Csor.00g290540 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g290540
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionAuxin response factor
LocationCsor_Chr04: 17010070 .. 17015800 (-)
RNA-Seq ExpressionCsor.00g290540
SyntenyCsor.00g290540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATCGATTGAGAGGTATGAGTTTCCGGCAGGGTTCTTGTCCTGTCCATTAGGGTTTTACTATTCTTTTTTGTTTTTGATTTTTTTGTGTTTTGAGACCTTTTTTAGTGATTGGGTAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGTATGATATGATTTTCCCTGTTTTCTTTCAATTTGGGACGCTTCAAATCCTGTTTTTGAGTTATTATTATGTGCTTCTTGTTTTTCTCTCCCCTTTATTAAATGCTATGGTTCCCTCATCTCCCGCCATTAATTTTGATCACTGCTGTGCTGAGCTTTAATTATGGCGTTGTAATAATGATGATGATTATAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTTCTGGGACTCGGGTTGTCTACTTCCCTCAGGGGCACAGCGAACAGGTTCCATGTTTTTTTTTTTTTTTTTTTTGTTCTTTTTTCCTTTTTCTTTTTAGTTCGAAAATGAAAATTTCCATTATTGCGGCTCCCCATTTGATATGTCAACTTAGTGCAGTAGTTTAGTTAGTTGTCATTGGATAAGCTTGTGGAGGAATTGAAATTTGAAAGGACTTTTCTGTTGATTTCTTGTGTGTTTGTAGGTTGCTGCCACAACCAACAAAGAAGTTGATGGGCATATCCCGAATTACCCGAACCTGCCTCCCCAGTTGATATGTCAACTTCACAACGTTACGATGCATGTGGGTTCTCTATATTTCATGTAATTTGAGTGTATTTAGCCTTTTCCTTTCACAATTAATGTTTTTAATGCGTAATTCTTCCATTAATGTAACGGCTCAAGCCCACCGCTAGCAGATATTGACCTCTTTGGACTTCCCCTCAAGATTTTTAAAACGCGTTTGGTTAGGGAGAGGTTTCCATTCGTTCTTCTATCCAACTGACGTGGGATCTCACAATTAATCACTCATTAACCATAAATGATGAAATTAGATTAATCAAGGTGCGAGAACTCTAAAACAGGATTTGTTTGTATGTGTGACATTTCAGGCAGATGTGGAAACGGATGAAGTATACGCTCAAATGACATTACAGCCGCTGACTGCAGTAAAATATCTTTACAACTGTATTTCTCTTTCAGTTCTTGCTTCATTTGTTAATTCCTTTGCTCAAATTCTTCATACATACAGCAAGAGCAAAAGGATACATTTCTACCTATGGAATTGGGGATTCCAAGTAGACAGCCAACAAATTACTTTTGCAAGACGTTGACTGCAAGTGATACGAGCACTCATGGAGGATTCTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGTACGTACATATATTCTGTTATATGATTCTGTTGGATATGATGGATGACTTTTCCCATCTTTCTTTGGTATGGCCCTGCAGGACTTCTCACAGCAGCCACCGGCACAAGAGCTGATTGCACGGGATCTTCATGATGTTGAATGGAAGTTTAGGCATATTTTTCGAGGCAAGTCCCCTTATGTTCTGTCCATTTGTGGAAATAAGTGCCAAAGTTTCTCTGTTGAAGGTTTTTAAGTTATCTTCTACCTTTTCTTTGATCTTAGTTCAACCAATTTATTTGTAGTGTGCACTAAGCATTCAGTTTTAGTTGCCATTTGAAATGAAGCTGTCAAGGAACTTATTAATCTATCATTTTTGCTTTTTCTTCGAAGTAATCGTGATATCAAGTTCTTCAAACGTAAGACACTTTGTTTTGCAAATAAAATTCACTTCCAAGAGAGGTTGGTTCGTATTAGAGTATAAACATTGAATTACATAACGGGTAGAAACATACGAAGGACCCCCTGGCCCTGAAAATGCTCTCACCAACTCTTTCAACGTGAAGCCTCCATTCGCCATTTCATATCTTTGGTTTTTGAGTTCAAGCGTAACATTATTAGTTAGGAGGTTATGTATGTATGCTCACCTTCTGTTTTTGTCAACCAGTATTCTGGTTAGTTTCTTTTGTCTGAGTCTATTACTTCGAGTTTTATTTGGTGCATCTTTAGCGTCATGGAGATTAGGAGTTGTGTTCGTAATATTTATTTCTGTAATTGGTCTGAACAAAGATTTTTTTTTTTTTTTGTTGAATATATGAAAAACAAGGAAGTGATACCTTTGTCGTCCACCTTCTTCAATGGTTTGAGTGCTATTTGGCAGAAATTTTGCAATATCCAATGTATTCACACTTCTTTAAATAGGACAGAGGTGCTTCTGGTACATTTCGTTTAATATAGATCCTTCCATGGTTGGTGCTTTAATTGTGTGGTTTGGCCTCCTTCCGGTGGTAGGAAGATGTTACGAGTTCCTATCAGTCTGGACAAAAAAGTTGCCTTGTCTTATGGGAAAGGTTAAGGGATTTTCTAAAGAAATGAGGAGAGCTGGAACAGCCCAAGCACCGTTATCGTCCTCTTTAAGCTTTCTTTCTAGACTTTCCCTGAAGGTTTTAAAACGCGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGCTTCGTTCTCCTTTCCAACTGATGTGGGATCTCACAATCCATCCCCCTTGGGGGGCCAGCGTATTCGCTAGCACACTGCCTGGTGCATAGCTCTGATACCATTTGTAACAACCCAAGTCCACCTCTAGAAACTGTTGTCCTCTTTGGGCTTCTCTTGTAGGTTTTAAAACGCGTCTATTAGGGAGAGATTTCCACACCCTTATAAGGAATGATTCGTTCCTCTCTCCAACCAACGTGGAATCTCACAAAAGCATACAAGAATTTTGAAAGGACTTTTGCTAGATCATCTTTTTGGGTAATAAAAGCTTAAGAAGTGATGAATTTGAATTTTAATGAAATTTTTGTGGTTTTCGGGCTGTTTGTTCCTAAGTCTTGGTAGGAAATTCAAAAAGCTCTAGAAGACTGTTCTCTCTCTAGGATTTTAATCAATCCATTCATGACTGATAAGGCTTTGTTGAAATTTGTTGAATAATTCCTTAAAAAAAATTTGAAGGTAAATGAGGGCTTTTTGGAGAATTATATTTGAAGTTGAAAATTGATGTTATGACGAGCATTTTCATCTGGAGTTCATTGAAGGTTATGAAGAATGGATTTCTTTAAAAAAATTACCTTTGTCATACTGGAAAAGAAGCACTTTTGAAGCCATTGGAGAGCCCTTTGGAGGCCTTGTTAACGTTTCTTCCCAAACCGTTAATTTACTAGATTGTTCAAAAGCTCGTATCGATTTTGAGTAAAATATTTGTGGTTTTATCCCAAAAACAATCGAGATAAAAGATAGACGGGGAAAGATGTTCTCATATTCTGATTGCTTGCCTTTTGTAAAGGTTGCTTGGGGTTTCTTATATTGCACTATCATTTCTCTTCATGGAAAGTCTGTTTTTCAACTTAAAAATCGATTCGGGAACTGTAAACTACATCAGCAGCTGACATGGCTTATTATCTTTGTTGTCACAGGACAGCCAAAACGACATCTTCTTACAACTGGTTGGAGTGTGTTTGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTACTTTTTATATGGTAACTACTCCATTTCCGCCTTGCGTTTTCATTCTATGTGTCCTATTTCAGAGTTCGTAATTTGAACACCCTGAATCACTTATCTAGGAACGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACAAGACCACAAACTGCGATGCCCTCCTCTGTTTTATCAAGTGATAGCATGCACATTGGACTCCTTGCGGCTGCTGCTCATGCTGCCGCAACCAATAGCTGTTTCACAGTTTTCTACAACCCCAGGTTTTGAAATATTCTTTTATTTTACTACTGTTATAGCTTTTTTATAATTTAATTTTTGACCCTTCTTAAAACGTTTTCTTCTGTAAAAAATGATTACAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGGATGCGTTTTCGGATGCTTTTTGAGACTGAAGAGTCGAGCGTTCGAAGGTATGATAAGTTTAAATAGTTTATTATAATCCGTTTGATTTAAGAACATTCTTGTATACTTCCCTCTTCAGCACTTCCATGTTGAAATTCAAACTCGATGTAGTGGTTCTCTTCAAGTTCTACCGAGTGATAATGCTAAAAATTACTTCTCTCACGATGTTAGTTCTTATTTAAGTGAACATTGAATCCCTATCAAGCCTTAGTCTTCCAGATGCATATTCCATGTATCTTTAGGTTGGTGTATCGACACCTTAATTCTTAAAAAATTGCATGCCCTCCTCGGTTTGCAAGGATGAGGTACCGTATCGTATCGTACTTCGTCTCAAACAACCTTCATTTTCTCTTACAACCAATATATTTAGTTGTACTTGCTTTGTTCGCTGTGTTCGCTGTCGACCCACTAAACTAGATCCAAAGTCTTTAAAATATATGTTCCAAGGTTATTCTCATGTTCAAAAAGGGTATCAGTGTTATAGTTCTAGTCTCGATCGATATTTTTTCTCTCTTGATGCCACTTCTTTGAAGATTCTTCTTTATTTTCTCCACCTTTGAGTAAGAGTCTCGTCGAGCATAAAAAAGAAGATTTTATTATTTACGTTACTCTCTTCTTGTGAGAGCCTTCTAATGATCCACCTCCCACCTCAATCTGTACCCGTTTTTACGCTCCTACCTATCACTCAGATTTATCCTAGACAACCAGCTCCTTTAATTATGTGACCTATGCCAGACACTTTTTCGATCTTCCTATTGCTCTTTGTAAAGGTAAACATCAGTACACTTATCCTATTTCCTCTTTTGTTTGATATAACCTTTTGCCCTCTTCTTCCTGTTCTTTCGTTAGGTCTCTATAGTCTATATTTGTTCTAAGACTGTTCATGAGGTTTTGTTTCATCTTGGTTGCCTTGTTGGAGGAGATGACTACCTTAGATTACAACTATACCTTGTGACTTAGTTTATCTTCCAATAGAAAAGAAGCGTATTGTTGGCGCAATCAAAGTCGATGCAGGTGGATCTGTAGCCTGGTTGAAAGCTCCTTTTAGTGTTAAAGGCTGCACACGAACTTATGGAGTTGACTATTCTGATACTTTTTCTCTGGATACTAAATTGGCTTTTGTTAGGTTATTCGTTTAATTTGCATCTATTCATCACTGACCCTTGCATGAGCTTGACATTAAAAATGACTTTTTTCATGGTGATCTTCTAGAAGAGATGTATATGGAGCAACCTCTAGGTTTGTTGCTCGAAAGGACAGGTATGTCGTCTTCGTAAATCCTTATTTTGATTAAAGAATTGGCCACAAGAATGGTTTGGAAATTTAGTGATGAAAAACTTTGGAATGAGGAAAAGCAAGATCATTTTGTGGTGTCTTCCGGCTGGTTCGTCCATCATAACTAAGTTTCACTCTGATCAGTTGCCGATTTGCAAAAGAATTCTCGGACTTCTAGTAGCCGTAATTTTGGATAAACCTTCACGATTTCCAGGATTCGCAAGGTTCTGAGATCCAGCCCATCGACAGCTGCTCTTAACCCACCTGCTTCCAAAACAATTTCCCCATTTAAGGCCCATTCCAATCACATGCTTCAATCCCACTTGGCCCTCTTGGACAAAAGCGTTAGTCCAGACAAAACGATCGAGCTTTAA

mRNA sequence

ATGTTATCGATTGAGAGTGATTGGGTAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTTCTGGGACTCGGGTTGTCTACTTCCCTCAGGGGCACAGCGAACAGGAGGTTATGTATGTATGCTCACCTTCTGTTTTTGTCAACCAGTATTCTGAAAAGAAGCGTATTGTTGGCGCAATCAAAGTCGATGCAGGTGGATCTGTAGCCTGGTTGAAAGCTCCTTTTAGTGTTAAAGGCTGCACACGAACTTATGGAGTTGACTATTCTGATACTTTTTCTCTGGATACTAAATTGGCTTTTGTTAGAAGAGATGTATATGGAGCAACCTCTAGGTTTGTTGCTCGAAAGGACAGGATTCGCAAGGTTCTGAGATCCAGCCCATCGACAGCTGCTCTTAACCCACCTGCTTCCAAAACAATTTCCCCATTTAAGGCCCATTCCAATCACATGCTTCAATCCCACTTGGCCCTCTTGGACAAAAGCGTTAGTCCAGACAAAACGATCGAGCTTTAA

Coding sequence (CDS)

ATGTTATCGATTGAGAGTGATTGGGTAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTTCTGGGACTCGGGTTGTCTACTTCCCTCAGGGGCACAGCGAACAGGAGGTTATGTATGTATGCTCACCTTCTGTTTTTGTCAACCAGTATTCTGAAAAGAAGCGTATTGTTGGCGCAATCAAAGTCGATGCAGGTGGATCTGTAGCCTGGTTGAAAGCTCCTTTTAGTGTTAAAGGCTGCACACGAACTTATGGAGTTGACTATTCTGATACTTTTTCTCTGGATACTAAATTGGCTTTTGTTAGAAGAGATGTATATGGAGCAACCTCTAGGTTTGTTGCTCGAAAGGACAGGATTCGCAAGGTTCTGAGATCCAGCCCATCGACAGCTGCTCTTAACCCACCTGCTTCCAAAACAATTTCCCCATTTAAGGCCCATTCCAATCACATGCTTCAATCCCACTTGGCCCTCTTGGACAAAAGCGTTAGTCCAGACAAAACGATCGAGCTTTAA

Protein sequence

MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQEVMYVCSPSVFVNQYSEKKRIVGAIKVDAGGSVAWLKAPFSVKGCTRTYGVDYSDTFSLDTKLAFVRRDVYGATSRFVARKDRIRKVLRSSPSTAALNPPASKTISPFKAHSNHMLQSHLALLDKSVSPDKTIEL
Homology
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BLAST of Csor.00g290540 vs. ExPASy Swiss-Prot
Match: Q9FGV1 (Auxin response factor 8 OS=Arabidopsis thaliana OX=3702 GN=ARF8 PE=1 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 5.0e-20
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 0 

Query: 13 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          MKLSTSG GQQ HEG  +KCLNSELWHACAGPLVSLP+SG+RVVYFPQGHSEQ
Sbjct: 1  MKLSTSGLGQQGHEG--EKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQ 51

[Close]
BLAST of Csor.00g290540 vs. ExPASy Swiss-Prot
Match: Q9ZTX8 (Auxin response factor 6 OS=Arabidopsis thaliana OX=3702 GN=ARF6 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0 

Query: 13 MKLSTSGFGQQDHE-GGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          M+LS++GF  Q HE  GEK+ LNSELWHACAGPLVSLP  G+RVVYFPQGHSEQ
Sbjct: 1  MRLSSAGFNPQPHEVTGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQ 54

[Close]
BLAST of Csor.00g290540 vs. ExPASy Swiss-Prot
Match: A2X1A1 (Auxin response factor 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARF6 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-14
Identity = 40/59 (67.80%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 13 MKLSTSGFGQQDHE------GGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          MKLS S  G  D          E+KCLNSELWHACAGPLVSLP  G+RVVYFPQGHSEQ
Sbjct: 1  MKLSPSAGGVSDQPPSPPEVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQ 59

[Close]
BLAST of Csor.00g290540 vs. ExPASy Swiss-Prot
Match: Q6H6V4 (Auxin response factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF6 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-14
Identity = 40/59 (67.80%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 13 MKLSTSGFGQQDHE------GGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          MKLS S  G  D          E+KCLNSELWHACAGPLVSLP  G+RVVYFPQGHSEQ
Sbjct: 1  MKLSPSAGGVSDQPPSPPEVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQ 59

[Close]
BLAST of Csor.00g290540 vs. ExPASy Swiss-Prot
Match: Q258Y5 (Auxin response factor 12 OS=Oryza sativa subsp. indica OX=39946 GN=ARF12 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-14
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 29 EKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          EKKCLNSELWHACAGPLV LPT GTRVVYFPQGHSEQ
Sbjct: 24 EKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQ 60

[Close]
BLAST of Csor.00g290540 vs. NCBI nr
Match: KAG6601996.1 (Auxin response factor 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 405 bits (1042), Expect = 9.47e-143
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0 

Query: 1   MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60
           MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ
Sbjct: 1   MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60

Query: 61  GHSEQEVMYVCSPSVFVNQYSEKKRIVGAIKVDAGGSVAWLKAPFSVKGCTRTYGVDYSD 120
           GHSEQEVMYVCSPSVFVNQYSEKKRIVGAIKVDAGGSVAWLKAPFSVKGCTRTYGVDYSD
Sbjct: 61  GHSEQEVMYVCSPSVFVNQYSEKKRIVGAIKVDAGGSVAWLKAPFSVKGCTRTYGVDYSD 120

Query: 121 TFSLDTKLAFVRRDVYGATSRFVARKDRIRKVLRSSPSTAALNPPASKTISPFKAHSNHM 180
           TFSLDTKLAFVRRDVYGATSRFVARKDRIRKVLRSSPSTAALNPPASKTISPFKAHSNHM
Sbjct: 121 TFSLDTKLAFVRRDVYGATSRFVARKDRIRKVLRSSPSTAALNPPASKTISPFKAHSNHM 180

Query: 181 LQSHLALLDKSVSPDKTIEL 200
           LQSHLALLDKSVSPDKTIEL
Sbjct: 181 LQSHLALLDKSVSPDKTIEL 200

[Close]
BLAST of Csor.00g290540 vs. NCBI nr
Match: XP_023531911.1 (auxin response factor 8-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142 bits (358), Expect = 3.45e-35
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60
          MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ
Sbjct: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60

Query: 61 GHSEQ 65
          GHSEQ
Sbjct: 61 GHSEQ 65

[Close]
BLAST of Csor.00g290540 vs. NCBI nr
Match: XP_022957396.1 (auxin response factor 8-like [Cucurbita moschata])

HSP 1 Score: 142 bits (358), Expect = 3.45e-35
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60
          MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ
Sbjct: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60

Query: 61 GHSEQ 65
          GHSEQ
Sbjct: 61 GHSEQ 65

[Close]
BLAST of Csor.00g290540 vs. NCBI nr
Match: XP_022989950.1 (auxin response factor 8-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 142 bits (358), Expect = 3.45e-35
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60
          MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ
Sbjct: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60

Query: 61 GHSEQ 65
          GHSEQ
Sbjct: 61 GHSEQ 65

[Close]
BLAST of Csor.00g290540 vs. NCBI nr
Match: KAG7032695.1 (Auxin response factor 8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142 bits (358), Expect = 3.52e-35
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60
          MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ
Sbjct: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60

Query: 61 GHSEQ 65
          GHSEQ
Sbjct: 61 GHSEQ 65

[Close]
BLAST of Csor.00g290540 vs. ExPASy TrEMBL
Match: A0A6J1JNS1 (Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111486985 PE=3 SV=1)

HSP 1 Score: 142 bits (358), Expect = 1.67e-35
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60
          MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ
Sbjct: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60

Query: 61 GHSEQ 65
          GHSEQ
Sbjct: 61 GHSEQ 65

[Close]
BLAST of Csor.00g290540 vs. ExPASy TrEMBL
Match: A0A6J1GZ34 (Auxin response factor OS=Cucurbita moschata OX=3662 GN=LOC111458805 PE=3 SV=1)

HSP 1 Score: 142 bits (358), Expect = 1.67e-35
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60
          MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ
Sbjct: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60

Query: 61 GHSEQ 65
          GHSEQ
Sbjct: 61 GHSEQ 65

[Close]
BLAST of Csor.00g290540 vs. ExPASy TrEMBL
Match: A0A6J1JQS1 (Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111486985 PE=3 SV=1)

HSP 1 Score: 134 bits (336), Expect = 1.54e-32
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 6  SDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 65
          SDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ
Sbjct: 37 SDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 96

[Close]
BLAST of Csor.00g290540 vs. ExPASy TrEMBL
Match: A0A5D3C9K7 (Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold871G00080 PE=3 SV=1)

HSP 1 Score: 122 bits (307), Expect = 1.20e-28
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 10 KLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 65
          KLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPT+GTRVVYFPQGHSEQ
Sbjct: 41 KLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 96

[Close]
BLAST of Csor.00g290540 vs. ExPASy TrEMBL
Match: A0A445FCX3 (Auxin response factor 8 OS=Glycine soja OX=3848 GN=D0Y65_050624 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 1.40e-27
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 13 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 65
          MKLSTSG GQQ HEGGEKKCLNSELWHAC GPLVSLPT+GTRVVYFPQGH+EQ
Sbjct: 1  MKLSTSGLGQQGHEGGEKKCLNSELWHACTGPLVSLPTAGTRVVYFPQGHNEQ 53

[Close]
BLAST of Csor.00g290540 vs. TAIR 10
Match: AT5G37020.1 (auxin response factor 8 )

HSP 1 Score: 99.4 bits (246), Expect = 3.5e-21
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 0 

Query: 13 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          MKLSTSG GQQ HEG  +KCLNSELWHACAGPLVSLP+SG+RVVYFPQGHSEQ
Sbjct: 1  MKLSTSGLGQQGHEG--EKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQ 51

[Close]
BLAST of Csor.00g290540 vs. TAIR 10
Match: AT5G37020.2 (auxin response factor 8 )

HSP 1 Score: 99.4 bits (246), Expect = 3.5e-21
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 0 

Query: 13 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          MKLSTSG GQQ HEG  +KCLNSELWHACAGPLVSLP+SG+RVVYFPQGHSEQ
Sbjct: 1  MKLSTSGLGQQGHEG--EKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQ 51

[Close]
BLAST of Csor.00g290540 vs. TAIR 10
Match: AT1G30330.1 (auxin response factor 6 )

HSP 1 Score: 89.0 bits (219), Expect = 4.8e-18
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 13 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          M+LS++GF  Q HE GEK+ LNSELWHACAGPLVSLP  G+RVVYFPQGHSEQ
Sbjct: 1  MRLSSAGFNPQPHE-GEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQ 52

[Close]
BLAST of Csor.00g290540 vs. TAIR 10
Match: AT1G30330.2 (auxin response factor 6 )

HSP 1 Score: 88.2 bits (217), Expect = 8.2e-18
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0 

Query: 13 MKLSTSGFGQQDHE-GGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          M+LS++GF  Q HE  GEK+ LNSELWHACAGPLVSLP  G+RVVYFPQGHSEQ
Sbjct: 1  MRLSSAGFNPQPHEVTGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQ 54

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BLAST of Csor.00g290540 vs. TAIR 10
Match: AT1G19220.1 (auxin response factor 19 )

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 0 

Query: 13 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQEVMYVCS 72
          MK  ++GF    +E GEKK +NS+LWHACAGPLVSLP  G+ VVYFPQGHSEQ    +  
Sbjct: 1  MKAPSNGFLPSSNE-GEKKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQK 60

Query: 73 PSVFVNQY 81
           + F+  Y
Sbjct: 61 QTDFIPNY 67

The following BLAST results are available for this feature:
BLAST of Csor.00g290540 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FGV15.0e-2086.79Auxin response factor 8 OS=Arabidopsis thaliana OX=3702 GN=ARF8 PE=1 SV=2[more]
Q9ZTX81.1e-1675.93Auxin response factor 6 OS=Arabidopsis thaliana OX=3702 GN=ARF6 PE=1 SV=2[more]
A2X1A11.8e-1467.80Auxin response factor 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARF6 PE=3 SV=1[more]
Q6H6V41.8e-1467.80Auxin response factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF6 PE=1 SV... [more]
Q258Y51.8e-1494.59Auxin response factor 12 OS=Oryza sativa subsp. indica OX=39946 GN=ARF12 PE=3 SV... [more]
BLAST of Csor.00g290540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6601996.19.47e-143100.00Auxin response factor 8, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023531911.13.45e-35100.00auxin response factor 8-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022957396.13.45e-35100.00auxin response factor 8-like [Cucurbita moschata][more]
XP_022989950.13.45e-35100.00auxin response factor 8-like isoform X2 [Cucurbita maxima][more]
KAG7032695.13.52e-35100.00Auxin response factor 8 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Csor.00g290540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JNS11.67e-35100.00Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111486985 PE=3 SV=1[more]
A0A6J1GZ341.67e-35100.00Auxin response factor OS=Cucurbita moschata OX=3662 GN=LOC111458805 PE=3 SV=1[more]
A0A6J1JQS11.54e-32100.00Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111486985 PE=3 SV=1[more]
A0A5D3C9K71.20e-2898.21Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87... [more]
A0A445FCX31.40e-2790.57Auxin response factor 8 OS=Glycine soja OX=3848 GN=D0Y65_050624 PE=4 SV=1[more]
BLAST of Csor.00g290540 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G37020.13.5e-2186.79auxin response factor 8 [more]
AT5G37020.23.5e-2186.79auxin response factor 8 [more]
AT1G30330.14.8e-1877.36auxin response factor 6 [more]
AT1G30330.28.2e-1875.93auxin response factor 6 [more]
AT1G19220.11.1e-1455.88auxin response factor 19 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044835Auxin response factorPANTHERPTHR31384AUXIN RESPONSE FACTOR 4-RELATEDcoord: 13..65
NoneNo IPR availablePANTHERPTHR31384:SF85AUXIN RESPONSE FACTORcoord: 13..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g290540.m01Csor.00g290540.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009725 response to hormone
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding