Csor.00g292860 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCATCTCTTTCCTTCAACATTAACCATGTTCCTGCCATGTTAAAAAGGTACATTTCTTTGACACCATCTTCTCATTTTAGGTTGGTTTGCCATCGATTCTGCCGTATTCAAAAGAGTAGGTCGGCTGCTGCTGCAAGAGCCAGAGGTTGAACACTACAAGCCTACGCAGGTGCTGATTGCAGAAGATTGTTTCAAGCTCTCAAGCATTCCTAGTGAGCGATTGACACAAGCTTTTGTTAATTCAGTGAAGAAGCTATTTGGTGGTAAGCCTGACACCGTTATTTTGTTTTTTTGATTAGTACCATGCTTTCATTGAGGATGAATGAAAAAAATACATGGGCATACAAAAAAAAAATAGTTCAGAAAGTGAGGAGCCAAGCTAAACTAAAAAGGGACTCCAATCAAGCATAATAAGGCCTAAAGTGTAATTATGAAAGTTTTTGAACACCAAGCCCAAAGAGAGATATTAAACCTAACAAGGGGCTAATTCTCCTAGAGAACTCATTAACCCATTAGCATTCTATTGTTTCTCTCAAGCCAAAGGCTTCATAAAACTGCACAACAATGGGGCAATGAGTATCAGTTATTGCAAAGGTTATGGTCTTGAGGAATGGATATTTGATATTGGTTAGTGAATGAATCAGGACTTGATTTTCTTCTCATTCTTTCAGAGAGAACTCATTTGAGATCTGGCTTCTTATTTGAAATATCTGGACTGTAGCCTTTTTGGCACATTCAACAAAAGGTCGATTTAGAGCCAAAGGTTTGCAAGCGGCTAAGAAACACTTCTTTATTGAATTAACAAAACCCTTTGTTAGTTATTTATCTATGAGTTATCTTTGTAACCAAATATAGTAGGGTTAGATTTATTAAAAAATGACGTGTCTGTGAGTCAATAAGCTTGACTTGTACATGATTTATTCTTTGCACGGTTTATTAATAGCAGAGTATTTATAGGTGAAGTTATTAATCATGGAGATGGAGCATTTGTAGGAGAAGTTATTAGTAGTGGAACATTTCTAGAAATATTAGTCCTGGAACAATTTTAGGAGAAATCACTGGTAGTGGAGCATTTCTAAGAGAGGTTATTAGTTGTGGAGCATTTTTACGAGAAGAATTGTTAGTGCTTCTTCCCTTTAAATAGCCTACGTTCTATTCACAACAAAAATTTACTCTCCCCTCGAGTTATCGTGTTATTTTTTTTCGCTTCTTTTTGTTTCGATTATTTGTTTCAATGTGCTTCGATCGGATGTCAAAACCATCATCTAGTATCAGACCTAGGATGCCGAAACAAATCCCGTCATCGCATAAAGTCATTGGGGGAGATGTGACGACGATACAGAACAGGAAGGAGAGGAGTGTAACGCTCACATACCCGTTACTCACAAAGAGTAACTATGTAGCGTGATCGATAAACATGCGTGTTAATTTGTTAGCACATGGTGTGTGGGTCGCCATCAAACATGGTGACAATATCGAGGAGCACAAGGACAAGATGACTCTTGTTGCCATCTACCAAGCAGTCGCGGAGGATGTCCTTCTCATGTTGGCAGAGAAAGACTCGACAAAGGCAGCATGGGAAACACCGCAAACAATGCATATGGGTGTATAATGGGTCAAGGAAGCAAAAGTGCAGATTTTGATGGGTGATTTCAAGGCTATCCGCATGAAAGACGGTTAGTCGGTGAACGACTTTACCATGAAGTTAACGATGATCGTCAACGGTATCTACTTGTTAAGAGACAAGGTGGAGGAGATCTCCTTCATCAAGAAGTTCCTCCAAGCTGTCTCCGAGATCATACAAATTGTTGCCTCCATTGAGTAGTCAACAACCTCAAGAACATGTCGGTTAAGGAGGTCGACAACCTTAAGAAAAAATGTTAACTAATTTGGAGTTCATCTGTGCTTTCAGATATAAATTTTCAATTGGGATGGATGATTACTTATGTAAAACTTCAACTACAGGCCATCTTATAAAATAGGCCTTGGGAATACTTGAATTCATCTCTGCTTTCGAATATAAATTTTCAATTGTTATGTACAATTACTAACTTGAGCCTTCAACTGCAGACCATCTTATAAAACAGATTAGCATCGGGAGTTATGTTGAGGACAAAGTTCCAAGTTTGAAGCATTTCATGATTGAAGAAAACGATGGCTATAAGCATATCATTCCATCCTTAGCTGCTCTTGTGAGGTCTAAGGTATTGCTTCAGAGGTATTGATCTTTGGATGAACTGCTACTCAAATTCTGTCGAGATAATTGATTGTGATGTATAATTGTGTTGAATTAAATGATGATCTTCACCCTCTTTTTATGCTTGTAGGCATGAGTTCAAAATCAATCACGGAGAATGGGTTAGGTCCTATAGTTCTCATTTGGGCCCAGGAAAATCAGAACGAATATCAGAATACATCAGGGTGGCAACGGATGAAAATACTGATCTAAGTCGCTCCGTTCAAATTGAACTGCGTGTAGCTCTTGCTGCTCTTCTTGAAGTATTATCTCTCTCTCTCTCACACAATTTACTAAAATTTTAAACTGAAATAATTCCAACTTAAAAATATTTGCATTTTGATTTCTACTGTTAACTTCTTTTGCTTTTTGTGTGGAAAAAACTCCCAATGACTAAATATGTGTTCTACGAGACGAATTGAATTAATTTTAATCAGGAATATTAATGGTAGCTATCTGTAATTTTGTCAGACTTTTTCTTTTGTGGTCAGGAGGGAGTTAGGGTAGGAAGAATTTTAGTTTAGTTTGTTGAAGATCGTTAGGAGAGGAGTCCCAAGTCTGTTAATTCACGGGTTGATCATGGGTTTATACGAGACATTAAGGAGAAACCAAAAGCAAAATCATGAGAGCTTATGTTTAAAGTGAACAATATCATACTATTGTGAAGAGTCGTGATTTCTAACCTGGTGCCAGAGTCATGCCCTTAACTTAGCCATGTCAATAGAGTCCTTAAATGTCAAACAAAGAAGTTGAGAGTTTCGAATGTGTAGTCAAAAGTGACTCGAGTGCCGAAGTGAAGGTGTAGTCAAAAGTGACTCAAGTGTCGAACAAAGGGTTTTCTTTGGATGGGGGCTCTAGAGAAGGAGTCGAGTCTCAATTAAGGGGAGGTTGTTCGAAGGCTCCATAGATCTCAGGGGAAGCTCTATGATATACTTTGTTCGAGGGGAGGATTGTTGAGATTTGTTGGAGGAGTCCCACGTTAGCTAATTAAGGAATGATCATGAGTTTATAAGTAATGAATACATATTGTCCTACTTTCATTTCAGGATTTCGGAGTTCTTGTAATTCCTACAGTCCCAGGTCCCCCTCCGAAACTAAGAACAGACATCTCGGAGCTACACGACTTTCGTGCAAAGGCTTTCAGTTTGCTCTCCATTGCTTCGGTCTCCGGAATCTGCCAGGTTCTCTCTCACTCTTTCTCTCTCTCTCTTGAAAGTTAAAGCAACCATATTGATGTATTTCTTGCCACCAACTAATGTGCAGGCTACCATACCTCTAGGACTGTACAACGGCCTTCCTGTGTCTATATCTTTGCTAGCAAAACATGGTTCAGATGGGTTTTTGCTCAATGTTGTTGACACTCTTTACAGCACTCTAAAACAAGAAGTTGAGGCAAGCTACTAA ATGTCATCTCTTTCCTTCAACATTAACCATGTTCCTGCCATGTTAAAAAGAGTAGGTCGGCTGCTGCTGCAAGAGCCAGAGGTTGAACACTACAAGCCTACGCAGGTGCTGATTGCAGAAGATTGTTTCAAGCTCTCAAGCATTCCTAGTGAGCGATTGACACAAGCTTTTGTTAATTCAGTGAAGAAGCTATTTGGTGACCATCTTATAAAACAGATTAGCATCGGGAGTTATGTTGAGGACAAAGTTCCAAGTTTGAAGCATTTCATGATTGAAGAAAACGATGGCTATAAGCATATCATTCCATCCTTAGCTGCTCTTGTGAGGTCTAAGGTATTGCTTCAGAGGCATGAGTTCAAAATCAATCACGGAGAATGGGTTAGGTCCTATAGTTCTCATTTGGGCCCAGGAAAATCAGAACGAATATCAGAATACATCAGGGTGGCAACGGATGAAAATACTGATCTAAGTCGCTCCGTTCAAATTGAACTGCGTGTAGCTCTTGCTGCTCTTCTTGAAGATTTCGGAGTTCTTGTAATTCCTACAGTCCCAGGTCCCCCTCCGAAACTAAGAACAGACATCTCGGAGCTACACGACTTTCGTGCAAAGGCTTTCAGTTTGCTCTCCATTGCTTCGGTCTCCGGAATCTGCCAGGCTACCATACCTCTAGGACTGTACAACGGCCTTCCTGTGTCTATATCTTTGCTAGCAAAACATGGTTCAGATGGGTTTTTGCTCAATGTTGTTGACACTCTTTACAGCACTCTAAAACAAGAAGTTGAGGCAAGCTACTAA ATGTCATCTCTTTCCTTCAACATTAACCATGTTCCTGCCATGTTAAAAAGAGTAGGTCGGCTGCTGCTGCAAGAGCCAGAGGTTGAACACTACAAGCCTACGCAGGTGCTGATTGCAGAAGATTGTTTCAAGCTCTCAAGCATTCCTAGTGAGCGATTGACACAAGCTTTTGTTAATTCAGTGAAGAAGCTATTTGGTGACCATCTTATAAAACAGATTAGCATCGGGAGTTATGTTGAGGACAAAGTTCCAAGTTTGAAGCATTTCATGATTGAAGAAAACGATGGCTATAAGCATATCATTCCATCCTTAGCTGCTCTTGTGAGGTCTAAGGTATTGCTTCAGAGGCATGAGTTCAAAATCAATCACGGAGAATGGGTTAGGTCCTATAGTTCTCATTTGGGCCCAGGAAAATCAGAACGAATATCAGAATACATCAGGGTGGCAACGGATGAAAATACTGATCTAAGTCGCTCCGTTCAAATTGAACTGCGTGTAGCTCTTGCTGCTCTTCTTGAAGATTTCGGAGTTCTTGTAATTCCTACAGTCCCAGGTCCCCCTCCGAAACTAAGAACAGACATCTCGGAGCTACACGACTTTCGTGCAAAGGCTTTCAGTTTGCTCTCCATTGCTTCGGTCTCCGGAATCTGCCAGGCTACCATACCTCTAGGACTGTACAACGGCCTTCCTGTGTCTATATCTTTGCTAGCAAAACATGGTTCAGATGGGTTTTTGCTCAATGTTGTTGACACTCTTTACAGCACTCTAAAACAAGAAGTTGAGGCAAGCTACTAA MSSLSFNINHVPAMLKRVGRLLLQEPEVEHYKPTQVLIAEDCFKLSSIPSERLTQAFVNSVKKLFGDHLIKQISIGSYVEDKVPSLKHFMIEENDGYKHIIPSLAALVRSKVLLQRHEFKINHGEWVRSYSSHLGPGKSERISEYIRVATDENTDLSRSVQIELRVALAALLEDFGVLVIPTVPGPPPKLRTDISELHDFRAKAFSLLSIASVSGICQATIPLGLYNGLPVSISLLAKHGSDGFLLNVVDTLYSTLKQEVEASY Homology
BLAST of Csor.00g292860 vs. ExPASy Swiss-Prot
Match: Q9FR37 (Amidase 1 OS=Arabidopsis thaliana OX=3702 GN=AMI1 PE=1 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 3.2e-67 Identity = 135/243 (55.56%), Postives = 176/243 (72.43%), Query Frame = 0
BLAST of Csor.00g292860 vs. ExPASy Swiss-Prot
Match: Q7XTK3 (Amidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=AMI1 PE=1 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 6.3e-55 Identity = 111/250 (44.40%), Postives = 161/250 (64.40%), Query Frame = 0
BLAST of Csor.00g292860 vs. ExPASy Swiss-Prot
Match: Q9MUK5 (Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum OX=3888 GN=TOC64 PE=1 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 5.0e-52 Identity = 109/250 (43.60%), Postives = 161/250 (64.40%), Query Frame = 0
BLAST of Csor.00g292860 vs. ExPASy Swiss-Prot
Match: Q9LVH5 (Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP64 PE=1 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 5.2e-49 Identity = 103/247 (41.70%), Postives = 152/247 (61.54%), Query Frame = 0
BLAST of Csor.00g292860 vs. ExPASy Swiss-Prot
Match: F4KCL7 (Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OM64 PE=1 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 9.8e-40 Identity = 92/251 (36.65%), Postives = 148/251 (58.96%), Query Frame = 0
BLAST of Csor.00g292860 vs. NCBI nr
Match: KAG6590387.1 (Amidase 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 517 bits (1332), Expect = 7.95e-185 Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0
BLAST of Csor.00g292860 vs. NCBI nr
Match: XP_022961361.1 (amidase 1-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 491 bits (1263), Expect = 9.73e-172 Identity = 250/252 (99.21%), Postives = 251/252 (99.60%), Query Frame = 0
BLAST of Csor.00g292860 vs. NCBI nr
Match: XP_022961359.1 (amidase 1-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 486 bits (1250), Expect = 9.89e-170 Identity = 250/254 (98.43%), Postives = 251/254 (98.82%), Query Frame = 0
BLAST of Csor.00g292860 vs. NCBI nr
Match: XP_022968724.1 (amidase 1 isoform X2 [Cucurbita maxima]) HSP 1 Score: 484 bits (1247), Expect = 2.64e-169 Identity = 247/252 (98.02%), Postives = 248/252 (98.41%), Query Frame = 0
BLAST of Csor.00g292860 vs. NCBI nr
Match: XP_022968723.1 (amidase 1 isoform X1 [Cucurbita maxima]) HSP 1 Score: 479 bits (1234), Expect = 2.68e-167 Identity = 247/254 (97.24%), Postives = 248/254 (97.64%), Query Frame = 0
BLAST of Csor.00g292860 vs. ExPASy TrEMBL
Match: A0A6J1HA58 (amidase 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461951 PE=3 SV=1) HSP 1 Score: 491 bits (1263), Expect = 4.71e-172 Identity = 250/252 (99.21%), Postives = 251/252 (99.60%), Query Frame = 0
BLAST of Csor.00g292860 vs. ExPASy TrEMBL
Match: A0A6J1HDT1 (amidase 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461951 PE=3 SV=1) HSP 1 Score: 486 bits (1250), Expect = 4.79e-170 Identity = 250/254 (98.43%), Postives = 251/254 (98.82%), Query Frame = 0
BLAST of Csor.00g292860 vs. ExPASy TrEMBL
Match: A0A6J1I0H5 (amidase 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467873 PE=3 SV=1) HSP 1 Score: 484 bits (1247), Expect = 1.28e-169 Identity = 247/252 (98.02%), Postives = 248/252 (98.41%), Query Frame = 0
BLAST of Csor.00g292860 vs. ExPASy TrEMBL
Match: A0A6J1HYY1 (amidase 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467873 PE=3 SV=1) HSP 1 Score: 479 bits (1234), Expect = 1.30e-167 Identity = 247/254 (97.24%), Postives = 248/254 (97.64%), Query Frame = 0
BLAST of Csor.00g292860 vs. ExPASy TrEMBL
Match: A0A1S3BQD5 (amidase 1-like OS=Cucumis melo OX=3656 GN=LOC103492181 PE=3 SV=1) HSP 1 Score: 423 bits (1087), Expect = 2.73e-145 Identity = 217/253 (85.77%), Postives = 231/253 (91.30%), Query Frame = 0
BLAST of Csor.00g292860 vs. TAIR 10
Match: AT1G08980.1 (amidase 1 ) HSP 1 Score: 256.5 bits (654), Expect = 2.3e-68 Identity = 135/243 (55.56%), Postives = 176/243 (72.43%), Query Frame = 0
BLAST of Csor.00g292860 vs. TAIR 10
Match: AT3G17970.1 (translocon at the outer membrane of chloroplasts 64-III ) HSP 1 Score: 196.1 bits (497), Expect = 3.7e-50 Identity = 103/247 (41.70%), Postives = 152/247 (61.54%), Query Frame = 0
BLAST of Csor.00g292860 vs. TAIR 10
Match: AT5G09420.1 (translocon at the outer membrane of chloroplasts 64-V ) HSP 1 Score: 165.2 bits (417), Expect = 6.9e-41 Identity = 92/251 (36.65%), Postives = 148/251 (58.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|