Csor.00g293260 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g293260
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionpolyamine-modulated factor 1-binding protein 1
LocationCsor_Chr10: 9043058 .. 9043351 (-)
RNA-Seq ExpressionCsor.00g293260
SyntenyCsor.00g293260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAGTGGGAGATAGGATTTGTAGGTTAGTTGAGAGTGAGAGATTGAAGAATGTGGAGATTGGGAGATTGAAAGATGAGAATAATGGGCTTGTGTTTAAAGTTGAGGAAGAAAGGGAGAAATGGATGAAGGTTTGTTGTGAGAGGGATGAAATTAAGACTAATTATGATGGATTGCTTGAGGAAATAGGATATTTGAGAAAGAAAATGATTGAAATGGAGAAAAATGAGAGAAGGGCTTTAAAAGAGACAGAGGATTTGAAGGTGAAATGCAAAGAAGTTGTCAGCTGA

mRNA sequence

ATGGATGAAGTGGGAGATAGGATTTGTAGGTTAGTTGAGAGTGAGAGATTGAAGAATGTGGAGATTGGGAGATTGAAAGATGAGAATAATGGGCTTGTGTTTAAAGTTGAGGAAGAAAGGGAGAAATGGATGAAGGTTTGTTGTGAGAGGGATGAAATTAAGACTAATTATGATGGATTGCTTGAGGAAATAGGATATTTGAGAAAGAAAATGATTGAAATGGAGAAAAATGAGAGAAGGGCTTTAAAAGAGACAGAGGATTTGAAGGTGAAATGCAAAGAAGTTGTCAGCTGA

Coding sequence (CDS)

ATGGATGAAGTGGGAGATAGGATTTGTAGGTTAGTTGAGAGTGAGAGATTGAAGAATGTGGAGATTGGGAGATTGAAAGATGAGAATAATGGGCTTGTGTTTAAAGTTGAGGAAGAAAGGGAGAAATGGATGAAGGTTTGTTGTGAGAGGGATGAAATTAAGACTAATTATGATGGATTGCTTGAGGAAATAGGATATTTGAGAAAGAAAATGATTGAAATGGAGAAAAATGAGAGAAGGGCTTTAAAAGAGACAGAGGATTTGAAGGTGAAATGCAAAGAAGTTGTCAGCTGA

Protein sequence

MDEVGDRICRLVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDGLLEEIGYLRKKMIEMEKNERRALKETEDLKVKCKEVVS
Homology
BLAST of Csor.00g293260 vs. NCBI nr
Match: KAG6590400.1 (hypothetical protein SDJN03_15823, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191 bits (486), Expect = 2.63e-61
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MDEVGDRICRLVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDGL 60
          MDEVGDRICRLVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDGL
Sbjct: 1  MDEVGDRICRLVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDGL 60

Query: 61 LEEIGYLRKKMIEMEKNERRALKETEDLKVKCKEVVS 97
          LEEIGYLRKKMIEMEKNERRALKETEDLKVKCKEVVS
Sbjct: 61 LEEIGYLRKKMIEMEKNERRALKETEDLKVKCKEVVS 97

BLAST of Csor.00g293260 vs. NCBI nr
Match: XP_022971789.1 (uncharacterized protein LOC111470467 [Cucurbita maxima])

HSP 1 Score: 155 bits (392), Expect = 3.07e-45
Identity = 79/97 (81.44%), Postives = 89/97 (91.75%), Query Frame = 0

Query: 1   MDEVGDRICRLVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDGL 60
           MDEVGDRICRLVESERLKNV+IGRLKDENNGLV KVEEEREKW+KVC ERDEI+ NYDGL
Sbjct: 16  MDEVGDRICRLVESERLKNVDIGRLKDENNGLVLKVEEEREKWLKVCWERDEIEDNYDGL 75

Query: 61  LEEIGYLRKKMIEMEKNERRALKETEDLKVKCKEVVS 97
            +EI  LRKKMIEMEKNE+R L+ETE LKVKCK++++
Sbjct: 76  FKEIRDLRKKMIEMEKNEKRDLEETEYLKVKCKKLLA 112

BLAST of Csor.00g293260 vs. NCBI nr
Match: XP_023524531.1 (uncharacterized protein LOC111788427 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156 bits (394), Expect = 9.91e-45
Identity = 80/95 (84.21%), Postives = 86/95 (90.53%), Query Frame = 0

Query: 1  MDEVGDRICRLVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDGL 60
          MDEVGDRICRL+ESERLKN +IGRLKDENNGLV KVEEEREKW KVC ERD IK N DGL
Sbjct: 1  MDEVGDRICRLIESERLKNGKIGRLKDENNGLVLKVEEEREKWTKVCYERDGIKANSDGL 60

Query: 61 LEEIGYLRKKMIEMEKNERRALKETEDLKVKCKEV 95
           EEIG LRKKMIEMEKNE+RAL+ETEDLKVKCK++
Sbjct: 61 FEEIGDLRKKMIEMEKNEKRALEETEDLKVKCKKL 95

BLAST of Csor.00g293260 vs. NCBI nr
Match: KAG6571252.1 (hypothetical protein SDJN03_30167, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147 bits (372), Expect = 1.47e-43
Identity = 79/95 (83.16%), Postives = 81/95 (85.26%), Query Frame = 0

Query: 1   MDEVGDRICRLVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDGL 60
           MD VGDRICRL ESERLKNVEI RLKDENN LV KVEEEREKWM VCCERD IK N  GL
Sbjct: 29  MDGVGDRICRLFESERLKNVEIERLKDENNALVLKVEEEREKWMNVCCERDGIKANSYGL 88

Query: 61  LEEIGYLRKKMIEMEKNERRALKETEDLKVKCKEV 95
           LEEIG L KKMIEMEKNERRAL+E EDLKVKC+ V
Sbjct: 89  LEEIGDLIKKMIEMEKNERRALEEREDLKVKCEVV 123

BLAST of Csor.00g293260 vs. NCBI nr
Match: KAG6586283.1 (hypothetical protein SDJN03_19016, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150 bits (379), Expect = 1.28e-42
Identity = 75/95 (78.95%), Postives = 85/95 (89.47%), Query Frame = 0

Query: 1   MDEVGDRICRLVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDGL 60
           M+E+G  ICRLVESER+KNVEIGRLK ENNGLV KVEEEREKWMKVCCERD IK ++DGL
Sbjct: 29  MEEMGGVICRLVESERVKNVEIGRLKGENNGLVLKVEEEREKWMKVCCERDGIKADFDGL 88

Query: 61  LEEIGYLRKKMIEMEKNERRALKETEDLKVKCKEV 95
            EE G LR+KM+EMEKNERRAL+E EDLKVKCK++
Sbjct: 89  FEETGDLRRKMVEMEKNERRALEEIEDLKVKCKKL 123

BLAST of Csor.00g293260 vs. ExPASy TrEMBL
Match: A0A6J1I9J8 (uncharacterized protein LOC111470467 OS=Cucurbita maxima OX=3661 GN=LOC111470467 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 1.48e-45
Identity = 79/97 (81.44%), Postives = 89/97 (91.75%), Query Frame = 0

Query: 1   MDEVGDRICRLVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDGL 60
           MDEVGDRICRLVESERLKNV+IGRLKDENNGLV KVEEEREKW+KVC ERDEI+ NYDGL
Sbjct: 16  MDEVGDRICRLVESERLKNVDIGRLKDENNGLVLKVEEEREKWLKVCWERDEIEDNYDGL 75

Query: 61  LEEIGYLRKKMIEMEKNERRALKETEDLKVKCKEVVS 97
            +EI  LRKKMIEMEKNE+R L+ETE LKVKCK++++
Sbjct: 76  FKEIRDLRKKMIEMEKNEKRDLEETEYLKVKCKKLLA 112

BLAST of Csor.00g293260 vs. ExPASy TrEMBL
Match: A0A6J1I2X9 (protein MNN4-like OS=Cucurbita maxima OX=3661 GN=LOC111470470 PE=4 SV=1)

HSP 1 Score: 143 bits (361), Expect = 8.78e-41
Identity = 76/97 (78.35%), Postives = 85/97 (87.63%), Query Frame = 0

Query: 1   MDEVGDRICRLVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDG- 60
           M+EVGDRICRLVESERLKNVEI RLKD+NNGLV KVEEEREKWMKVCCERD IK N D  
Sbjct: 98  MNEVGDRICRLVESERLKNVEIERLKDKNNGLVLKVEEEREKWMKVCCERDGIKANSDDE 157

Query: 61  LLEEIGYLRKKMIEMEKNERRALKETEDLKVKCKEVV 96
           L EE   LRKKMIE+EKNE+RAL+E EDL+VKCK+++
Sbjct: 158 LFEESRDLRKKMIELEKNEKRALEEIEDLEVKCKKLL 194

BLAST of Csor.00g293260 vs. ExPASy TrEMBL
Match: A0A6J1FD80 (polyamine-modulated factor 1-binding protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111444320 PE=4 SV=1)

HSP 1 Score: 150 bits (379), Expect = 1.53e-40
Identity = 75/95 (78.95%), Postives = 85/95 (89.47%), Query Frame = 0

Query: 1   MDEVGDRICRLVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDGL 60
           M+E+G  ICRLVESER+KNVEIGRLK ENNGLV KVEEEREKWMKVCCERD IK ++DGL
Sbjct: 118 MEEMGGVICRLVESERVKNVEIGRLKGENNGLVLKVEEEREKWMKVCCERDGIKADFDGL 177

Query: 61  LEEIGYLRKKMIEMEKNERRALKETEDLKVKCKEV 95
            EE G LR+KM+EMEKNERRAL+E EDLKVKCK++
Sbjct: 178 FEETGDLRRKMVEMEKNERRALEEIEDLKVKCKKL 212

BLAST of Csor.00g293260 vs. ExPASy TrEMBL
Match: A0A6J1HKX2 (polyamine-modulated factor 1-binding protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111465485 PE=4 SV=1)

HSP 1 Score: 143 bits (361), Expect = 5.40e-38
Identity = 73/95 (76.84%), Postives = 82/95 (86.32%), Query Frame = 0

Query: 1   MDEVGDRICRLVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDGL 60
           M+E+G  ICRLVESER KNVEIGRLK ENNGLV K EEEREKWMKVC ERD IK ++DGL
Sbjct: 117 MEEMGGVICRLVESEREKNVEIGRLKGENNGLVLKAEEEREKWMKVCSERDGIKADFDGL 176

Query: 61  LEEIGYLRKKMIEMEKNERRALKETEDLKVKCKEV 95
            EE G LR+KM+EMEKNERRAL+E EDLKVKCK++
Sbjct: 177 FEETGDLRRKMVEMEKNERRALEEIEDLKVKCKKL 211

BLAST of Csor.00g293260 vs. ExPASy TrEMBL
Match: A0A5D3D489 (Cingulin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00730 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 1.64e-27
Identity = 59/97 (60.82%), Postives = 76/97 (78.35%), Query Frame = 0

Query: 1   MDEVGDRICRLVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDGL 60
           ++E+   I  L+ESER+K +EI  LK E NGLV +VEEEREKW  VCCERDEIK  +DGL
Sbjct: 113 IEEMSGGIFGLLESERVKGLEIRNLKAEINGLVLEVEEEREKWRGVCCERDEIKVEFDGL 172

Query: 61  LEEIGYLRKKMIEMEKNERRALKETEDLKVKCKEVVS 97
           L+E G LR K++EME+NERR L+E +DLK KCK+++S
Sbjct: 173 LKETGDLRGKVVEMERNERRTLEEIDDLKGKCKKLLS 209

BLAST of Csor.00g293260 vs. TAIR 10
Match: AT5G27330.1 (Prefoldin chaperone subunit family protein )

HSP 1 Score: 53.9 bits (128), Expect = 8.3e-08
Identity = 31/87 (35.63%), Postives = 51/87 (58.62%), Query Frame = 0

Query: 3   EVGDRICRLVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDGLLE 62
           E+G  +  L + +  +  EI  LK E NGL+ K+E ERE++ +VC ERD +K+ +D   E
Sbjct: 127 EMGVEVDWLFKEKSDRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVKSGFDLQSE 186

Query: 63  EIGYLRKKMIEMEKNERRALKETEDLK 90
           E+  L++ ++ +E  E    +E   LK
Sbjct: 187 EMNLLKESVVRLEMREVSLGEEVGRLK 213

BLAST of Csor.00g293260 vs. TAIR 10
Match: AT3G05130.1 (BEST Arabidopsis thaliana protein match is: Prefoldin chaperone subunit family protein (TAIR:AT5G27330.1); Has 171032 Blast hits to 82560 proteins in 3364 species: Archae - 2835; Bacteria - 33550; Metazoa - 71995; Fungi - 13365; Plants - 9598; Viruses - 592; Other Eukaryotes - 39097 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 8.6e-05
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 0

Query: 11  LVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDGLLEEIGYLRKK 70
           LV+ +  +  EI  LK E   L  KVE E+E+  KVC ERD IK  +D   EE+  L++ 
Sbjct: 136 LVKEKSDRESEIRVLKGEAIELTGKVEIEKEQLRKVCDERDLIKNGFDLQHEEVNRLKEC 195

Query: 71  MIEMEKNE 79
           ++ +E+ E
Sbjct: 196 VVRLEEKE 203

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6590400.12.63e-61100.00hypothetical protein SDJN03_15823, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022971789.13.07e-4581.44uncharacterized protein LOC111470467 [Cucurbita maxima][more]
XP_023524531.19.91e-4584.21uncharacterized protein LOC111788427 [Cucurbita pepo subsp. pepo][more]
KAG6571252.11.47e-4383.16hypothetical protein SDJN03_30167, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6586283.11.28e-4278.95hypothetical protein SDJN03_19016, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1I9J81.48e-4581.44uncharacterized protein LOC111470467 OS=Cucurbita maxima OX=3661 GN=LOC111470467... [more]
A0A6J1I2X98.78e-4178.35protein MNN4-like OS=Cucurbita maxima OX=3661 GN=LOC111470470 PE=4 SV=1[more]
A0A6J1FD801.53e-4078.95polyamine-modulated factor 1-binding protein 1 OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1HKX25.40e-3876.84polyamine-modulated factor 1-binding protein 1 OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A5D3D4891.64e-2760.82Cingulin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00730 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT5G27330.18.3e-0835.63Prefoldin chaperone subunit family protein [more]
AT3G05130.18.6e-0539.71BEST Arabidopsis thaliana protein match is: Prefoldin chaperone subunit family p... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g293260.m01Csor.00g293260.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane