Csor.00g291990 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCACCCACGTCGGCTCTGGCGAAGTATAAGCTGGTCTTTCTCGGAGACCAGTCTGTTGGGAAAACCAGCATCATTACACGCTTCATGTACGACAAATTCGATAATACATATCAGGTAATTCCCTGCTGAATCCTTAATTGTTTAGATCCTTGTTTGTATCACACGTTGCGGCCGGATCGGTTCGGATACTGTTGATCAATGCCTGATCCTGTTGTTTCATCTTTAATTTTGATTCCTCTTGTTTCCATCTGCAGTTTTCTTTGATTATATGCGGTTTTATTTTCTGTTGTGTCTCGTTTTGTCATTGAGGAGGCCGAGAATTCCGTGTTTATGGTTTCAGATCTTTTGGTTTTTTCTTCATAGGCGATCAGCATTTTCCTTCCACACTCTGTATTTATTTCAATATATTAGTCCTTAGTCGAGAGTTCAGTAATCAAGCAGTGTCTTAAGTCTATGATTCTGACCTTGCTGCTTCCGGGTGAATGATGTTCAGAATTTACCGCTGTTGGCTGTCAACACCATTAGTCTTTAGTACTAGTTTATTGGGTACGCCTTGCAAAATTGGATCGACATGAGGAGAAGGGCGGGTTTTCGTTGATGCCTTTCTTTCAGCTAATTTAAATCTAGACCATTATTCTGGAATCATGATCTGACTTCGTGCTAACTTTTGTGGACTGAAAAGCTTTTTGGTCTTTACTTCCCATATTTTAATTTGTTGGATTATTTGAAGAATAGTTGGCTGACTTCGTACAAAAAAAAAAAACCACTGTTACATGTCCTCGCATGCCTAGCATTTTGTCCCTACCTCATGGAGTTGGGTGAGCATTGCCAATAATCCAACTGCTAACTTGATAGAGCAATTGTGTGTTCGTTCCATGTCGTGTACGTTAAAAAATGCTTTGGTTGTCTGACACATTGACGAAGATTTATAAGCATTCTCATGTTCAATGGAAACCAGATGTGTCTTCGGTTATTGTAACTGCATTGACAGCACGACATGATAAGTCCTGTATGGTTTTTGACTATTGGGACATTTTTGTCACTGCTTCTATGGGGAACAGGATATATAGAGGAAGCCGATTAGGAGTGATTAATGTTCAGTGGACAGGTGGATTGTGCTACTGATCAGTTTTCAAGTTGATAAGAACTAAGAAGATGCTAGATTCATCATGTTGTTGGGTTATCTCAGCAATAATTTTCTTAAATATTCTTTTGAAGATGTTCTTTTCCATGCATCAATTGGAGGTTTTTACATTAAGCCTTTCGGGATTATGTTCTTTGTTTAGTCTTGACCAAGTGGAAATGTATCACAATTACATCTAGATCAAATGGGTGCATTATCTTCCATCTCTTGTATTTCCTTTTTGATAATGAATGGTAGATATATAGTTCTATCTCTCTCTCTTCCTTTTTCCTTCTTTTTTTATCTTTTGTTGGATACAAAGTTCTTTCTAAATTTCAGTTTCAAATTTATACCACACATTCACTTCTTGCAATATATAATTATGTGCCATTGTGCAGGCTACAATTGGCATTGATTTTCTCTCAAAAACCATGTATCTGGAAGATCGCACCGTTCGACTGCAGTTGTGGTAAGATAAATTACAAATTTATGGTTGTTCATATATAGATGACTGCTTCTATTGGTTTTACTTATTCACATTACTCTTCTAATTCAATCACATTTTTGTGTTGTATATAAATCATGTGATTTATTTATCCTTGAGAATTGAAGAACTTATGTGATTTATTTGCTGGAGTCCATGGTATAAATGATAAATTTCAACAACGGAAACAAGCAAACAATCCAGTATAGCTATTCCTCCTAGATTTAAACTATTCTCCTTTGAAACTTGAAAATAAATTTAAAGGTGTAGTCCTTGGGGGAGGAAATCCAAAAAGTCTGCATTTGGAATTCCTTTTTGGAGGAAAATTCTAAAAAATGATTAAACTGGTTTGCTGCTCCAGTCTGTAGAGGTGGGGGTGCTCATTTGCAGCAATTAATGCTTTCATAGTATTCCCAATAAAGTTGTTAGAAATTTGAAGATATATATTAAAAAATTCTTTTGGGAGGATCAAATGGAAAGTGTTATTGGATGAAATATGGCCTCTCACCTTCTGCAGAATCAATGTTAATATCGGAAAAAAAACCAAACATAAAATTAATTCTCTTCGTTAAATATGGATGTGGAGGTTTCATAGGGAGGGAGCCCAAGTTTTTTATGGAATGGAATTAATGAAAGTAATATTTGCTTCTCTGAAAAGCTCACTAATTGTTTTTATTCTTCAGATAAAAGTTCTTGGTCTCACATCACGTCATTGATGTATATGGACAAGATTGACAATATGAAATGTACAAAAATAGAGGAGCAAAGCCTCAACAACCCTGGCTAAGGAAGTTATGAAAAAAAAGTCTTTCAATTGGCACAAAGAGAAGAAAACACATGTTAAAAGTAAAATGTTTGTACAAATATGAATAGGGCAATGCCCCAAAAATAATTTGATCAATGAAACGAAAAAAACCTTTAGAAGGAGTCTATTATTTCTTTCCAACCATGAATTCTAAATAAAAGCTCCAATAAAACTCATCTCCAACAAAAACTATTGTCAGAAATGGGTAGTCATTTTATAGTTTCGTGGCTTCTTTTTGGGCCTCTCTCGCTAATCTTCAGAACTACCGTGCTATCTTTCTGAACATGGCCAATTGGAGACCCTTATTTTTTCTTTTAACTCCTAGGCCTGTTCATTTTGTGCCTGCCACTCGAGGATGAAAGGAGATACAGAAAAAGCTGCACGAAGTTAATAAGAAAACTGCAGAATAAAATAACTTCAGACAACTAGAAGGAACTAATTAGTTTCTATAGATAATATCATCTAGAAACTAAGTAACAAGCAATGTTTAATGTATCTTTGCCATCTGTATATTTTCCATCAAATAAAAAATAAAAAAATGTTACAGGTGCGCTACTCAAATTTTTCCTTTGTTTTTTATAGACACATCTTATAAATTAATGTATCAATTTTGACTTCTTTTCACGTATATTTATGATACTTCTCATTCTATTTAATTGGATTGACTAACTTTCATATTTGTCTTTTCCAGAAGAATGGGTTTTGCTGTACATTTATAAATTTTATGTTGCTTTGTTTCTCAGGGACACTGCTGGACAGGAAAGATTCAGAAGTCTAATTCCAAGCTATATCAGGGATTCATCTGTCGCTGTCATTGTTTTTGATGTTGCAAGTATGGAATCTGAAATTTTCTATTGAATGAGAATAATTAAGTAAACCAATTGAAAATGTGTATTCTTCGGTGTTGTGATAAAATATCTTGTATACTCTTGGGGTGGATCTGGGATCTGATATCCAAAGCCTTTTCGGTCCTTAATCTCATATAGTTACTTGATTACATGCTGTGGAGTTAATTCTGTGCCATGATGAGGTCAAGGGAATATTTTGAACTGTTTTTATCCTGTTGTTACTTAGGCCGGCAAACTTTCGTAAACACTTCAAAATGGATTGAGGAGGTGCGCACTGAGAGGGGCAGTGATGTCATTATAGTGCTTGTTGGGAACAAAACGGACCTTGTGGAGAAGAGGTAATAGTTAACCGTGGATTTTTATTTCGTTTGCATGTTCTATCTTTTTAGCTGTTTCAATTCTGAATAATATATGCAAACCTGAATTGGAGTTCTAAGAAAAATATTAATGATATTGAAGTGATATAGAGAGCTTGCAAATCTTTTTGGCTTTTTAGATACCCTAAGCATAGGCCAATTGGTTAAAACATTAAAGGTTTGTTCTAACAGTCAGATGTTCAAATCCTCATCTCCATATTATTCAAACCAAACACTCCTTATGAGCCTATTCAGCAACCAATCTGTAATTAGTTATGTCGGAAGTAAGGGGATGTCTAGAACTTACCATATCGAAAATCAATCCTCGCGCGGAAAGGAAGAAGAGAAATCGGAGCTCCGTACCTAACTTCACTCCCGAACTATTCTTTCACGGTAAACAAGGGTTTGTTCTTGCCTCCATATTGTTCAAACGGTCAGATGTTCAAAAAATAGTTTGTTGTTACCACTCATTGTGCTATCCGATTTATGAATATAGCTTTCAAAATAAATTGAGCTCTAAGTTTCATCTAGTTTGATCTTTCTCTAAAAAAACCATTTAGTTAATATTGAACTTGGACGACGATTAACGTTATAATAGTATATCAGTAGTCTGGGCAATATTGTTTTAAGGCATATCATTATCAGATAATCTTACGTTTTTATTATATGTAATGTGTGGAAAAAGAGTAGAACATGATGTTGTGATCTACCACTGTTCTTGCTCCTATATTTTCTAAGGGAAAAAGGTTTCAATTTAATATTGCGTTTTTTCACATTACTTAGAAGTCTTGTTTGGCATGTTGTTTCACCATTTCCCATATGCTGCATTGGTAGGCAAGTCTCCGTAGAGGAAGGAGAAGCCAAAGCCCGTGAACTAAATGTCATGTTTATCGAAACAAGTGCTAAAGCTGGATTTAATATCAAGGTAAACCATTCATACTCTGATAGCCTGATATTTGTACTGTACCTCCAGATTGAATATATACCAATCATCTGCTATATACTCTAGGGAACTTGACGAAGATGTTTTAGGATTACTTCATTCTTTGACAAAAATTATGTTAAAATCTTCGTACTCGTTTATGGTATTCTAACAGCCATCCCTATAATTTGTGCAGGCACTGTTCCGAAAAATCGCTGCAGCTTTGCCGGGAATGGAAACTCTCTCATCAGCAAAACAAGAAGACATGGTTGATGTTAACCTGAAGTCCTCAGGCAGTGGTGCTGCACAATCCCAGCAGCAGTCGGGTGGATGTGCCTGCTAG ATGGCACCCACGTCGGCTCTGGCGAAGTATAAGCTGGTCTTTCTCGGAGACCAGTCTGTTGGGAAAACCAGCATCATTACACGCTTCATGTACGACAAATTCGATAATACATATCAGGCTACAATTGGCATTGATTTTCTCTCAAAAACCATGTATCTGGAAGATCGCACCGTTCGACTGCAGTTGTGGGACACTGCTGGACAGGAAAGATTCAGAAGTCTAATTCCAAGCTATATCAGGGATTCATCTGTCGCTGTCATTGTTTTTGATGTTGCAAGCCGGCAAACTTTCGTAAACACTTCAAAATGGATTGAGGAGGTGCGCACTGAGAGGGGCAGTGATGTCATTATAGTGCTTGTTGGGAACAAAACGGACCTTGTGGAGAAGAGGCAAGTCTCCGTAGAGGAAGGAGAAGCCAAAGCCCGTGAACTAAATGTCATGTTTATCGAAACAAGTGCTAAAGCTGGATTTAATATCAAGGCACTGTTCCGAAAAATCGCTGCAGCTTTGCCGGGAATGGAAACTCTCTCATCAGCAAAACAAGAAGACATGGTTGATGTTAACCTGAAGTCCTCAGGCAGTGGTGCTGCACAATCCCAGCAGCAGTCGGGTGGATGTGCCTGCTAG ATGGCACCCACGTCGGCTCTGGCGAAGTATAAGCTGGTCTTTCTCGGAGACCAGTCTGTTGGGAAAACCAGCATCATTACACGCTTCATGTACGACAAATTCGATAATACATATCAGGCTACAATTGGCATTGATTTTCTCTCAAAAACCATGTATCTGGAAGATCGCACCGTTCGACTGCAGTTGTGGGACACTGCTGGACAGGAAAGATTCAGAAGTCTAATTCCAAGCTATATCAGGGATTCATCTGTCGCTGTCATTGTTTTTGATGTTGCAAGCCGGCAAACTTTCGTAAACACTTCAAAATGGATTGAGGAGGTGCGCACTGAGAGGGGCAGTGATGTCATTATAGTGCTTGTTGGGAACAAAACGGACCTTGTGGAGAAGAGGCAAGTCTCCGTAGAGGAAGGAGAAGCCAAAGCCCGTGAACTAAATGTCATGTTTATCGAAACAAGTGCTAAAGCTGGATTTAATATCAAGGCACTGTTCCGAAAAATCGCTGCAGCTTTGCCGGGAATGGAAACTCTCTCATCAGCAAAACAAGAAGACATGGTTGATGTTAACCTGAAGTCCTCAGGCAGTGGTGCTGCACAATCCCAGCAGCAGTCGGGTGGATGTGCCTGCTAG MAPTSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQEDMVDVNLKSSGSGAAQSQQQSGGCAC Homology
BLAST of Csor.00g291990 vs. ExPASy Swiss-Prot
Match: O80501 (Ras-related protein RABH1b OS=Arabidopsis thaliana OX=3702 GN=RABH1B PE=1 SV=1) HSP 1 Score: 369.0 bits (946), Expect = 3.5e-101 Identity = 190/208 (91.35%), Postives = 202/208 (97.12%), Query Frame = 0
BLAST of Csor.00g291990 vs. ExPASy Swiss-Prot
Match: Q9LFT9 (Ras-related protein RABH1e OS=Arabidopsis thaliana OX=3702 GN=RABH1E PE=2 SV=1) HSP 1 Score: 347.8 bits (891), Expect = 8.4e-95 Identity = 182/208 (87.50%), Postives = 195/208 (93.75%), Query Frame = 0
BLAST of Csor.00g291990 vs. ExPASy Swiss-Prot
Match: Q9SID8 (Ras-related protein RABH1d OS=Arabidopsis thaliana OX=3702 GN=RABH1D PE=3 SV=1) HSP 1 Score: 330.1 bits (845), Expect = 1.8e-89 Identity = 172/208 (82.69%), Postives = 186/208 (89.42%), Query Frame = 0
BLAST of Csor.00g291990 vs. ExPASy Swiss-Prot
Match: Q9SMR4 (Ras-related protein RABH1c OS=Arabidopsis thaliana OX=3702 GN=RABH1C PE=1 SV=1) HSP 1 Score: 307.4 bits (786), Expect = 1.3e-82 Identity = 166/215 (77.21%), Postives = 187/215 (86.98%), Query Frame = 0
BLAST of Csor.00g291990 vs. ExPASy Swiss-Prot
Match: P20340 (Ras-related protein Rab-6A OS=Homo sapiens OX=9606 GN=RAB6A PE=1 SV=3) HSP 1 Score: 296.6 bits (758), Expect = 2.2e-79 Identity = 147/202 (72.77%), Postives = 174/202 (86.14%), Query Frame = 0
BLAST of Csor.00g291990 vs. NCBI nr
Match: XP_022932970.1 (ras-related protein RABH1b-like [Cucurbita moschata] >KAG6571756.1 Ras-related protein RABH1b, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 395 bits (1014), Expect = 3.25e-138 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0
BLAST of Csor.00g291990 vs. NCBI nr
Match: XP_023542507.1 (ras-related protein RABH1b-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 394 bits (1013), Expect = 4.62e-138 Identity = 207/208 (99.52%), Postives = 208/208 (100.00%), Query Frame = 0
BLAST of Csor.00g291990 vs. NCBI nr
Match: XP_022973260.1 (ras-related protein RABH1b-like [Cucurbita maxima] >XP_022973261.1 ras-related protein RABH1b-like [Cucurbita maxima]) HSP 1 Score: 392 bits (1008), Expect = 2.67e-137 Identity = 206/208 (99.04%), Postives = 207/208 (99.52%), Query Frame = 0
BLAST of Csor.00g291990 vs. NCBI nr
Match: XP_022958673.1 (ras-related protein RABH1b [Cucurbita moschata] >XP_023533385.1 ras-related protein RABH1b [Cucurbita pepo subsp. pepo] >KAG6606223.1 Ras-related protein RABH1b, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 390 bits (1001), Expect = 3.12e-136 Identity = 205/208 (98.56%), Postives = 206/208 (99.04%), Query Frame = 0
BLAST of Csor.00g291990 vs. NCBI nr
Match: XP_022996115.1 (ras-related protein RABH1b [Cucurbita maxima]) HSP 1 Score: 389 bits (998), Expect = 8.94e-136 Identity = 204/208 (98.08%), Postives = 206/208 (99.04%), Query Frame = 0
BLAST of Csor.00g291990 vs. ExPASy TrEMBL
Match: A0A6J1F3M2 (ras-related protein RABH1b-like OS=Cucurbita moschata OX=3662 GN=LOC111439590 PE=4 SV=1) HSP 1 Score: 395 bits (1014), Expect = 1.57e-138 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0
BLAST of Csor.00g291990 vs. ExPASy TrEMBL
Match: A0A6J1IAX1 (ras-related protein RABH1b-like OS=Cucurbita maxima OX=3661 GN=LOC111471818 PE=4 SV=1) HSP 1 Score: 392 bits (1008), Expect = 1.29e-137 Identity = 206/208 (99.04%), Postives = 207/208 (99.52%), Query Frame = 0
BLAST of Csor.00g291990 vs. ExPASy TrEMBL
Match: A0A6J1H3Q8 (ras-related protein RABH1b OS=Cucurbita moschata OX=3662 GN=LOC111459827 PE=4 SV=1) HSP 1 Score: 390 bits (1001), Expect = 1.51e-136 Identity = 205/208 (98.56%), Postives = 206/208 (99.04%), Query Frame = 0
BLAST of Csor.00g291990 vs. ExPASy TrEMBL
Match: A0A6J1K5U1 (ras-related protein RABH1b OS=Cucurbita maxima OX=3661 GN=LOC111491433 PE=4 SV=1) HSP 1 Score: 389 bits (998), Expect = 4.33e-136 Identity = 204/208 (98.08%), Postives = 206/208 (99.04%), Query Frame = 0
BLAST of Csor.00g291990 vs. ExPASy TrEMBL
Match: A0A6J1DZL5 (ras-related protein RABH1b OS=Momordica charantia OX=3673 GN=LOC111026075 PE=4 SV=1) HSP 1 Score: 386 bits (992), Expect = 3.56e-135 Identity = 202/208 (97.12%), Postives = 205/208 (98.56%), Query Frame = 0
BLAST of Csor.00g291990 vs. TAIR 10
Match: AT2G44610.1 (Ras-related small GTP-binding family protein ) HSP 1 Score: 369.0 bits (946), Expect = 2.5e-102 Identity = 190/208 (91.35%), Postives = 202/208 (97.12%), Query Frame = 0
BLAST of Csor.00g291990 vs. TAIR 10
Match: AT5G10260.1 (RAB GTPase homolog H1E ) HSP 1 Score: 347.8 bits (891), Expect = 5.9e-96 Identity = 182/208 (87.50%), Postives = 195/208 (93.75%), Query Frame = 0
BLAST of Csor.00g291990 vs. TAIR 10
Match: AT2G22290.1 (RAB GTPase homolog H1D ) HSP 1 Score: 330.1 bits (845), Expect = 1.3e-90 Identity = 172/208 (82.69%), Postives = 186/208 (89.42%), Query Frame = 0
BLAST of Csor.00g291990 vs. TAIR 10
Match: AT4G39890.1 (RAB GTPase homolog H1C ) HSP 1 Score: 307.4 bits (786), Expect = 8.9e-84 Identity = 166/215 (77.21%), Postives = 187/215 (86.98%), Query Frame = 0
BLAST of Csor.00g291990 vs. TAIR 10
Match: AT5G64990.1 (RAB GTPase homolog H1A ) HSP 1 Score: 284.3 bits (726), Expect = 8.1e-77 Identity = 149/199 (74.87%), Postives = 165/199 (82.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|