Csor.00g290540 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g290540
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Auxin response factor
Location	Csor_Chr04: 17010070 .. 17015800 (-)
RNA-Seq Expression	Csor.00g290540
Synteny	Csor.00g290540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATCGATTGAGAGGTATGAGTTTCCGGCAGGGTTCTTGTCCTGTCCATTAGGGTTTTACTATTCTTTTTTGTTTTTGATTTTTTTGTGTTTTGAGACCTTTTTTAGTGATTGGGTAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGTATGATATGATTTTCCCTGTTTTCTTTCAATTTGGGACGCTTCAAATCCTGTTTTTGAGTTATTATTATGTGCTTCTTGTTTTTCTCTCCCCTTTATTAAATGCTATGGTTCCCTCATCTCCCGCCATTAATTTTGATCACTGCTGTGCTGAGCTTTAATTATGGCGTTGTAATAATGATGATGATTATAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTTCTGGGACTCGGGTTGTCTACTTCCCTCAGGGGCACAGCGAACAGGTTCCATGTTTTTTTTTTTTTTTTTTTTGTTCTTTTTTCCTTTTTCTTTTTAGTTCGAAAATGAAAATTTCCATTATTGCGGCTCCCCATTTGATATGTCAACTTAGTGCAGTAGTTTAGTTAGTTGTCATTGGATAAGCTTGTGGAGGAATTGAAATTTGAAAGGACTTTTCTGTTGATTTCTTGTGTGTTTGTAGGTTGCTGCCACAACCAACAAAGAAGTTGATGGGCATATCCCGAATTACCCGAACCTGCCTCCCCAGTTGATATGTCAACTTCACAACGTTACGATGCATGTGGGTTCTCTATATTTCATGTAATTTGAGTGTATTTAGCCTTTTCCTTTCACAATTAATGTTTTTAATGCGTAATTCTTCCATTAATGTAACGGCTCAAGCCCACCGCTAGCAGATATTGACCTCTTTGGACTTCCCCTCAAGATTTTTAAAACGCGTTTGGTTAGGGAGAGGTTTCCATTCGTTCTTCTATCCAACTGACGTGGGATCTCACAATTAATCACTCATTAACCATAAATGATGAAATTAGATTAATCAAGGTGCGAGAACTCTAAAACAGGATTTGTTTGTATGTGTGACATTTCAGGCAGATGTGGAAACGGATGAAGTATACGCTCAAATGACATTACAGCCGCTGACTGCAGTAAAATATCTTTACAACTGTATTTCTCTTTCAGTTCTTGCTTCATTTGTTAATTCCTTTGCTCAAATTCTTCATACATACAGCAAGAGCAAAAGGATACATTTCTACCTATGGAATTGGGGATTCCAAGTAGACAGCCAACAAATTACTTTTGCAAGACGTTGACTGCAAGTGATACGAGCACTCATGGAGGATTCTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGTACGTACATATATTCTGTTATATGATTCTGTTGGATATGATGGATGACTTTTCCCATCTTTCTTTGGTATGGCCCTGCAGGACTTCTCACAGCAGCCACCGGCACAAGAGCTGATTGCACGGGATCTTCATGATGTTGAATGGAAGTTTAGGCATATTTTTCGAGGCAAGTCCCCTTATGTTCTGTCCATTTGTGGAAATAAGTGCCAAAGTTTCTCTGTTGAAGGTTTTTAAGTTATCTTCTACCTTTTCTTTGATCTTAGTTCAACCAATTTATTTGTAGTGTGCACTAAGCATTCAGTTTTAGTTGCCATTTGAAATGAAGCTGTCAAGGAACTTATTAATCTATCATTTTTGCTTTTTCTTCGAAGTAATCGTGATATCAAGTTCTTCAAACGTAAGACACTTTGTTTTGCAAATAAAATTCACTTCCAAGAGAGGTTGGTTCGTATTAGAGTATAAACATTGAATTACATAACGGGTAGAAACATACGAAGGACCCCCTGGCCCTGAAAATGCTCTCACCAACTCTTTCAACGTGAAGCCTCCATTCGCCATTTCATATCTTTGGTTTTTGAGTTCAAGCGTAACATTATTAGTTAGGAGGTTATGTATGTATGCTCACCTTCTGTTTTTGTCAACCAGTATTCTGGTTAGTTTCTTTTGTCTGAGTCTATTACTTCGAGTTTTATTTGGTGCATCTTTAGCGTCATGGAGATTAGGAGTTGTGTTCGTAATATTTATTTCTGTAATTGGTCTGAACAAAGATTTTTTTTTTTTTTTGTTGAATATATGAAAAACAAGGAAGTGATACCTTTGTCGTCCACCTTCTTCAATGGTTTGAGTGCTATTTGGCAGAAATTTTGCAATATCCAATGTATTCACACTTCTTTAAATAGGACAGAGGTGCTTCTGGTACATTTCGTTTAATATAGATCCTTCCATGGTTGGTGCTTTAATTGTGTGGTTTGGCCTCCTTCCGGTGGTAGGAAGATGTTACGAGTTCCTATCAGTCTGGACAAAAAAGTTGCCTTGTCTTATGGGAAAGGTTAAGGGATTTTCTAAAGAAATGAGGAGAGCTGGAACAGCCCAAGCACCGTTATCGTCCTCTTTAAGCTTTCTTTCTAGACTTTCCCTGAAGGTTTTAAAACGCGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGCTTCGTTCTCCTTTCCAACTGATGTGGGATCTCACAATCCATCCCCCTTGGGGGGCCAGCGTATTCGCTAGCACACTGCCTGGTGCATAGCTCTGATACCATTTGTAACAACCCAAGTCCACCTCTAGAAACTGTTGTCCTCTTTGGGCTTCTCTTGTAGGTTTTAAAACGCGTCTATTAGGGAGAGATTTCCACACCCTTATAAGGAATGATTCGTTCCTCTCTCCAACCAACGTGGAATCTCACAAAAGCATACAAGAATTTTGAAAGGACTTTTGCTAGATCATCTTTTTGGGTAATAAAAGCTTAAGAAGTGATGAATTTGAATTTTAATGAAATTTTTGTGGTTTTCGGGCTGTTTGTTCCTAAGTCTTGGTAGGAAATTCAAAAAGCTCTAGAAGACTGTTCTCTCTCTAGGATTTTAATCAATCCATTCATGACTGATAAGGCTTTGTTGAAATTTGTTGAATAATTCCTTAAAAAAAATTTGAAGGTAAATGAGGGCTTTTTGGAGAATTATATTTGAAGTTGAAAATTGATGTTATGACGAGCATTTTCATCTGGAGTTCATTGAAGGTTATGAAGAATGGATTTCTTTAAAAAAATTACCTTTGTCATACTGGAAAAGAAGCACTTTTGAAGCCATTGGAGAGCCCTTTGGAGGCCTTGTTAACGTTTCTTCCCAAACCGTTAATTTACTAGATTGTTCAAAAGCTCGTATCGATTTTGAGTAAAATATTTGTGGTTTTATCCCAAAAACAATCGAGATAAAAGATAGACGGGGAAAGATGTTCTCATATTCTGATTGCTTGCCTTTTGTAAAGGTTGCTTGGGGTTTCTTATATTGCACTATCATTTCTCTTCATGGAAAGTCTGTTTTTCAACTTAAAAATCGATTCGGGAACTGTAAACTACATCAGCAGCTGACATGGCTTATTATCTTTGTTGTCACAGGACAGCCAAAACGACATCTTCTTACAACTGGTTGGAGTGTGTTTGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTACTTTTTATATGGTAACTACTCCATTTCCGCCTTGCGTTTTCATTCTATGTGTCCTATTTCAGAGTTCGTAATTTGAACACCCTGAATCACTTATCTAGGAACGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACAAGACCACAAACTGCGATGCCCTCCTCTGTTTTATCAAGTGATAGCATGCACATTGGACTCCTTGCGGCTGCTGCTCATGCTGCCGCAACCAATAGCTGTTTCACAGTTTTCTACAACCCCAGGTTTTGAAATATTCTTTTATTTTACTACTGTTATAGCTTTTTTATAATTTAATTTTTGACCCTTCTTAAAACGTTTTCTTCTGTAAAAAATGATTACAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGGATGCGTTTTCGGATGCTTTTTGAGACTGAAGAGTCGAGCGTTCGAAGGTATGATAAGTTTAAATAGTTTATTATAATCCGTTTGATTTAAGAACATTCTTGTATACTTCCCTCTTCAGCACTTCCATGTTGAAATTCAAACTCGATGTAGTGGTTCTCTTCAAGTTCTACCGAGTGATAATGCTAAAAATTACTTCTCTCACGATGTTAGTTCTTATTTAAGTGAACATTGAATCCCTATCAAGCCTTAGTCTTCCAGATGCATATTCCATGTATCTTTAGGTTGGTGTATCGACACCTTAATTCTTAAAAAATTGCATGCCCTCCTCGGTTTGCAAGGATGAGGTACCGTATCGTATCGTACTTCGTCTCAAACAACCTTCATTTTCTCTTACAACCAATATATTTAGTTGTACTTGCTTTGTTCGCTGTGTTCGCTGTCGACCCACTAAACTAGATCCAAAGTCTTTAAAATATATGTTCCAAGGTTATTCTCATGTTCAAAAAGGGTATCAGTGTTATAGTTCTAGTCTCGATCGATATTTTTTCTCTCTTGATGCCACTTCTTTGAAGATTCTTCTTTATTTTCTCCACCTTTGAGTAAGAGTCTCGTCGAGCATAAAAAAGAAGATTTTATTATTTACGTTACTCTCTTCTTGTGAGAGCCTTCTAATGATCCACCTCCCACCTCAATCTGTACCCGTTTTTACGCTCCTACCTATCACTCAGATTTATCCTAGACAACCAGCTCCTTTAATTATGTGACCTATGCCAGACACTTTTTCGATCTTCCTATTGCTCTTTGTAAAGGTAAACATCAGTACACTTATCCTATTTCCTCTTTTGTTTGATATAACCTTTTGCCCTCTTCTTCCTGTTCTTTCGTTAGGTCTCTATAGTCTATATTTGTTCTAAGACTGTTCATGAGGTTTTGTTTCATCTTGGTTGCCTTGTTGGAGGAGATGACTACCTTAGATTACAACTATACCTTGTGACTTAGTTTATCTTCCAATAGAAAAGAAGCGTATTGTTGGCGCAATCAAAGTCGATGCAGGTGGATCTGTAGCCTGGTTGAAAGCTCCTTTTAGTGTTAAAGGCTGCACACGAACTTATGGAGTTGACTATTCTGATACTTTTTCTCTGGATACTAAATTGGCTTTTGTTAGGTTATTCGTTTAATTTGCATCTATTCATCACTGACCCTTGCATGAGCTTGACATTAAAAATGACTTTTTTCATGGTGATCTTCTAGAAGAGATGTATATGGAGCAACCTCTAGGTTTGTTGCTCGAAAGGACAGGTATGTCGTCTTCGTAAATCCTTATTTTGATTAAAGAATTGGCCACAAGAATGGTTTGGAAATTTAGTGATGAAAAACTTTGGAATGAGGAAAAGCAAGATCATTTTGTGGTGTCTTCCGGCTGGTTCGTCCATCATAACTAAGTTTCACTCTGATCAGTTGCCGATTTGCAAAAGAATTCTCGGACTTCTAGTAGCCGTAATTTTGGATAAACCTTCACGATTTCCAGGATTCGCAAGGTTCTGAGATCCAGCCCATCGACAGCTGCTCTTAACCCACCTGCTTCCAAAACAATTTCCCCATTTAAGGCCCATTCCAATCACATGCTTCAATCCCACTTGGCCCTCTTGGACAAAAGCGTTAGTCCAGACAAAACGATCGAGCTTTAA

mRNA sequence

ATGTTATCGATTGAGAGTGATTGGGTAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTTCTGGGACTCGGGTTGTCTACTTCCCTCAGGGGCACAGCGAACAGGAGGTTATGTATGTATGCTCACCTTCTGTTTTTGTCAACCAGTATTCTGAAAAGAAGCGTATTGTTGGCGCAATCAAAGTCGATGCAGGTGGATCTGTAGCCTGGTTGAAAGCTCCTTTTAGTGTTAAAGGCTGCACACGAACTTATGGAGTTGACTATTCTGATACTTTTTCTCTGGATACTAAATTGGCTTTTGTTAGAAGAGATGTATATGGAGCAACCTCTAGGTTTGTTGCTCGAAAGGACAGGATTCGCAAGGTTCTGAGATCCAGCCCATCGACAGCTGCTCTTAACCCACCTGCTTCCAAAACAATTTCCCCATTTAAGGCCCATTCCAATCACATGCTTCAATCCCACTTGGCCCTCTTGGACAAAAGCGTTAGTCCAGACAAAACGATCGAGCTTTAA

Coding sequence (CDS)

ATGTTATCGATTGAGAGTGATTGGGTAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTTCTGGGACTCGGGTTGTCTACTTCCCTCAGGGGCACAGCGAACAGGAGGTTATGTATGTATGCTCACCTTCTGTTTTTGTCAACCAGTATTCTGAAAAGAAGCGTATTGTTGGCGCAATCAAAGTCGATGCAGGTGGATCTGTAGCCTGGTTGAAAGCTCCTTTTAGTGTTAAAGGCTGCACACGAACTTATGGAGTTGACTATTCTGATACTTTTTCTCTGGATACTAAATTGGCTTTTGTTAGAAGAGATGTATATGGAGCAACCTCTAGGTTTGTTGCTCGAAAGGACAGGATTCGCAAGGTTCTGAGATCCAGCCCATCGACAGCTGCTCTTAACCCACCTGCTTCCAAAACAATTTCCCCATTTAAGGCCCATTCCAATCACATGCTTCAATCCCACTTGGCCCTCTTGGACAAAAGCGTTAGTCCAGACAAAACGATCGAGCTTTAA

Protein sequence

MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQEVMYVCSPSVFVNQYSEKKRIVGAIKVDAGGSVAWLKAPFSVKGCTRTYGVDYSDTFSLDTKLAFVRRDVYGATSRFVARKDRIRKVLRSSPSTAALNPPASKTISPFKAHSNHMLQSHLALLDKSVSPDKTIEL

Homology

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BLAST of Csor.00g290540 vs. ExPASy Swiss-Prot
Match: Q9FGV1 (Auxin response factor 8 OS=Arabidopsis thaliana OX=3702 GN=ARF8 PE=1 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 5.0e-20
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 13 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          MKLSTSG GQQ HEG  +KCLNSELWHACAGPLVSLP+SG+RVVYFPQGHSEQ
Sbjct: 1  MKLSTSGLGQQGHEG--EKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQ 51

[Close]

BLAST of Csor.00g290540 vs. ExPASy Swiss-Prot
Match: Q9ZTX8 (Auxin response factor 6 OS=Arabidopsis thaliana OX=3702 GN=ARF6 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 13 MKLSTSGFGQQDHE-GGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          M+LS++GF  Q HE  GEK+ LNSELWHACAGPLVSLP  G+RVVYFPQGHSEQ
Sbjct: 1  MRLSSAGFNPQPHEVTGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQ 54

[Close]

BLAST of Csor.00g290540 vs. ExPASy Swiss-Prot
Match: A2X1A1 (Auxin response factor 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARF6 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-14
Identity = 40/59 (67.80%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 13 MKLSTSGFGQQDHE------GGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          MKLS S  G  D          E+KCLNSELWHACAGPLVSLP  G+RVVYFPQGHSEQ
Sbjct: 1  MKLSPSAGGVSDQPPSPPEVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQ 59

[Close]

BLAST of Csor.00g290540 vs. ExPASy Swiss-Prot
Match: Q6H6V4 (Auxin response factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF6 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-14
Identity = 40/59 (67.80%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 13 MKLSTSGFGQQDHE------GGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          MKLS S  G  D          E+KCLNSELWHACAGPLVSLP  G+RVVYFPQGHSEQ
Sbjct: 1  MKLSPSAGGVSDQPPSPPEVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQ 59

[Close]

BLAST of Csor.00g290540 vs. ExPASy Swiss-Prot
Match: Q258Y5 (Auxin response factor 12 OS=Oryza sativa subsp. indica OX=39946 GN=ARF12 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-14
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 29 EKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          EKKCLNSELWHACAGPLV LPT GTRVVYFPQGHSEQ
Sbjct: 24 EKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQ 60

[Close]

BLAST of Csor.00g290540 vs. NCBI nr
Match: KAG6601996.1 (Auxin response factor 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 405 bits (1042), Expect = 9.47e-143
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60
           MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ
Sbjct: 1   MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60

Query: 61  GHSEQEVMYVCSPSVFVNQYSEKKRIVGAIKVDAGGSVAWLKAPFSVKGCTRTYGVDYSD 120
           GHSEQEVMYVCSPSVFVNQYSEKKRIVGAIKVDAGGSVAWLKAPFSVKGCTRTYGVDYSD
Sbjct: 61  GHSEQEVMYVCSPSVFVNQYSEKKRIVGAIKVDAGGSVAWLKAPFSVKGCTRTYGVDYSD 120

Query: 121 TFSLDTKLAFVRRDVYGATSRFVARKDRIRKVLRSSPSTAALNPPASKTISPFKAHSNHM 180
           TFSLDTKLAFVRRDVYGATSRFVARKDRIRKVLRSSPSTAALNPPASKTISPFKAHSNHM
Sbjct: 121 TFSLDTKLAFVRRDVYGATSRFVARKDRIRKVLRSSPSTAALNPPASKTISPFKAHSNHM 180

Query: 181 LQSHLALLDKSVSPDKTIEL 200
           LQSHLALLDKSVSPDKTIEL
Sbjct: 181 LQSHLALLDKSVSPDKTIEL 200

[Close]

BLAST of Csor.00g290540 vs. NCBI nr
Match: XP_023531911.1 (auxin response factor 8-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142 bits (358), Expect = 3.45e-35
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60
          MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ
Sbjct: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60

Query: 61 GHSEQ 65
          GHSEQ
Sbjct: 61 GHSEQ 65

[Close]

BLAST of Csor.00g290540 vs. NCBI nr
Match: XP_022957396.1 (auxin response factor 8-like [Cucurbita moschata])

HSP 1 Score: 142 bits (358), Expect = 3.45e-35
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60
          MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ
Sbjct: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60

Query: 61 GHSEQ 65
          GHSEQ
Sbjct: 61 GHSEQ 65

[Close]

BLAST of Csor.00g290540 vs. NCBI nr
Match: XP_022989950.1 (auxin response factor 8-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 142 bits (358), Expect = 3.45e-35
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60
          MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ
Sbjct: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60

Query: 61 GHSEQ 65
          GHSEQ
Sbjct: 61 GHSEQ 65

[Close]

BLAST of Csor.00g290540 vs. NCBI nr
Match: KAG7032695.1 (Auxin response factor 8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142 bits (358), Expect = 3.52e-35
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60
          MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ
Sbjct: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60

Query: 61 GHSEQ 65
          GHSEQ
Sbjct: 61 GHSEQ 65

[Close]

BLAST of Csor.00g290540 vs. ExPASy TrEMBL
Match: A0A6J1JNS1 (Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111486985 PE=3 SV=1)

HSP 1 Score: 142 bits (358), Expect = 1.67e-35
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60
          MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ
Sbjct: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60

Query: 61 GHSEQ 65
          GHSEQ
Sbjct: 61 GHSEQ 65

[Close]

BLAST of Csor.00g290540 vs. ExPASy TrEMBL
Match: A0A6J1GZ34 (Auxin response factor OS=Cucurbita moschata OX=3662 GN=LOC111458805 PE=3 SV=1)

HSP 1 Score: 142 bits (358), Expect = 1.67e-35
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60
          MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ
Sbjct: 1  MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQ 60

Query: 61 GHSEQ 65
          GHSEQ
Sbjct: 61 GHSEQ 65

[Close]

BLAST of Csor.00g290540 vs. ExPASy TrEMBL
Match: A0A6J1JQS1 (Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111486985 PE=3 SV=1)

HSP 1 Score: 134 bits (336), Expect = 1.54e-32
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 6  SDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 65
          SDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ
Sbjct: 37 SDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 96

[Close]

BLAST of Csor.00g290540 vs. ExPASy TrEMBL
Match: A0A5D3C9K7 (Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold871G00080 PE=3 SV=1)

HSP 1 Score: 122 bits (307), Expect = 1.20e-28
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 10 KLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 65
          KLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPT+GTRVVYFPQGHSEQ
Sbjct: 41 KLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 96

[Close]

BLAST of Csor.00g290540 vs. ExPASy TrEMBL
Match: A0A445FCX3 (Auxin response factor 8 OS=Glycine soja OX=3848 GN=D0Y65_050624 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 1.40e-27
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 13 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 65
          MKLSTSG GQQ HEGGEKKCLNSELWHAC GPLVSLPT+GTRVVYFPQGH+EQ
Sbjct: 1  MKLSTSGLGQQGHEGGEKKCLNSELWHACTGPLVSLPTAGTRVVYFPQGHNEQ 53

[Close]

BLAST of Csor.00g290540 vs. TAIR 10
Match: AT5G37020.1 (auxin response factor 8 )

HSP 1 Score: 99.4 bits (246), Expect = 3.5e-21
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 13 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          MKLSTSG GQQ HEG  +KCLNSELWHACAGPLVSLP+SG+RVVYFPQGHSEQ
Sbjct: 1  MKLSTSGLGQQGHEG--EKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQ 51

[Close]

BLAST of Csor.00g290540 vs. TAIR 10
Match: AT5G37020.2 (auxin response factor 8 )

HSP 1 Score: 99.4 bits (246), Expect = 3.5e-21
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 13 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          MKLSTSG GQQ HEG  +KCLNSELWHACAGPLVSLP+SG+RVVYFPQGHSEQ
Sbjct: 1  MKLSTSGLGQQGHEG--EKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQ 51

[Close]

BLAST of Csor.00g290540 vs. TAIR 10
Match: AT1G30330.1 (auxin response factor 6 )

HSP 1 Score: 89.0 bits (219), Expect = 4.8e-18
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 13 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          M+LS++GF  Q HE GEK+ LNSELWHACAGPLVSLP  G+RVVYFPQGHSEQ
Sbjct: 1  MRLSSAGFNPQPHE-GEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQ 52

[Close]

BLAST of Csor.00g290540 vs. TAIR 10
Match: AT1G30330.2 (auxin response factor 6 )

HSP 1 Score: 88.2 bits (217), Expect = 8.2e-18
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 13 MKLSTSGFGQQDHE-GGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 66
          M+LS++GF  Q HE  GEK+ LNSELWHACAGPLVSLP  G+RVVYFPQGHSEQ
Sbjct: 1  MRLSSAGFNPQPHEVTGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQ 54

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BLAST of Csor.00g290540 vs. TAIR 10
Match: AT1G19220.1 (auxin response factor 19 )

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 13 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQEVMYVCS 72
          MK  ++GF    +E GEKK +NS+LWHACAGPLVSLP  G+ VVYFPQGHSEQ    +  
Sbjct: 1  MKAPSNGFLPSSNE-GEKKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQK 60

Query: 73 PSVFVNQY 81
           + F+  Y
Sbjct: 61 QTDFIPNY 67

The following BLAST results are available for this feature:

BLAST of Csor.00g290540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGV1	5.0e-20	86.79	Auxin response factor 8 OS=Arabidopsis thaliana OX=3702 GN=ARF8 PE=1 SV=2	[more]
Q9ZTX8	1.1e-16	75.93	Auxin response factor 6 OS=Arabidopsis thaliana OX=3702 GN=ARF6 PE=1 SV=2	[more]
A2X1A1	1.8e-14	67.80	Auxin response factor 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARF6 PE=3 SV=1	[more]
Q6H6V4	1.8e-14	67.80	Auxin response factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF6 PE=1 SV...	[more]
Q258Y5	1.8e-14	94.59	Auxin response factor 12 OS=Oryza sativa subsp. indica OX=39946 GN=ARF12 PE=3 SV...	[more]

BLAST of Csor.00g290540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601996.1	9.47e-143	100.00	Auxin response factor 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023531911.1	3.45e-35	100.00	auxin response factor 8-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022957396.1	3.45e-35	100.00	auxin response factor 8-like [Cucurbita moschata]	[more]
XP_022989950.1	3.45e-35	100.00	auxin response factor 8-like isoform X2 [Cucurbita maxima]	[more]
KAG7032695.1	3.52e-35	100.00	Auxin response factor 8 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Csor.00g290540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JNS1	1.67e-35	100.00	Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111486985 PE=3 SV=1	[more]
A0A6J1GZ34	1.67e-35	100.00	Auxin response factor OS=Cucurbita moschata OX=3662 GN=LOC111458805 PE=3 SV=1	[more]
A0A6J1JQS1	1.54e-32	100.00	Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111486985 PE=3 SV=1	[more]
A0A5D3C9K7	1.20e-28	98.21	Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87...	[more]
A0A445FCX3	1.40e-27	90.57	Auxin response factor 8 OS=Glycine soja OX=3848 GN=D0Y65_050624 PE=4 SV=1	[more]

BLAST of Csor.00g290540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37020.1	3.5e-21	86.79	auxin response factor 8	[more]
AT5G37020.2	3.5e-21	86.79	auxin response factor 8	[more]
AT1G30330.1	4.8e-18	77.36	auxin response factor 6	[more]
AT1G30330.2	8.2e-18	75.93	auxin response factor 6	[more]
AT1G19220.1	1.1e-14	55.88	auxin response factor 19	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044835	Auxin response factor	PANTHER	PTHR31384	AUXIN RESPONSE FACTOR 4-RELATED	coord: 13..65
None	No IPR available	PANTHER	PTHR31384:SF85	AUXIN RESPONSE FACTOR	coord: 13..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g290540.m01	Csor.00g290540.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009725	response to hormone
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding