Csor.00g292570 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g292570
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr06: 2113806 .. 2114186 (+)
RNA-Seq Expression	Csor.00g292570
Synteny	Csor.00g292570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCAAAAGGGTATGGCGAGCTACAAAAAGCAACACAGAAACGAAACCAAACAAGTCAAATTAGGATAAAGAAACCACCGAATCGAAGAATTTGGAGCTCTTCCAAGGGCTCACGCAGATGGGTTCGGTGCGACAAGTGGGCACGGAAATGGGCCGTGAGAAATTCAGAACAGGGCAGGGAAATGGACGTGGACGGAGAGGAGTGGTGGGCGGTTGAAATTTACAGCGTTGGGATGAGTTTTGTTTATTTCCTTTTCCCTTTTGGTTTCAGCCATTGGAGAACTTGGAAGCCCCACTGCGACACTAACTACGGATCGTGGAGGACGGGCTTTGAGATCTCTCGCCTCGTTAATGGGTTACCAAGTCTTATGACGTAA

mRNA sequence

ATGGAGGCAAAAGGGTATGGCGAGCTACAAAAAGCAACACAGAAACGAAACCAAACAAGTCAAATTAGGATAAAGAAACCACCGAATCGAAGAATTTGGAGCTCTTCCAAGGGCTCACGCAGATGGGTTCGGTGCGACAAGTGGGCACGGAAATGGGCCGTGAGAAATTCAGAACAGGGCAGGGAAATGGACGTGGACGGAGAGGAGTGGTGGGCGGTTGAAATTTACAGCGTTGGGATGAGTTTTGTTTATTTCCTTTTCCCTTTTGGTTTCAGCCATTGGAGAACTTGGAAGCCCCACTGCGACACTAACTACGGATCGTGGAGGACGGGCTTTGAGATCTCTCGCCTCGTTAATGGGTTACCAAGTCTTATGACGTAA

Coding sequence (CDS)

ATGGAGGCAAAAGGGTATGGCGAGCTACAAAAAGCAACACAGAAACGAAACCAAACAAGTCAAATTAGGATAAAGAAACCACCGAATCGAAGAATTTGGAGCTCTTCCAAGGGCTCACGCAGATGGGTTCGGTGCGACAAGTGGGCACGGAAATGGGCCGTGAGAAATTCAGAACAGGGCAGGGAAATGGACGTGGACGGAGAGGAGTGGTGGGCGGTTGAAATTTACAGCGTTGGGATGAGTTTTGTTTATTTCCTTTTCCCTTTTGGTTTCAGCCATTGGAGAACTTGGAAGCCCCACTGCGACACTAACTACGGATCGTGGAGGACGGGCTTTGAGATCTCTCGCCTCGTTAATGGGTTACCAAGTCTTATGACGTAA

Protein sequence

MEAKGYGELQKATQKRNQTSQIRIKKPPNRRIWSSSKGSRRWVRCDKWARKWAVRNSEQGREMDVDGEEWWAVEIYSVGMSFVYFLFPFGFSHWRTWKPHCDTNYGSWRTGFEISRLVNGLPSLMT

Homology

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BLAST of Csor.00g292570 vs. NCBI nr
Match: KAG6596530.1 (hypothetical protein SDJN03_09710, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271 bits (692), Expect = 8.32e-92
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MEAKGYGELQKATQKRNQTSQIRIKKPPNRRIWSSSKGSRRWVRCDKWARKWAVRNSEQG 60
           MEAKGYGELQKATQKRNQTSQIRIKKPPNRRIWSSSKGSRRWVRCDKWARKWAVRNSEQG
Sbjct: 1   MEAKGYGELQKATQKRNQTSQIRIKKPPNRRIWSSSKGSRRWVRCDKWARKWAVRNSEQG 60

Query: 61  REMDVDGEEWWAVEIYSVGMSFVYFLFPFGFSHWRTWKPHCDTNYGSWRTGFEISRLVNG 120
           REMDVDGEEWWAVEIYSVGMSFVYFLFPFGFSHWRTWKPHCDTNYGSWRTGFEISRLVNG
Sbjct: 61  REMDVDGEEWWAVEIYSVGMSFVYFLFPFGFSHWRTWKPHCDTNYGSWRTGFEISRLVNG 120

Query: 121 LPSLMT 126
           LPSLMT
Sbjct: 121 LPSLMT 126

The following BLAST results are available for this feature:

BLAST of Csor.00g292570 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g292570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596530.1	8.32e-92	100.00	hypothetical protein SDJN03_09710, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g292570 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g292570 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g292570.m01	Csor.00g292570.m01	mRNA