Csor.00g293250 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g293250
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionMajor pollen allergen Ole e 6-like
LocationCsor_Chr10: 9099921 .. 9100422 (+)
RNA-Seq ExpressionCsor.00g293250
SyntenyCsor.00g293250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGTTGTGGTGGTAAACGTACTACAATTCTCGACGGCTGACAATACAGCTGAAATGGAGGCAAAATTTAAGTCGTTTTTTGGTAACCTAGACAATGTGAAGGAAAAATTCAAGTCGTGTGTTGAAACCTGCAACGAGGGATGCAATAACCAAGCTTCTTGTCATACTGAGTGTGAGACAAGTTGCGGCAGAAAAGAAGTTTCTGGTACTTTTTTCAATCTCTTTCAATCATTTTAAAAATTCTTTTCAACAAAGAGGTAAGCATTCATTCCTTCAAAGAAAAAAAAAAAAAAAAATTGGGCAAAGTTCGATTTCAAGTTATTTTATTAGTTTGATAAAATTAAATGTTTATAATGAAATTTGATACCTAAATTTAAAGTAACATGATATATTTTCTTTTTTTTTAGTTTTATCTCAAAATTTAAAATTTTTTTAATTTTATTTTTTTTGTTGTATTTATCTTGCAGATGAACTTCACATCAATGTACCGGCACATTGA

mRNA sequence

ATGTGTGTTGTGGTGGTAAACGTACTACAATTCTCGACGGCTGACAATACAGCTGAAATGGAGGCAAAATTTAAGTCGTTTTTTGGTAACCTAGACAATGTGAAGGAAAAATTCAAGTCGTGTGTTGAAACCTGCAACGAGGGATGCAATAACCAAGCTTCTTGTCATACTGAGTGTGAGACAAGTTGCGGCAGAAAAGAAGTTTCTGATGAACTTCACATCAATGTACCGGCACATTGA

Coding sequence (CDS)

ATGTGTGTTGTGGTGGTAAACGTACTACAATTCTCGACGGCTGACAATACAGCTGAAATGGAGGCAAAATTTAAGTCGTTTTTTGGTAACCTAGACAATGTGAAGGAAAAATTCAAGTCGTGTGTTGAAACCTGCAACGAGGGATGCAATAACCAAGCTTCTTGTCATACTGAGTGTGAGACAAGTTGCGGCAGAAAAGAAGTTTCTGATGAACTTCACATCAATGTACCGGCACATTGA

Protein sequence

MCVVVVNVLQFSTADNTAEMEAKFKSFFGNLDNVKEKFKSCVETCNEGCNNQASCHTECETSCGRKEVSDELHINVPAH
Homology
BLAST of Csor.00g293250 vs. NCBI nr
Match: KAG6590401.1 (hypothetical protein SDJN03_15824, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166 bits (419), Expect = 1.20e-51
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1  MCVVVVNVLQFSTADNTAEMEAKFKSFFGNLDNVKEKFKSCVETCNEGCNNQASCHTECE 60
          MCVVVVNVLQFSTADNTAEMEAKFKSFFGNLDNVKEKFKSCVETCNEGCNNQASCHTECE
Sbjct: 1  MCVVVVNVLQFSTADNTAEMEAKFKSFFGNLDNVKEKFKSCVETCNEGCNNQASCHTECE 60

Query: 61 TSCGRKEVSDELHINVPAH 79
          TSCGRKEVSDELHINVPAH
Sbjct: 61 TSCGRKEVSDELHINVPAH 79

BLAST of Csor.00g293250 vs. NCBI nr
Match: KAG6590395.1 (hypothetical protein SDJN03_15818, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145 bits (365), Expect = 2.50e-43
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 0

Query: 1  MCVVVVNVLQFSTADNTAEMEAKFKSFFGNLDNVKEKFKSCVETCNEGCNNQASCHTECE 60
          +CVVVV+ L+FSTADNTA+MEA FKSFFGNLD VKEKFKSCVETCNEGCNN+ASCHTECE
Sbjct: 7  VCVVVVSALRFSTADNTADMEANFKSFFGNLDGVKEKFKSCVETCNEGCNNKASCHTECE 66

Query: 61 TSCGRKEVSDELHINVPA 78
          T CG+KEV+DELHINVPA
Sbjct: 67 THCGKKEVADELHINVPA 84

BLAST of Csor.00g293250 vs. NCBI nr
Match: KAG6590397.1 (hypothetical protein SDJN03_15820, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103 bits (258), Expect = 5.83e-27
Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 0

Query: 1  MCVVVVNVLQFSTADNT-AEMEAKFKSFFGNLDNVKEKFKSCVETCNEGCNNQASCHTEC 60
          MCV++VNVLQFSTAD T AEMEAK KSFF +   VKEK K+C+ETCN+GC     CH++C
Sbjct: 11 MCVLLVNVLQFSTADKTTAEMEAKMKSFFSDFGTVKEKLKTCIETCNKGCKGNNKCHSDC 70

Query: 61 ETSCGRKEVSDELHINVP 77
           T+CG+KEV+D+ ++ +P
Sbjct: 71 ATNCGKKEVADKYNMKMP 88

BLAST of Csor.00g293250 vs. NCBI nr
Match: KAG6590396.1 (hypothetical protein SDJN03_15819, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102 bits (255), Expect = 1.67e-26
Identity = 46/78 (58.97%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 1  MCVVVVNVLQFSTADNT-AEMEAKFKSFFGNLDNVKEKFKSCVETCNEGCNNQASCHTEC 60
          +CV++VN+LQFSTAD T AEMEAK KS F +   VKEK K+C+ETCN+GC     CH++C
Sbjct: 11 ICVLLVNILQFSTADKTTAEMEAKMKSLFSDFGTVKEKLKTCIETCNKGCKGNNKCHSDC 70

Query: 61 ETSCGRKEVSDELHINVP 77
          ET+CG+KEV+D+ +I  P
Sbjct: 71 ETNCGKKEVADKFNIKFP 88

BLAST of Csor.00g293250 vs. NCBI nr
Match: KAG6595593.1 (hypothetical protein SDJN03_12146, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.4 bits (228), Expect = 2.05e-22
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 0

Query: 1  MCVVVVNVLQFSTADNTAEMEAKFKSFFGNLDNVKEKFKSCVETCNEGCNNQASCHTECE 60
          MCV+VV+ LQFSTAD + EMEAKFKSFF +   V+ KFKSC  TC + C N ASC ++C+
Sbjct: 11 MCVLVVSALQFSTADKSTEMEAKFKSFFSDFGTVEAKFKSCAATCQKKCTN-ASCRSKCD 70

Query: 61 TSCGRKEVSDELHINVP 77
            CG+KEV ++  I +P
Sbjct: 71 ADCGKKEVENKFKIKIP 86

BLAST of Csor.00g293250 vs. ExPASy TrEMBL
Match: A0A5A7T3F9 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold494G00090 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.46e-10
Identity = 37/81 (45.68%), Postives = 48/81 (59.26%), Query Frame = 0

Query: 1  MC-VVVVNVLQFSTADNTAE----MEAKFKSFFGNLDNVKEKFKSCVETCNEGC----NN 60
          MC VVVV  LQFS AD TAE    +E + K     + NV  +FKSCVETC + C    + 
Sbjct: 11 MCIVVVVGSLQFSRADMTAERDTEIEMRSKLLQSEISNVMPQFKSCVETCAKACIAKDSA 70

Query: 61 QASCHTECETSCGRKEVSDEL 72
            SCH+ C+  C +KEV D++
Sbjct: 71 NTSCHSTCDKDCMKKEVVDKI 91

BLAST of Csor.00g293250 vs. ExPASy TrEMBL
Match: A0A5D3BCS2 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00230 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.08e-09
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 0

Query: 1  MCVVVVNVLQFSTA---DNTAEMEAKFKSFFGNLDNVKEKFKSCVETCNEGC----NNQA 60
          MC+VVV  LQF++A   D  A+ EAKF +          K+KSC +TC + C    + Q+
Sbjct: 11 MCIVVVAALQFASANKEDEVAKYEAKFDA----------KYKSCFKTCEKECLENGSGQS 70

Query: 61 SCHTECETSCGRKEVSDELHINV 76
           C  +C+  C  KEV+D+LHI +
Sbjct: 71 YCEVKCDEDCNEKEVADKLHIEL 83

BLAST of Csor.00g293250 vs. ExPASy TrEMBL
Match: A0A1S3C530 (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.08e-09
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 0

Query: 1  MCVVVVNVLQFSTA---DNTAEMEAKFKSFFGNLDNVKEKFKSCVETCNEGC----NNQA 60
          MC+VVV  LQF++A   D  A+ EAKF +          K+KSC +TC + C    + Q+
Sbjct: 11 MCIVVVAALQFASANKEDEVAKYEAKFDA----------KYKSCFKTCEKECLENGSGQS 70

Query: 61 SCHTECETSCGRKEVSDELHINV 76
           C  +C+  C  KEV+D+LHI +
Sbjct: 71 YCEVKCDEDCNEKEVADKLHIEL 83

BLAST of Csor.00g293250 vs. ExPASy TrEMBL
Match: A0A0A0KPA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.21e-08
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 1  MCVVVVNVLQFSTA--DNTAEMEAKFKSFFGNLDNVKEKFKSCVETCNEGC----NNQAS 60
          MC+VVV  LQF+ A  ++ A+ EAKF +          K+KSC ETC + C    + Q+ 
Sbjct: 11 MCIVVVAALQFANANKEDVAKYEAKFDA----------KYKSCFETCEKECLRYGSGQSY 70

Query: 61 CHTECETSCGRKEVSDELHINV 76
          C  +C+  C  KE +D+LHI +
Sbjct: 71 CEVKCDEDCDEKEAADKLHIEL 82

BLAST of Csor.00g293250 vs. ExPASy TrEMBL
Match: A0A5A7SXV7 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13030G00010 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.16e-08
Identity = 35/77 (45.45%), Postives = 44/77 (57.14%), Query Frame = 0

Query: 1  MC-VVVVNVLQFSTADNTA----EMEAKFKSFFGNLDNVKEKFKSCVETCNEGC----NN 60
          MC VVVV  LQFS AD TA    E+E + K     + +V  +FKSCVETC + C      
Sbjct: 11 MCIVVVVGSLQFSRADMTADRDTEIEMRSKLLQSEISSVMPQFKSCVETCEKACIAKDGA 70

Query: 61 QASCHTECETSCGRKEV 68
            SCH+ C+  C +KEV
Sbjct: 71 NTSCHSTCDKDCMKKEV 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6590401.11.20e-51100.00hypothetical protein SDJN03_15824, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590395.12.50e-4385.90hypothetical protein SDJN03_15818, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590397.15.83e-2760.26hypothetical protein SDJN03_15820, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590396.11.67e-2658.97hypothetical protein SDJN03_15819, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595593.12.05e-2255.84hypothetical protein SDJN03_12146, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A5A7T3F95.46e-1045.68Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
A0A5D3BCS23.08e-0939.76Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3C5303.08e-0939.76major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 ... [more]
A0A0A0KPA71.21e-0839.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222980 PE=4 SV=1[more]
A0A5A7SXV73.16e-0845.45Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036466Pollen allergen ole e 6 superfamilyGENE3D1.10.287.720Pollen allergen ole e 6coord: 34..77
e-value: 9.9E-7
score: 30.2
IPR036466Pollen allergen ole e 6 superfamilySUPERFAMILY111388Pollen allergen ole e 6coord: 36..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g293250.m01Csor.00g293250.m01mRNA