Csor.00g293240 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g293240
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	nuclear transcription factor Y subunit B-4-like
Location	Csor_Chr10: 9154287 .. 9154688 (-)
RNA-Seq Expression	Csor.00g293240
Synteny	Csor.00g293240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAGAACAATGGAGATGAGCTTCAACTACCAATTGCCAACGTTGGGAGATTAATGAAGAAGATTCTTCCCCAAAAGGCCAAGATTTCCAAAGAAGCCAAAGCGACAATGCAAGAATGTGCAACAGAGTTCATCAGCTTCGTAACAAGTGAAGCAGCTGAAAAATGTCACAAAGACAATCGAAGAACTCTCAATGGCGACGATATTTGTTGGGCTTTTGGTTCTTTTGGCTTAGACAACTATGCTGAGGCTTCTGCCAAGTACTTGCTCAAATATAGGGACGTCGAGAGAATCAACGCTCAATTCAAAACCAATATCGCTCCAGAACAACAAAAACACGATCAAGAACAAGAACAAGAACTTGAGTTTTATCATGGTGAAATCGGTGAAACGTCTTAA

mRNA sequence

ATGGGAGAGAACAATGGAGATGAGCTTCAACTACCAATTGCCAACGTTGGGAGATTAATGAAGAAGATTCTTCCCCAAAAGGCCAAGATTTCCAAAGAAGCCAAAGCGACAATGCAAGAATGTGCAACAGAGTTCATCAGCTTCGTAACAAGTGAAGCAGCTGAAAAATGTCACAAAGACAATCGAAGAACTCTCAATGGCGACGATATTTGTTGGGCTTTTGGTTCTTTTGGCTTAGACAACTATGCTGAGGCTTCTGCCAAGTACTTGCTCAAATATAGGGACGTCGAGAGAATCAACGCTCAATTCAAAACCAATATCGCTCCAGAACAACAAAAACACGATCAAGAACAAGAACAAGAACTTGAGTTTTATCATGGTGAAATCGGTGAAACGTCTTAA

Coding sequence (CDS)

ATGGGAGAGAACAATGGAGATGAGCTTCAACTACCAATTGCCAACGTTGGGAGATTAATGAAGAAGATTCTTCCCCAAAAGGCCAAGATTTCCAAAGAAGCCAAAGCGACAATGCAAGAATGTGCAACAGAGTTCATCAGCTTCGTAACAAGTGAAGCAGCTGAAAAATGTCACAAAGACAATCGAAGAACTCTCAATGGCGACGATATTTGTTGGGCTTTTGGTTCTTTTGGCTTAGACAACTATGCTGAGGCTTCTGCCAAGTACTTGCTCAAATATAGGGACGTCGAGAGAATCAACGCTCAATTCAAAACCAATATCGCTCCAGAACAACAAAAACACGATCAAGAACAAGAACAAGAACTTGAGTTTTATCATGGTGAAATCGGTGAAACGTCTTAA

Protein sequence

MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKHDQEQEQELEFYHGEIGETS

Homology

[Close]

BLAST of Csor.00g293240 vs. ExPASy Swiss-Prot
Match: O04027 (Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana OX=3702 GN=NFYB4 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.4e-31
Identity = 64/88 (72.73%), Postives = 76/88 (86.36%), Query Frame = 0


Query: 11 LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDI 70
          LPIANVGRLMK+ILP  AKISKEAK T+QECATEFISFVT EA+EKCH++NR+T+NGDDI
Sbjct: 8  LPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTVNGDDI 67

Query: 71 CWAFGSFGLDNYAEASAKYLLKYRDVER 99
           WA  + GLDNYA+A  ++L KYR+ ER
Sbjct: 68 WWALSTLGLDNYADAVGRHLHKYREAER 95

[Close]

BLAST of Csor.00g293240 vs. ExPASy Swiss-Prot
Match: O82248 (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NFYB5 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-28
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 11  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDI 70
           LPIANVGR+MK ILP  AK+SKEAK TMQEC +EFISFVT EA++KCHK+ R+T+NGDDI
Sbjct: 56  LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 115

Query: 71  CWAFGSFGLDNYAEASAKYLLKYRDVE 98
           CWA  + G D+YA    KYL +YR +E
Sbjct: 116 CWAMANLGFDDYAAQLKKYLHRYRVLE 142

[Close]

BLAST of Csor.00g293240 vs. ExPASy Swiss-Prot
Match: Q9SIT9 (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NFYB7 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.1e-26
Identity = 62/126 (49.21%), Postives = 85/126 (67.46%), Query Frame = 0


Query: 4   NNGDELQ---LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD 63
           NN ++ Q   LPIANVGR+MKK+LP   KISK+AK T+QEC +EFISFVT EA++KC ++
Sbjct: 31  NNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQRE 90

Query: 64  NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKHDQEQEQ 123
            R+T+NGDDI WA  + G ++Y      YL KYRD E      K N   +QQ+  Q+Q+ 
Sbjct: 91  KRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTE----GEKVNSPKQQQQRQQQQQI 150

Query: 124 ELEFYH 127
           + + +H
Sbjct: 151 QQQNHH 152

[Close]

BLAST of Csor.00g293240 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-24
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 11  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDI 70
           LPIANV R+MKK LP  AKISK+AK TMQEC +EFISFVT EA++KC K+ R+T+NGDD+
Sbjct: 32  LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91

Query: 71  CWAFGSFGLDNYAEASAKYLLKYRDVE 98
            WA  + G ++Y E    YL ++R++E
Sbjct: 92  LWAMTTLGFEDYVEPLKVYLQRFREIE 118

[Close]

BLAST of Csor.00g293240 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-24
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 11  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDI 70
           LPIANV R+MKK LP  AKISK+AK T+QEC +EFISF+T EA++KC ++ R+T+NGDD+
Sbjct: 26  LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 85

Query: 71  CWAFGSFGLDNYAEASAKYLLKYRDVE 98
            WA  + G ++Y E    YL KYR+VE
Sbjct: 86  LWAMTTLGFEDYVEPLKVYLQKYREVE 112

[Close]

BLAST of Csor.00g293240 vs. NCBI nr
Match: KAG6590402.1 (Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 267 bits (682), Expect = 4.72e-90
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD 60
           MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD
Sbjct: 1   MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD 60

Query: 61  NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKHDQEQEQ 120
           NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKHDQEQEQ
Sbjct: 61  NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKHDQEQEQ 120

Query: 121 ELEFYHGEIGETS 133
           ELEFYHGEIGETS
Sbjct: 121 ELEFYHGEIGETS 133

[Close]

BLAST of Csor.00g293240 vs. NCBI nr
Match: XP_022961414.1 (nuclear transcription factor Y subunit B-4-like [Cucurbita moschata])

HSP 1 Score: 255 bits (651), Expect = 2.21e-85
Identity = 129/133 (96.99%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD 60
           MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD
Sbjct: 1   MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD 60

Query: 61  NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKHDQEQEQ 120
           NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKHDQE   
Sbjct: 61  NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKHDQE--- 120

Query: 121 ELEFYHGEIGETS 133
            LEFYHGEIGETS
Sbjct: 121 -LEFYHGEIGETS 129

[Close]

BLAST of Csor.00g293240 vs. NCBI nr
Match: XP_022968852.1 (nuclear transcription factor Y subunit B-4-like [Cucurbita maxima])

HSP 1 Score: 252 bits (643), Expect = 5.86e-84
Identity = 129/143 (90.21%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD 60
           MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD
Sbjct: 1   MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD 60

Query: 61  NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKH------ 120
           NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRD+ERINAQFKTNIA EQQ+H      
Sbjct: 61  NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDIERINAQFKTNIAREQQEHGQEREQ 120

Query: 121 ----DQEQEQELEFYHGEIGETS 133
               +QEQEQELEFYHGEIGETS
Sbjct: 121 EQEQEQEQEQELEFYHGEIGETS 143

[Close]

BLAST of Csor.00g293240 vs. NCBI nr
Match: XP_023546470.1 (nuclear transcription factor Y subunit B-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248 bits (632), Expect = 2.36e-82
Identity = 127/137 (92.70%), Postives = 128/137 (93.43%), Query Frame = 0


Query: 1   MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD 60
           MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD
Sbjct: 1   MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD 60

Query: 61  NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKHDQ---- 120
           NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQ+HDQ    
Sbjct: 61  NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQRHDQDQEQ 120

Query: 121 --EQEQELEFYHGEIGE 131
             EQEQELEF HGE  E
Sbjct: 121 KQEQEQELEFNHGETSE 137

[Close]

BLAST of Csor.00g293240 vs. NCBI nr
Match: KAA0050890.1 (nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (438), Expect = 9.76e-53
Identity = 94/135 (69.63%), Postives = 104/135 (77.04%), Query Frame = 0


Query: 4   NNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNR 63
           NNGDE L+LPIANV R+MKKI+PQK KISKEAK TMQECA EFISFVTSEAA++CH +NR
Sbjct: 5   NNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENR 64

Query: 64  RTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-QFKTNIAPE---QQKHDQEQ 123
           RTLNGDDICWAF S GLDNYAE  AKYLLKYR+VERI   ++K  I      Q   D+EQ
Sbjct: 65  RTLNGDDICWAFASSGLDNYAEVFAKYLLKYREVERIKVDEYKCKITQRLLPQDDDDKEQ 124

Query: 124 EQELEFYHGEIGETS 133
           E       GEIGETS
Sbjct: 125 EDNHRSIDGEIGETS 139

[Close]

BLAST of Csor.00g293240 vs. ExPASy TrEMBL
Match: A0A6J1HDY6 (nuclear transcription factor Y subunit B-4-like OS=Cucurbita moschata OX=3662 GN=LOC111461996 PE=3 SV=1)

HSP 1 Score: 255 bits (651), Expect = 1.07e-85
Identity = 129/133 (96.99%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD 60
           MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD
Sbjct: 1   MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD 60

Query: 61  NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKHDQEQEQ 120
           NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKHDQE   
Sbjct: 61  NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKHDQE--- 120

Query: 121 ELEFYHGEIGETS 133
            LEFYHGEIGETS
Sbjct: 121 -LEFYHGEIGETS 129

[Close]

BLAST of Csor.00g293240 vs. ExPASy TrEMBL
Match: A0A6J1HUN8 (nuclear transcription factor Y subunit B-4-like OS=Cucurbita maxima OX=3661 GN=LOC111467987 PE=3 SV=1)

HSP 1 Score: 252 bits (643), Expect = 2.84e-84
Identity = 129/143 (90.21%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD 60
           MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD
Sbjct: 1   MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD 60

Query: 61  NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKH------ 120
           NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRD+ERINAQFKTNIA EQQ+H      
Sbjct: 61  NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDIERINAQFKTNIAREQQEHGQEREQ 120

Query: 121 ----DQEQEQELEFYHGEIGETS 133
               +QEQEQELEFYHGEIGETS
Sbjct: 121 EQEQEQEQEQELEFYHGEIGETS 143

[Close]

BLAST of Csor.00g293240 vs. ExPASy TrEMBL
Match: A0A5A7U6S7 (Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold761G00150 PE=3 SV=1)

HSP 1 Score: 173 bits (438), Expect = 4.73e-53
Identity = 94/135 (69.63%), Postives = 104/135 (77.04%), Query Frame = 0


Query: 4   NNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNR 63
           NNGDE L+LPIANV R+MKKI+PQK KISKEAK TMQECA EFISFVTSEAA++CH +NR
Sbjct: 5   NNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENR 64

Query: 64  RTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-QFKTNIAPE---QQKHDQEQ 123
           RTLNGDDICWAF S GLDNYAE  AKYLLKYR+VERI   ++K  I      Q   D+EQ
Sbjct: 65  RTLNGDDICWAFASSGLDNYAEVFAKYLLKYREVERIKVDEYKCKITQRLLPQDDDDKEQ 124

Query: 124 EQELEFYHGEIGETS 133
           E       GEIGETS
Sbjct: 125 EDNHRSIDGEIGETS 139

[Close]

BLAST of Csor.00g293240 vs. ExPASy TrEMBL
Match: A0A5D3CG76 (Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003890 PE=3 SV=1)

HSP 1 Score: 170 bits (431), Expect = 5.49e-52
Identity = 93/135 (68.89%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 4   NNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNR 63
           NNGDE L+LPIANV R+MKKI+PQK KISKEAK TMQECA EFISFVTSEAA++CH +NR
Sbjct: 5   NNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENR 64

Query: 64  RTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-QFKTNIAPE---QQKHDQEQ 123
           RTLNGDDICWAF S GLDNYAE  AKYL KYR+VERI   ++K  I      Q   D+EQ
Sbjct: 65  RTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLLPQDDDDKEQ 124

Query: 124 EQELEFYHGEIGETS 133
           E       GEIGETS
Sbjct: 125 EDNHRSIDGEIGETS 139

[Close]

BLAST of Csor.00g293240 vs. ExPASy TrEMBL
Match: A0A1S3BRX1 (nuclear transcription factor Y subunit B-4 OS=Cucumis melo OX=3656 GN=LOC103492518 PE=3 SV=1)

HSP 1 Score: 170 bits (431), Expect = 5.49e-52
Identity = 93/135 (68.89%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 4   NNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNR 63
           NNGDE L+LPIANV R+MKKI+PQK KISKEAK TMQECA EFISFVTSEAA++CH +NR
Sbjct: 5   NNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENR 64

Query: 64  RTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-QFKTNIAPE---QQKHDQEQ 123
           RTLNGDDICWAF S GLDNYAE  AKYL KYR+VERI   ++K  I      Q   D+EQ
Sbjct: 65  RTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLLPQDDDDKEQ 124

Query: 124 EQELEFYHGEIGETS 133
           E       GEIGETS
Sbjct: 125 EDNHRSIDGEIGETS 139

[Close]

BLAST of Csor.00g293240 vs. TAIR 10
Match: AT1G09030.1 (nuclear factor Y, subunit B4 )

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-32
Identity = 64/88 (72.73%), Postives = 76/88 (86.36%), Query Frame = 0


Query: 11 LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDI 70
          LPIANVGRLMK+ILP  AKISKEAK T+QECATEFISFVT EA+EKCH++NR+T+NGDDI
Sbjct: 8  LPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTVNGDDI 67

Query: 71 CWAFGSFGLDNYAEASAKYLLKYRDVER 99
           WA  + GLDNYA+A  ++L KYR+ ER
Sbjct: 68 WWALSTLGLDNYADAVGRHLHKYREAER 95

[Close]

BLAST of Csor.00g293240 vs. TAIR 10
Match: AT2G47810.1 (nuclear factor Y, subunit B5 )

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-29
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 11  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDI 70
           LPIANVGR+MK ILP  AK+SKEAK TMQEC +EFISFVT EA++KCHK+ R+T+NGDDI
Sbjct: 56  LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 115

Query: 71  CWAFGSFGLDNYAEASAKYLLKYRDVE 98
           CWA  + G D+YA    KYL +YR +E
Sbjct: 116 CWAMANLGFDDYAAQLKKYLHRYRVLE 142

[Close]

BLAST of Csor.00g293240 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-27
Identity = 62/126 (49.21%), Postives = 85/126 (67.46%), Query Frame = 0


Query: 4   NNGDELQ---LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKD 63
           NN ++ Q   LPIANVGR+MKK+LP   KISK+AK T+QEC +EFISFVT EA++KC ++
Sbjct: 31  NNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQRE 90

Query: 64  NRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKHDQEQEQ 123
            R+T+NGDDI WA  + G ++Y      YL KYRD E      K N   +QQ+  Q+Q+ 
Sbjct: 91  KRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTE----GEKVNSPKQQQQRQQQQQI 150

Query: 124 ELEFYH 127
           + + +H
Sbjct: 151 QQQNHH 152

[Close]

BLAST of Csor.00g293240 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-25
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 11  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDI 70
           LPIANV R+MKK LP  AKISK+AK T+QEC +EFISF+T EA++KC ++ R+T+NGDD+
Sbjct: 26  LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 85

Query: 71  CWAFGSFGLDNYAEASAKYLLKYRDVE 98
            WA  + G ++Y E    YL KYR+VE
Sbjct: 86  LWAMTTLGFEDYVEPLKVYLQKYREVE 112

[Close]

BLAST of Csor.00g293240 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-25
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 11  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDI 70
           LPIANV R+MKK LP  AKISK+AK TMQEC +EFISFVT EA++KC K+ R+T+NGDD+
Sbjct: 32  LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91

Query: 71  CWAFGSFGLDNYAEASAKYLLKYRDVE 98
            WA  + G ++Y E    YL ++R++E
Sbjct: 92  LWAMTTLGFEDYVEPLKVYLQRFREIE 118

The following BLAST results are available for this feature:

BLAST of Csor.00g293240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04027	2.4e-31	72.73	Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O82248	1.9e-28	66.67	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SIT9	3.1e-26	49.21	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	1.7e-24	58.62	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O23310	1.7e-24	58.62	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Csor.00g293240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6590402.1	4.72e-90	100.00	Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subs...	[more]
XP_022961414.1	2.21e-85	96.99	nuclear transcription factor Y subunit B-4-like [Cucurbita moschata]	[more]
XP_022968852.1	5.86e-84	90.21	nuclear transcription factor Y subunit B-4-like [Cucurbita maxima]	[more]
XP_023546470.1	2.36e-82	92.70	nuclear transcription factor Y subunit B-4-like [Cucurbita pepo subsp. pepo]	[more]
KAA0050890.1	9.76e-53	69.63	nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa]	[more]

BLAST of Csor.00g293240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HDY6	1.07e-85	96.99	nuclear transcription factor Y subunit B-4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HUN8	2.84e-84	90.21	nuclear transcription factor Y subunit B-4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7U6S7	4.73e-53	69.63	Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3CG76	5.49e-52	68.89	Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3BRX1	5.49e-52	68.89	nuclear transcription factor Y subunit B-4 OS=Cucumis melo OX=3656 GN=LOC1034925...	[more]

BLAST of Csor.00g293240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09030.1	1.7e-32	72.73	nuclear factor Y, subunit B4	[more]
AT2G47810.1	1.4e-29	66.67	nuclear factor Y, subunit B5	[more]
AT2G13570.1	2.2e-27	49.21	nuclear factor Y, subunit B7	[more]
AT4G14540.1	1.2e-25	58.62	nuclear factor Y, subunit B3	[more]
AT5G47640.1	1.2e-25	58.62	nuclear factor Y, subunit B2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 57..75 score: 25.48 coord: 76..94 score: 28.11 coord: 38..56 score: 50.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..133
None	No IPR available	PANTHER	PTHR11064:SF83	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4	coord: 5..120
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 10..73 e-value: 4.9E-25 score: 87.6
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..129 e-value: 4.5E-38 score: 132.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 7..122
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 5..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g293240.m01	Csor.00g293240.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding