Csor.00g293780 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g293780
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionrhodanese-like domain-containing protein 4, chloroplastic
LocationCsor_Chr20: 7370110 .. 7370574 (+)
RNA-Seq ExpressionCsor.00g293780
SyntenyCsor.00g293780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCATTTTGCCAAGAGTCGAACCCAGGTGTATTGCTTGGAAGGCAATTATCCTAATCGTTGGACTACAAATGCTACATGGTGTTTTTATCAATATGTTCATGAAATAGAATCATAGGAAATTATTCAAATGTTTCTTTCAGTTTATTTTAGGAGGTTCTCACTTGGATTTGCGTGTTGCGCAGAATAGTGATCTTCCTTTGGTTAACATCGAAGTCATCTTTCAACCTTAGTAGTCTAACAGATGCCATTGCTAGTGCACTTGGTGTATGCATTTCTATTTCAATTTGTTTACTTAAACTAGATTTTCTCTAAGATTCTTGATTAACATTTACATGTAGGAGGATTGTGAAGGTCTACCTGTTGTTGTTGCTACCACAGCTATTGGACTAGGTGTAAAGGCTTTTACTAAGGTTGGCTCAAATCCTTTGCCTATGAAACTAAGGTTGGCTCATATGTTCTAA

mRNA sequence

ATGTGCATTTTGCCAAGAGTCGAACCCAGAATAGTGATCTTCCTTTGGTTAACATCGAAGTCATCTTTCAACCTTAGTAGTCTAACAGATGCCATTGCTAGTGCACTTGGTGAGGATTGTGAAGGTCTACCTGTTGTTGTTGCTACCACAGCTATTGGACTAGGTGTAAAGGCTTTTACTAAGGTTGGCTCAAATCCTTTGCCTATGAAACTAAGGTTGGCTCATATGTTCTAA

Coding sequence (CDS)

ATGTGCATTTTGCCAAGAGTCGAACCCAGAATAGTGATCTTCCTTTGGTTAACATCGAAGTCATCTTTCAACCTTAGTAGTCTAACAGATGCCATTGCTAGTGCACTTGGTGAGGATTGTGAAGGTCTACCTGTTGTTGTTGCTACCACAGCTATTGGACTAGGTGTAAAGGCTTTTACTAAGGTTGGCTCAAATCCTTTGCCTATGAAACTAAGGTTGGCTCATATGTTCTAA

Protein sequence

MCILPRVEPRIVIFLWLTSKSSFNLSSLTDAIASALGEDCEGLPVVVATTAIGLGVKAFTKVGSNPLPMKLRLAHMF
Homology
BLAST of Csor.00g293780 vs. NCBI nr
Match: KAG6571268.1 (hypothetical protein SDJN03_30183, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154 bits (388), Expect = 5.61e-47
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MCILPRVEPRIVIFLWLTSKSSFNLSSLTDAIASALGEDCEGLPVVVATTAIGLGVKAFT 60
          MCILPRVEPRIVIFLWLTSKSSFNLSSLTDAIASALGEDCEGLPVVVATTAIGLGVKAFT
Sbjct: 1  MCILPRVEPRIVIFLWLTSKSSFNLSSLTDAIASALGEDCEGLPVVVATTAIGLGVKAFT 60

Query: 61 KVGSNPLPMKLRLAHMF 77
          KVGSNPLPMKLRLAHMF
Sbjct: 61 KVGSNPLPMKLRLAHMF 77

BLAST of Csor.00g293780 vs. NCBI nr
Match: KAG6583628.1 (hypothetical protein SDJN03_19560, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103 bits (258), Expect = 3.34e-27
Identity = 60/73 (82.19%), Postives = 61/73 (83.56%), Query Frame = 0

Query: 10 RIVIFLWLTSKSSFNLSSLTDAIASALGEDCEGLPVV-----VATTAIGLGVKAFTKVGS 69
          RIVIFL LTSKSSFNLSSLTDA+     ED EGLPVV     VATTAIGLGVKAFTKVGS
Sbjct: 4  RIVIFLSLTSKSSFNLSSLTDALL----EDSEGLPVVATTAVVATTAIGLGVKAFTKVGS 63

Query: 70 NPLPMKLRLAHMF 77
          NPLPMKLRLAHMF
Sbjct: 64 NPLPMKLRLAHMF 72

BLAST of Csor.00g293780 vs. NCBI nr
Match: XP_022979639.1 (rhodanese-like domain-containing protein 4, chloroplastic [Cucurbita maxima])

HSP 1 Score: 62.4 bits (150), Expect = 4.20e-09
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 0

Query: 16  WLTSKSSFNLSSLTDAIASALGEDCEGLPVV---VATTAIGLGVKAFTK 61
           W+T KSSF+LSSLTDAIA ALGED EGLP V   VA  A G+GV AF +
Sbjct: 256 WITPKSSFSLSSLTDAIAGALGEDSEGLPAVATAVAAAATGVGVLAFAE 304

BLAST of Csor.00g293780 vs. NCBI nr
Match: XP_023527607.1 (rhodanese-like domain-containing protein 4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.8 bits (146), Expect = 1.47e-08
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 16  WLTSKSSFNLSSLTDAIASALGEDCEGLPVV---VATTAIGLGVKAFTK 61
           W+T KSSF+LSSLTDAIA A GED EGLP V   VA  A G+GV AF +
Sbjct: 256 WITPKSSFSLSSLTDAIAGAFGEDSEGLPAVATAVAAAATGVGVLAFAE 304

BLAST of Csor.00g293780 vs. NCBI nr
Match: XP_038896514.1 (rhodanese-like domain-containing protein 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 6.99e-08
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 16  WLTSKSSFNLSSLTDAIASALGEDCEGLPVV---VATTAIGLGVKAFTK 61
           WLT KS+ +LSSLTDAIA A GED EGLP V   VA  A G+G+ AFT+
Sbjct: 256 WLTPKSTLSLSSLTDAIAGAFGEDSEGLPAVATAVAAAATGVGLLAFTE 304

BLAST of Csor.00g293780 vs. ExPASy TrEMBL
Match: A0A6J1IX54 (rhodanese-like domain-containing protein 4, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479309 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.04e-09
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 0

Query: 16  WLTSKSSFNLSSLTDAIASALGEDCEGLPVV---VATTAIGLGVKAFTK 61
           W+T KSSF+LSSLTDAIA ALGED EGLP V   VA  A G+GV AF +
Sbjct: 256 WITPKSSFSLSSLTDAIAGALGEDSEGLPAVATAVAAAATGVGVLAFAE 304

BLAST of Csor.00g293780 vs. ExPASy TrEMBL
Match: A0A6J1E8N1 (rhodanese-like domain-containing protein 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431789 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.64e-08
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 16  WLTSKSSFNLSSLTDAIASALGEDCEGLPVV---VATTAIGLGVKAFTK 61
           W+T KSSF+LSSLTDAIA A GED EGLP V   VA    G GV AF +
Sbjct: 256 WITPKSSFSLSSLTDAIAGAFGEDSEGLPAVATAVAAAVTGAGVLAFAE 304

BLAST of Csor.00g293780 vs. ExPASy TrEMBL
Match: A0A0A0L8L6 (Rhodanese domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G119690 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.64e-08
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 16  WLTSKSSFNLSSLTDAIASALGEDCEGLPVV---VATTAIGLGVKAFTK 61
           WLT K   +LSSLTDAIA A GED EGLP V   VA  A GLG+ AFT+
Sbjct: 256 WLTPKPGLSLSSLTDAIAGAFGEDSEGLPAVATAVAAAATGLGLLAFTE 304

BLAST of Csor.00g293780 vs. ExPASy TrEMBL
Match: A0A5A7TZ61 (Rhodanese-like domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001190 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.62e-07
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 16  WLTSKSSFNLSSLTDAIASALGEDCEGLPVV---VATTAIGLGVKAFTK 61
           WLT K S +L SLTDAIA A GED EGLP V   VA  A G+G+ AFT+
Sbjct: 256 WLTPKPSLSLGSLTDAIAGAFGEDSEGLPAVATAVAAAATGIGLLAFTE 304

BLAST of Csor.00g293780 vs. ExPASy TrEMBL
Match: A0A1S3AUS3 (rhodanese-like domain-containing protein 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483198 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.62e-07
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 16  WLTSKSSFNLSSLTDAIASALGEDCEGLPVV---VATTAIGLGVKAFTK 61
           WLT K S +L SLTDAIA A GED EGLP V   VA  A G+G+ AFT+
Sbjct: 256 WLTPKPSLSLGSLTDAIAGAFGEDSEGLPAVATAVAAAATGIGLLAFTE 304

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6571268.15.61e-47100.00hypothetical protein SDJN03_30183, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583628.13.34e-2782.19hypothetical protein SDJN03_19560, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022979639.14.20e-0967.35rhodanese-like domain-containing protein 4, chloroplastic [Cucurbita maxima][more]
XP_023527607.11.47e-0865.31rhodanese-like domain-containing protein 4, chloroplastic [Cucurbita pepo subsp.... [more]
XP_038896514.16.99e-0863.27rhodanese-like domain-containing protein 4, chloroplastic [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1IX542.04e-0967.35rhodanese-like domain-containing protein 4, chloroplastic OS=Cucurbita maxima OX... [more]
A0A6J1E8N14.64e-0863.27rhodanese-like domain-containing protein 4, chloroplastic OS=Cucurbita moschata ... [more]
A0A0A0L8L68.64e-0863.27Rhodanese domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G119690 P... [more]
A0A5A7TZ611.62e-0761.22Rhodanese-like domain-containing protein 4 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A1S3AUS31.62e-0761.22rhodanese-like domain-containing protein 4, chloroplastic OS=Cucumis melo OX=365... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g293780.m01Csor.00g293780.m01mRNA