPASy Swiss-Prot
Match: Q0IV63 (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB7 PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 5.0e-60
Identity = 136/215 (63.26%), Postives = 154/215 (71.63%), Query Frame = 0


Query: 10  VSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKA 69
           V NCYVFKSRLQEYAQK GL TP Y T KEGPSHEP F STV++ +  YDSLPGF NRKA
Sbjct: 28  VENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87

Query: 70  AEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSG 129
           AEQSAAEVALME+ KS   N ++   V ETGLCKNLLQEYAQKMN+AIP Y C K  +SG
Sbjct: 88  AEQSAAEVALMEIVKSIPANANIP-AVQETGLCKNLLQEYAQKMNYAIPSYICTK-SASG 147

Query: 130 RTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSVN-QVQLTVI 189
             P F CTVEIGGI+YIGAAA+TKK+AEIKAARTALLAIQ       E S N   +  V+
Sbjct: 148 LAP-FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ----GQSEGSANGATKYIVV 207

Query: 190 PCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKK 224
           P KR       +  +T    +IKKG FKK  +K+K
Sbjct: 208 PGKRVGKEVEKMPIETPKPLKIKKGGFKKKWNKRK 235

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BLAST of Csor.00g294380 vs. ExPASy Swiss-Prot
Match: Q0IQN6 (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB8 PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 8.6e-60
Identity = 132/215 (61.40%), Postives = 153/215 (71.16%), Query Frame = 0


Query: 10  VSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKA 69
           V NCYVFKSRLQEYAQK GL TP Y T KEGPSHEP F STV++ +  YDSLPGF NRKA
Sbjct: 28  VENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87

Query: 70  AEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSG 129
           AEQSAAEVALME+ KS   N ++   V ETGLCKNLLQEYAQKMN+AIP Y C K  +SG
Sbjct: 88  AEQSAAEVALMEIVKSIPANANIP-AVQETGLCKNLLQEYAQKMNYAIPSYICTK-SASG 147

Query: 130 RTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSVNQVQLTVIP 189
             P F CTVEIGGI+YIGAAA+TKK+AEIKAARTALLAIQ       E S N     ++ 
Sbjct: 148 LAP-FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ----GQSEGSANGATKYIVV 207

Query: 190 CKRKEAADCSVKPKTAGAP-RIKKGRFKKVASKKK 224
             ++   +   +P     P ++KKG FKK  +K+K
Sbjct: 208 PGKRVGKEVEKRPIETPKPLKVKKGGFKKKWNKRK 235

[Close]

BLAST of Csor.00g294380 vs. ExPASy Swiss-Prot
Match: Q0DJA3 (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB3 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 7.2e-59
Identity = 132/215 (61.40%), Postives = 152/215 (70.70%), Query Frame = 0


Query: 10  VSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKA 69
           V NCYVFKSRLQEYAQK GL TP Y T KEGPSHEP F STV++ +  Y SLPGFSNRKA
Sbjct: 30  VENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKA 89

Query: 70  AEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSG 129
           AEQSAAEVALME+ KS   N ++   V ETGLCKNLLQEYAQKMN+AIP Y C K  +SG
Sbjct: 90  AEQSAAEVALMEIVKSIPANANIP-AVQETGLCKNLLQEYAQKMNYAIPSYICTK-PASG 149

Query: 130 RTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSVNQVQLTVIP 189
             P F CTVEIGGI+YIGAAA+TKK+AEIKAARTALLAIQ       E S N     ++ 
Sbjct: 150 LAP-FLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ----GQSEGSANGATKYIVV 209

Query: 190 CKRKEAADCSVKPKTAGAP-RIKKGRFKKVASKKK 224
             ++   +   +P     P + KKG FKK  +K+K
Sbjct: 210 PGKRVGKEVEKRPIETPKPLKAKKGGFKKKWNKRK 237

[Close]

BLAST of Csor.00g294380 vs. ExPASy Swiss-Prot
Match: Q0DKP4 (Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB2 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.9e-23
Identity = 62/158 (39.24%), Postives = 90/158 (56.96%), Query Frame = 0


Query: 15  VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKAAEQSA 74
           ++K++LQE AQ+     P Y  I+EGP H P F +TV      ++S    S  + AE +A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60

Query: 75  AEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSGRTPLF 134
           AEVAL ELSK    +   +  + ETG+ KNLLQE A +    +P+Y   +    G TP+F
Sbjct: 61  AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIR-SGPGHTPVF 120

Query: 135 SCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCP 173
           +CTVE+ G+ + G   KTKK+A+  AA  A   ++  P
Sbjct: 121 TCTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLP 157

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BLAST of Csor.00g294380 vs. NCBI nr
Match: KAG6598726.1 (Double-stranded RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 684 bits (1766), Expect = 3.47e-248
Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60
           MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS
Sbjct: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180
           QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV
Sbjct: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180

Query: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSS 240
           NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSS
Sbjct: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSS 240

Query: 241 FEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVVVSNIQSDTSQLPNGNF 300
           FEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVVVSNIQSDTSQLPNGNF
Sbjct: 241 FEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVVVSNIQSDTSQLPNGNF 300

Query: 301 GNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH 347
           GNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH
Sbjct: 301 GNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH 347

[Close]

BLAST of Csor.00g294380 vs. NCBI nr
Match: KAG7029667.1 (Double-stranded RNA-binding protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 681 bits (1758), Expect = 5.75e-247
Identity = 345/347 (99.42%), Postives = 346/347 (99.71%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60
           MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS
Sbjct: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180
           QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV
Sbjct: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180

Query: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSS 240
           NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSS
Sbjct: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSS 240

Query: 241 FEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVVVSNIQSDTSQLPNGNF 300
           FEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDV+VSNIQSDT QLPNGNF
Sbjct: 241 FEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVLVSNIQSDTPQLPNGNF 300

Query: 301 GNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH 347
           GNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH
Sbjct: 301 GNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH 347

[Close]

BLAST of Csor.00g294380 vs. NCBI nr
Match: XP_022962385.1 (double-stranded RNA-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 677 bits (1748), Expect = 1.92e-245
Identity = 343/347 (98.85%), Postives = 344/347 (99.14%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60
           MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS
Sbjct: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180
           QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV
Sbjct: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180

Query: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSS 240
           NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSS
Sbjct: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSS 240

Query: 241 FEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVVVSNIQSDTSQLPNGNF 300
           FEPLET GVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDV+VSNIQSDT QLPNGNF
Sbjct: 241 FEPLETNGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVLVSNIQSDTPQLPNGNF 300

Query: 301 GNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH 347
           GNDRLD FSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH
Sbjct: 301 GNDRLDAFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH 347

[Close]

BLAST of Csor.00g294380 vs. NCBI nr
Match: XP_023545931.1 (double-stranded RNA-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 676 bits (1743), Expect = 1.11e-244
Identity = 342/347 (98.56%), Postives = 344/347 (99.14%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60
           MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS
Sbjct: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180
           QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV
Sbjct: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180

Query: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSS 240
           NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKV SKKKGHRNGLPNLEF+FDRSS
Sbjct: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVVSKKKGHRNGLPNLEFSFDRSS 240

Query: 241 FEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVVVSNIQSDTSQLPNGNF 300
           FEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDV+VSNIQSDT  LPNGNF
Sbjct: 241 FEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVLVSNIQSDTPPLPNGNF 300

Query: 301 GNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH 347
           GNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH
Sbjct: 301 GNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH 347

[Close]

BLAST of Csor.00g294380 vs. NCBI nr
Match: XP_022997205.1 (double-stranded RNA-binding protein 1-like [Cucurbita maxima])

HSP 1 Score: 650 bits (1677), Expect = 1.32e-234
Identity = 334/348 (95.98%), Postives = 338/348 (97.13%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60
           MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS
Sbjct: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVS PVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180
           QCKKDDSSGRT LFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV
Sbjct: 121 QCKKDDSSGRTSLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180

Query: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSS 240
           NQVQLTVIPCKRKEAAD SVKPKT GAPRIKKGRFKKV SKKK +R+GLPNLEFNFDRSS
Sbjct: 181 NQVQLTVIPCKRKEAADFSVKPKTTGAPRIKKGRFKKVVSKKKDNRSGLPNLEFNFDRSS 240

Query: 241 -FEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVVVSNIQSDTSQLPNGN 300
            FEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDV+VSNIQSDT QLPNGN
Sbjct: 241 SFEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVLVSNIQSDTPQLPNGN 300

Query: 301 FGNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH 347
            GNDRLDTFSSNQINCSTSDVMSFPL DVQATCGEVANVATG+TGELH
Sbjct: 301 IGNDRLDTFSSNQINCSTSDVMSFPLSDVQATCGEVANVATGMTGELH 348

[Close]

BLAST of Csor.00g294380 vs. ExPASy TrEMBL
Match: A0A6J1HEW7 (double-stranded RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111462846 PE=4 SV=1)

HSP 1 Score: 677 bits (1748), Expect = 9.31e-246
Identity = 343/347 (98.85%), Postives = 344/347 (99.14%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60
           MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS
Sbjct: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180
           QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV
Sbjct: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180

Query: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSS 240
           NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSS
Sbjct: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSS 240

Query: 241 FEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVVVSNIQSDTSQLPNGNF 300
           FEPLET GVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDV+VSNIQSDT QLPNGNF
Sbjct: 241 FEPLETNGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVLVSNIQSDTPQLPNGNF 300

Query: 301 GNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH 347
           GNDRLD FSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH
Sbjct: 301 GNDRLDAFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH 347

[Close]

BLAST of Csor.00g294380 vs. ExPASy TrEMBL
Match: A0A6J1K8Y3 (double-stranded RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111492178 PE=4 SV=1)

HSP 1 Score: 650 bits (1677), Expect = 6.41e-235
Identity = 334/348 (95.98%), Postives = 338/348 (97.13%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60
           MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS
Sbjct: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVS PVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180
           QCKKDDSSGRT LFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV
Sbjct: 121 QCKKDDSSGRTSLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180

Query: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFNFDRSS 240
           NQVQLTVIPCKRKEAAD SVKPKT GAPRIKKGRFKKV SKKK +R+GLPNLEFNFDRSS
Sbjct: 181 NQVQLTVIPCKRKEAADFSVKPKTTGAPRIKKGRFKKVVSKKKDNRSGLPNLEFNFDRSS 240

Query: 241 -FEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVVVSNIQSDTSQLPNGN 300
            FEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDV+VSNIQSDT QLPNGN
Sbjct: 241 SFEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVLVSNIQSDTPQLPNGN 300

Query: 301 FGNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH 347
            GNDRLDTFSSNQINCSTSDVMSFPL DVQATCGEVANVATG+TGELH
Sbjct: 301 IGNDRLDTFSSNQINCSTSDVMSFPLSDVQATCGEVANVATGMTGELH 348

[Close]

BLAST of Csor.00g294380 vs. ExPASy TrEMBL
Match: A0A5A7VI00 (Double-stranded RNA-binding protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004330 PE=4 SV=1)

HSP 1 Score: 520 bits (1339), Expect = 1.94e-183
Identity = 274/349 (78.51%), Postives = 294/349 (84.24%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60
           MPAKD+FQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTF+STVIV DVRYDS
Sbjct: 1   MPAKDNFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALMELSKS+DLNPHVS PVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180
           QC+KDD  GR  LFSCTVEIGGIRYIGA AKTKKEAEIKAARTALLAIQSCP SL   SV
Sbjct: 121 QCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSAKSV 180

Query: 181 NQVQLTVIP-CKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFN-FDR 240
           NQVQLTVIP CKRKEAADCSV PK+  APR KKGRFK+   +K+G RNGL NL+FN  DR
Sbjct: 181 NQVQLTVIPSCKRKEAADCSVTPKSTAAPRAKKGRFKRGVLRKRGFRNGLVNLDFNNIDR 240

Query: 241 SSFEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVVVSNIQSDTSQLPNG 300
           S+ EP  T  V  +PG    V+LAKDT+ NSE +TTDLSSS ND +VSN+QSD     N 
Sbjct: 241 SALEPFTTEAVQ-LPGYAGPVDLAKDTLPNSESRTTDLSSSNNDFLVSNVQSDMPPHVNS 300

Query: 301 NFGNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH 347
           NFGN    T +SNQ+NC+TS+VMSFPL DVQ TC EV NVA GVTGEL 
Sbjct: 301 NFGNACSGTLNSNQVNCATSNVMSFPLTDVQPTCSEVGNVAAGVTGELQ 348

[Close]

BLAST of Csor.00g294380 vs. ExPASy TrEMBL
Match: A0A0A0LRU8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370450 PE=4 SV=1)

HSP 1 Score: 518 bits (1335), Expect = 8.79e-183
Identity = 277/352 (78.69%), Postives = 299/352 (84.94%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60
           MPAKD+FQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTF+STVIV DVRYDS
Sbjct: 1   MPAKDNFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALMELSKS+DLNPHVS PVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180
           QC+KDD  GR  LFSCTVEIGGIRYIGA AKTKKEAEIKAARTALLAIQSCP SL E SV
Sbjct: 121 QCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSV 180

Query: 181 NQVQLTVIP-CKRKEAADCSVKPKTAGAPRIKKGRFKKVAS---KKKGHRNGLPNLEF-N 240
           NQVQLTVIP CKRKEAADCSVKPK+  +PR KKGRFK+      + +   NGL NL+F N
Sbjct: 181 NQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKRFKRGVLRNRDFINGLVNLDFDN 240

Query: 241 FDRSSFEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVVVSNIQSDTSQL 300
            DRS+ EP  TTGV  +PG    V+LAKDT+LNSE +TTDLSS+ NDV+VSN+QSD   L
Sbjct: 241 TDRSTLEPF-TTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLL 300

Query: 301 PNGNFGNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH 347
            NGN GN    TF+SNQ+NC+TS+VMS PL DVQ TC EVANVA GVTGEL 
Sbjct: 301 LNGNSGNGCSGTFNSNQVNCATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ 351

[Close]

BLAST of Csor.00g294380 vs. ExPASy TrEMBL
Match: A0A1S3BBH0 (double-stranded RNA-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488118 PE=4 SV=1)

HSP 1 Score: 514 bits (1325), Expect = 2.53e-181
Identity = 272/349 (77.94%), Postives = 295/349 (84.53%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60
           MPAKD+FQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTF+STVIV DVRY+S
Sbjct: 1   MPAKDNFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYNS 60

Query: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALMELSKS+DLNPHVS PVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180
           QC+KDD  GR  LFSCTVEIGGIRYIGA AKTKKEAEIKAARTALLAIQSCP SL   S+
Sbjct: 121 QCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSAKSI 180

Query: 181 NQVQLTVIP-CKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNGLPNLEFN-FDR 240
           N +QLTVIP CKRKEAADCSV PK+  APR KKGRFK+  S+K+G RNGL NL+FN  DR
Sbjct: 181 N-LQLTVIPSCKRKEAADCSVTPKSTAAPRAKKGRFKRGVSRKRGFRNGLVNLDFNNIDR 240

Query: 241 SSFEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVVVSNIQSDTSQLPNG 300
           S+ EP  T  V  +PG    V+LAKDT+ NSE +TTDLSSS NDV+VSN+QSD     N 
Sbjct: 241 SALEPFTTEAVQ-LPGYAGPVDLAKDTLPNSESRTTDLSSSNNDVLVSNVQSDMPPHVNS 300

Query: 301 NFGNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGVTGELH 347
           NFGN    T +SNQ+NC+TS+VMSFPL DVQ TC EV NVA GVTGEL 
Sbjct: 301 NFGNGCSGTLNSNQVNCATSNVMSFPLTDVQPTCSEVGNVAAGVTGELQ 347

[Close]

BLAST of Csor.00g294380 vs. TAIR 10
Match: AT1G09700.1 (dsRNA-binding domain-like superfamily protein )

HSP 1 Score: 266.5 bits (680), Expect = 2.9e-71
Identity = 143/224 (63.84%), Postives = 167/224 (74.55%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60
           M + D   GVSNCYVFKSRLQEYAQK  LPTPVYE +KEGPSH+  F STVI+  VRY+S
Sbjct: 1   MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNS 60

Query: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGF NRKAAEQSAAEVAL EL+KS++L+  VS PVHETGLCKNLLQEYAQKMN+AIPLY
Sbjct: 61  LPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLY 120

Query: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180
           QC+K ++ GR   F+CTVEIGGI+Y GAA +TKK+AEI A RTALLAIQS       N  
Sbjct: 121 QCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS---DTKNNLA 180

Query: 181 N-QVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKK 224
           N   QLTV+PC++K         +T    + +K +FKK A K K
Sbjct: 181 NYNTQLTVLPCEKKTIQAAIPLKETVKTLKARKAQFKKKAQKGK 221

[Close]

BLAST of Csor.00g294380 vs. TAIR 10
Match: AT3G26932.1 (dsRNA-binding protein 3 )

HSP 1 Score: 105.5 bits (262), Expect = 8.6e-23
Identity = 61/158 (38.61%), Postives = 87/158 (55.06%), Query Frame = 0


Query: 15  VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKAAEQSA 74
           ++K++LQE AQ+     P Y   +EGP H P F ++V      ++S    S  + AE SA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 75  AEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSGRTPLF 134
           AEVAL  LS         +  + ETG+ KNLLQE A +    +P+Y   +    G  P F
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVR-SGPGHIPTF 120

Query: 135 SCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCP 173
           SCTVE+ G+ + G +AKTKK+AE  AA  A  +++  P
Sbjct: 121 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMP 157

[Close]

BLAST of Csor.00g294380 vs. TAIR 10
Match: AT3G26932.2 (dsRNA-binding protein 3 )

HSP 1 Score: 105.5 bits (262), Expect = 8.6e-23
Identity = 61/158 (38.61%), Postives = 87/158 (55.06%), Query Frame = 0


Query: 15  VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKAAEQSA 74
           ++K++LQE AQ+     P Y   +EGP H P F ++V      ++S    S  + AE SA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 75  AEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSGRTPLF 134
           AEVAL  LS         +  + ETG+ KNLLQE A +    +P+Y   +    G  P F
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVR-SGPGHIPTF 120

Query: 135 SCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCP 173
           SCTVE+ G+ + G +AKTKK+AE  AA  A  +++  P
Sbjct: 121 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMP 157

[Close]

BLAST of Csor.00g294380 vs. TAIR 10
Match: AT2G28380.1 (dsRNA-binding protein 2 )

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-21
Identity = 65/179 (36.31%), Postives = 100/179 (55.87%), Query Frame = 0


Query: 15  VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKAAEQSA 74
           ++K++LQE AQ+     P Y  I+EGP H P F +TV      ++S    S  + AE SA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 75  AEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSGRTPLF 134
           AEVAL  LS     +   +  + ETG+ KNLLQE AQ++   +P Y   +    G  P+F
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFR-SGLGHQPVF 120

Query: 135 SCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAI----QSCPTSLPE-NSVNQVQLTVI 189
           + TVE+ GI + G  AK KK+AE  AA  A  ++    +   +S+PE  ++++++  +I
Sbjct: 121 TGTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVII 178

[Close]

BLAST of Csor.00g294380 vs. TAIR 10
Match: AT5G41070.1 (dsRNA-binding protein 5 )

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-20
Identity = 59/150 (39.33%), Postives = 84/150 (56.00%), Query Frame = 0


Query: 15  VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKAAEQSA 74
           ++K++LQE AQ+     P Y  I+EGP H P F ++V      ++S    S  + AE +A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 75  AEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSGRTPLF 134
           AEV+L  LS         +  + ETG+ KNLLQE A +    +P+Y   +  S    P F
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSC-HFPGF 120

Query: 135 SCTVEIGGIRYIGAAAKTKKEAEIKAARTA 165
           SCTVE+ G+ + G +AKTKK+AE  AA  A
Sbjct: 121 SCTVELAGMTFTGESAKTKKQAEKNAAIAA 149

The following BLAST results are available for this feature:

BLAST of Csor.00g294380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04492	4.1e-70	63.84	Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE...	[more]
Q0IV63	5.0e-60	63.26	Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q0IQN6	8.6e-60	61.40	Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q0DJA3	7.2e-59	61.40	Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q0DKP4	4.9e-23	39.24	Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of Csor.00g294380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598726.1	3.47e-248	100.00	Double-stranded RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7029667.1	5.75e-247	99.42	Double-stranded RNA-binding protein 1 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022962385.1	1.92e-245	98.85	double-stranded RNA-binding protein 1-like [Cucurbita moschata]	[more]
XP_023545931.1	1.11e-244	98.56	double-stranded RNA-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997205.1	1.32e-234	95.98	double-stranded RNA-binding protein 1-like [Cucurbita maxima]	[more]

BLAST of Csor.00g294380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEW7	9.31e-246	98.85	double-stranded RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1K8Y3	6.41e-235	95.98	double-stranded RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5A7VI00	1.94e-183	78.51	Double-stranded RNA-binding protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0LRU8	8.79e-183	78.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370450 PE=4 SV=1	[more]
A0A1S3BBH0	2.53e-181	77.94	double-stranded RNA-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Csor.00g294380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09700.1	2.9e-71	63.84	dsRNA-binding domain-like superfamily protein	[more]
AT3G26932.1	8.6e-23	38.61	dsRNA-binding protein 3	[more]
AT3G26932.2	8.6e-23	38.61	dsRNA-binding protein 3	[more]
AT2G28380.1	1.2e-21	36.31	dsRNA-binding protein 2	[more]
AT5G41070.1	1.8e-20	39.33	dsRNA-binding protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 102..169 e-value: 9.6E-16 score: 68.3 coord: 16..83 e-value: 7.8E-20 score: 81.9
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 17..81 e-value: 2.4E-14 score: 53.8 coord: 103..166 e-value: 5.1E-15 score: 55.9
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 15..84 score: 14.684326
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 101..170 score: 11.746893
None	No IPR available	GENE3D	3.30.160.20		coord: 16..97 e-value: 7.2E-25 score: 88.9
None	No IPR available	GENE3D	3.30.160.20		coord: 98..170 e-value: 4.0E-23 score: 83.5
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 103..173
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 16..84
IPR011907	Ribonuclease III	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 1..226
IPR031147	Double-stranded RNA-binding protein	PANTHER	PTHR11207:SF1	DOUBLE-STRANDED RNA-BINDING PROTEIN 1	coord: 1..226
IPR044451	AtDRB-like, second double-stranded RNA binding domain, plant	CDD	cd19908	DSRM_AtDRB-like_rpt2	coord: 100..169 e-value: 6.93059E-31 score: 109.876
IPR044450	AtDRB-like, first double-stranded RNA binding domain, plant	CDD	cd19907	DSRM_AtDRB-like_rpt1	coord: 15..83 e-value: 7.96451E-31 score: 109.873

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g294380.m01	Csor.00g294380.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010589	leaf proximal/distal pattern formation
biological_process	GO:0010305	leaf vascular tissue pattern formation
biological_process	GO:0035279	mRNA destabilization-mediated gene silencing by miRNA
biological_process	GO:0031054	pre-miRNA processing
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009733	response to auxin
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0016075	rRNA catabolic process
cellular_component	GO:0010445	nuclear dicing body
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0035198	miRNA binding
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding