Csor.00g290530 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g290530
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionGRIP and coiled-coil domain-containing protein
LocationCsor_Chr04: 17020537 .. 17023658 (-)
RNA-Seq ExpressionCsor.00g290530
SyntenyCsor.00g290530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGAGCAGGTGGTCGGAGCAGGAATGGGAATGGGAATGAATCGATGGTTGTAGGGTTTCTGAAAACGGCGTTCAGATTCTTGAAGATGGCGGAGTTTGAGATACTTTTCGTTCTCTTCTTCATTGTAGCTTTTATTATCTTCAAAGATCTCGTAAGTTTCTCCCTTATTCGTCTGTTCTTATTTTTGCTCTGTCTTGAGGCTTGCTGTCTCAATTTGATTGGATCCGATGATATAGATCGAAATGATAATTGTAGAGAGCCATCTTTGCTGTTGATTCGTTGTTTTGGGATCTTGTTATCAGAAGTTTCGTGTATGTTAGTTTACTTTGACCCTCGAATTAGATTTAATCTGAGCAGCTGTTAATCTTCTTTCCCTTTTTTTTCAATGTATCTAGGTGCTGGTTTAGTCTAAACTTGTGAAAACATTAGAACTTTTCGCTAATTTCAGAATGACAAACTCAGGTTTTAGGGGAAAAAAACTGCTGTTTTTTGGTTTTCAAAATTTGGCTAGAAGGTAAGAGAAATATTTTTGAAAGTAGATTAGAAAACAAGGAAGAAATCTATAGATTAGAGGACAAGGAAGATATTTATGTGTGTATGATGTTTATAAATAGTAAACAAATCAAAAAAGTTATCATATAGTCCCTTAGATATTCCACTAAACACACAAGGAGTTCAAGAACTTGAAAATTTTCTATTCCACTAAACACACAAGGAGTTCAAGAACTTGAAAATTTTCCTATACGTAGTTGTCCCCAATCGAAAAATCTGCGAGATCCGGGTCACAATTTGTATAGGCAATGGTTGAATTGGCTACTAATGTTGGCTTGTGAGCTTTGGTACTCGAACCATTGAATATTTAGGATTGCCTCTTGGCAGCAACCTTTAGATTTGTAAGTTGCAAAATTTTGTGATGGAAAAAGTTGCCAACTAAGCTTTTGATATGGAAGAAGTGGCTGTTTTTGCAACCTCACTTTGGCCAAGTTGGTGGATACAAATATTCCTACCTATTTTTCTTTTCTTTTCTTTTCTTTTCCTTTCCTGGTTTTTAGAATTCTTCCCATTGTGACTAAGAACTTGGAGAGGTCTATTAGAAATTTTGCACAGTAAGCAACAGATTGTAATTATGATAGCCACGACTGCATTAGATGGAACATGGCTGTTTCTGTTGGTCGAGAACGGTCTCATGTCAGGCTCGTTAGAAAGCAATAGTGAGCTGGCCTATATTATAAAATAGAATCATTCGAAGTGTCAAGAGATCCTTGGGGTTGGGAAATAGGTTGTTGTTGCTCCAGTCATGGTAAAAGACTAGTTTTATATTGCTAGACGTGGCTTTCTTATTGAAGGCTGACTTTCAAGTGGATAGTAGTTCTTTGGTCAAATTCTGAGCAGATTTCTATAAGGGAAACTGTACTTCAAGTCTATGCTTCTCTAGGCGTAGGCTATATTTCATTGTGGAGAACAAACCGTTTAATGTTGGTAGTTCTTAGGTTTGTAAGATCGAAAGGTGGAATTGCAAGAGATGAAGGGAGAAGGCAAGATACGAAAAAGAGGAACGATATATTGAAGAGATAAATGATTTATATGTTCGTGTCCGCAATAGGACGAAAAATATAAGTCTAGACACACAAAGTATTCACAATACAGAAGGAAAAGCTTTGTACAAAAGGAAATAAAATACGTTTAATGAATAAGAGAGTGAACCCTGCTGTACTTCTATGATCTCCTTTGGATAGAGTTTTGTCATAGGTTGATGTCTTGTTCATCTGTCTCTTCTTTTTGGCATTAATGAAACCATTTTCTCTTGCCAAAAAGAACATTTGGAGAATCTAGACGTCTGCAGTAAAAGTTATTTTGGTGAATCCCTATATTTATGTACCACACTTAGAAATAATATATTCCGGCCTTTTGCTTGTCATTTTGCCACATATGTGCCATTATTTAGGAGTTCCCATAGCTATATTGTTCGCTTGGGAGCACTTTCCTTCCCTAGCTCATTGGCGTATAACAGGGCAACTTCTTGAAATGTGAACATATTGATGACTGAAAGCAGTTCTCAGGATTCAGAATGAGGTCATATTGTAGAATGGATTCTGTTCATAAATTCAGGAAAAGGGGAATTGATTCTCTCCTTCTTAGTTCCAATAAGCTTGTATAAATTTGGTTGTTTCTTTTCCGTTCTGAGGTGTAATCAGTTTGAGATAGCGAGATGCATTGCATTTGTACGATTATGGAAAAAAACCTTCATATCTTGGATTTTCTTGAATAAATTATTGTAGACAGTTCTTGTAACAACTCAAACCCACCGTTAAAGATATTGTCTGCTTTTGCCCGTTACGTATTGTCGTCAATCTCATGGTTTTAAAACACATCTGCTAGGGAGAGATTTCCACGCCCTTATAAAGAATGTTTTGTTCCCCTCTCCAACAGATGTGAGATCTCACAGTTCTTGATGTTGTTCGCTATGTAGGCATAGACGTCAACATTGAAGATTAATTTCATTGTTTATGTTACTCGTGGGCTCACTCTCCCTTTTCAACAACAGTCAGATAGATTCATAGTGCGCTTGGTGCAGTAGTTAGTTGGTTGAGCGTAGGAATGCTCATGTTGAGTTTGGGCTTTTATTCATTCAAGATTTTTTCTCTAAAACAAAGTAGAACTTCCATACTTACTCCGTTCCATTACTAACTTTCTAGTTTTCTATTTTAAAAGCTTTTTTTTCTTTTTGCTTTTTTGACCTTTGGAACAAATGAGCAAACACTCTATAATACTCTTTAGGTCTAGATTTTATGTTAGCTCATAAATATTTTATAAAAAAGAATATTTTTAGTTCTTGAAACTAATCTTTGTAATAAATTATTTAGCAAAAACCTGACATTAACACTTCCTCTGTTGTTTATTTGCCTTATCATTAATTAGATCACGAACATCCTTATCTCGTTAATTATCCATAGTATGATTACTGTTCATTATCTATTTTTCTTATTCTCCCTCTATTCATGTGCAAAAGCTAAGAGATTCTAATAATGTGGCAAACAACTGCAGACATCAAGACCAGAATACAATCAGATCCTTGTGAAGAAGCCTGAGGGGTTTGATATGTGGCCATTCCCTTAA

mRNA sequence

ATGGCTCGAGCAGGTGGTCGGAGCAGGAATGGGAATGGGAATGAATCGATGGTTGTAGGGTTTCTGAAAACGGCGTTCAGATTCTTGAAGATGGCGGAGTTTGAGATACTTTTCGTTCTCTTCTTCATTGTAGCTTTTATTATCTTCAAAGATCTCACATCAAGACCAGAATACAATCAGATCCTTGTGAAGAAGCCTGAGGGGTTTGATATGTGGCCATTCCCTTAA

Coding sequence (CDS)

ATGGCTCGAGCAGGTGGTCGGAGCAGGAATGGGAATGGGAATGAATCGATGGTTGTAGGGTTTCTGAAAACGGCGTTCAGATTCTTGAAGATGGCGGAGTTTGAGATACTTTTCGTTCTCTTCTTCATTGTAGCTTTTATTATCTTCAAAGATCTCACATCAAGACCAGAATACAATCAGATCCTTGTGAAGAAGCCTGAGGGGTTTGATATGTGGCCATTCCCTTAA

Protein sequence

MARAGGRSRNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEYNQILVKKPEGFDMWPFP
Homology
[Close]
BLAST of Csor.00g290530 vs. NCBI nr
Match: KAG6601997.1 (hypothetical protein SDJN03_07230, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148 bits (374), Expect = 6.67e-45
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MARAGGRSRNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEYNQ 60
          MARAGGRSRNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEYNQ
Sbjct: 1  MARAGGRSRNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEYNQ 60

Query: 61 ILVKKPEGFDMWPFP 75
          ILVKKPEGFDMWPFP
Sbjct: 61 ILVKKPEGFDMWPFP 75

[Close]
BLAST of Csor.00g290530 vs. NCBI nr
Match: KAG7032696.1 (hypothetical protein SDJN02_06746 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143 bits (361), Expect = 6.82e-43
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 0 

Query: 1  MARAGGRSRNGNGN--ESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEY 60
          MARAGGRSRNGNGN  ESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEY
Sbjct: 1  MARAGGRSRNGNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEY 60

Query: 61 NQILVKKPEGFDMWPFP 75
          NQILVKKPEGFDMWPFP
Sbjct: 61 NQILVKKPEGFDMWPFP 77

[Close]
BLAST of Csor.00g290530 vs. NCBI nr
Match: XP_022141376.1 (uncharacterized protein LOC111011789 [Momordica charantia])

HSP 1 Score: 124 bits (312), Expect = 1.93e-35
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 1  MARAGGRSRNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEYNQ 60
          MAR GGRSRNGN  +S VVGFLK   RFLKMAEFEILF+LFF+VAFI+FKDLTSRPEYNQ
Sbjct: 1  MARTGGRSRNGN--DSAVVGFLKAVLRFLKMAEFEILFILFFVVAFILFKDLTSRPEYNQ 60

Query: 61 ILVKKPEGFDMWPF 74
          ILVKKPEGFDMWPF
Sbjct: 61 ILVKKPEGFDMWPF 72

[Close]
BLAST of Csor.00g290530 vs. NCBI nr
Match: XP_022993749.1 (uncharacterized protein LOC111489659 [Cucurbita maxima])

HSP 1 Score: 120 bits (302), Expect = 6.14e-34
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = 0 

Query: 1  MARAGGRSRNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEYNQ 60
          MA AGGRSR+GN  E    GFLKT FRFLKMAEFEILFVLFFIVAFI+FKDLTSRPEYNQ
Sbjct: 1  MALAGGRSRSGN--EPSGGGFLKTVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQ 60

Query: 61 ILVKKPEGFDMWPF 74
          ILVKKPEGFDMWPF
Sbjct: 61 ILVKKPEGFDMWPF 72

[Close]
BLAST of Csor.00g290530 vs. NCBI nr
Match: XP_008463128.1 (PREDICTED: uncharacterized protein LOC103501353 [Cucumis melo])

HSP 1 Score: 120 bits (300), Expect = 1.24e-33
Identity = 63/74 (85.14%), Postives = 66/74 (89.19%), Query Frame = 0 

Query: 1  MARAGGRSRNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEYNQ 60
          MARA GRSRNG+  +S   GFLK  FRFLKMAEFEILFVLFFIVAFI+FKDLTSRPEYNQ
Sbjct: 1  MARASGRSRNGS--DSSGGGFLKATFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQ 60

Query: 61 ILVKKPEGFDMWPF 74
          ILVKKPEGFDMWPF
Sbjct: 61 ILVKKPEGFDMWPF 72

[Close]
BLAST of Csor.00g290530 vs. ExPASy TrEMBL
Match: A0A6J1CIZ9 (uncharacterized protein LOC111011789 OS=Momordica charantia OX=3673 GN=LOC111011789 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 9.36e-36
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 1  MARAGGRSRNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEYNQ 60
          MAR GGRSRNGN  +S VVGFLK   RFLKMAEFEILF+LFF+VAFI+FKDLTSRPEYNQ
Sbjct: 1  MARTGGRSRNGN--DSAVVGFLKAVLRFLKMAEFEILFILFFVVAFILFKDLTSRPEYNQ 60

Query: 61 ILVKKPEGFDMWPF 74
          ILVKKPEGFDMWPF
Sbjct: 61 ILVKKPEGFDMWPF 72

[Close]
BLAST of Csor.00g290530 vs. ExPASy TrEMBL
Match: A0A6J1K0Z3 (uncharacterized protein LOC111489659 OS=Cucurbita maxima OX=3661 GN=LOC111489659 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 2.97e-34
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = 0 

Query: 1  MARAGGRSRNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEYNQ 60
          MA AGGRSR+GN  E    GFLKT FRFLKMAEFEILFVLFFIVAFI+FKDLTSRPEYNQ
Sbjct: 1  MALAGGRSRSGN--EPSGGGFLKTVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQ 60

Query: 61 ILVKKPEGFDMWPF 74
          ILVKKPEGFDMWPF
Sbjct: 61 ILVKKPEGFDMWPF 72

[Close]
BLAST of Csor.00g290530 vs. ExPASy TrEMBL
Match: A0A1S3CK24 (uncharacterized protein LOC103501353 OS=Cucumis melo OX=3656 GN=LOC103501353 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 6.00e-34
Identity = 63/74 (85.14%), Postives = 66/74 (89.19%), Query Frame = 0 

Query: 1  MARAGGRSRNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEYNQ 60
          MARA GRSRNG+  +S   GFLK  FRFLKMAEFEILFVLFFIVAFI+FKDLTSRPEYNQ
Sbjct: 1  MARASGRSRNGS--DSSGGGFLKATFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQ 60

Query: 61 ILVKKPEGFDMWPF 74
          ILVKKPEGFDMWPF
Sbjct: 61 ILVKKPEGFDMWPF 72

[Close]
BLAST of Csor.00g290530 vs. ExPASy TrEMBL
Match: A0A6J1FE48 (uncharacterized protein LOC111444698 OS=Cucurbita moschata OX=3662 GN=LOC111444698 PE=4 SV=1)

HSP 1 Score: 117 bits (294), Expect = 4.94e-33
Identity = 62/74 (83.78%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 1  MARAGGRSRNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEYNQ 60
          MARAGGRSR+GN  E    GFLK  FR LKM EFEILFVLFFIVAFI+FKDLTSRPEYNQ
Sbjct: 1  MARAGGRSRSGN--EPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQ 60

Query: 61 ILVKKPEGFDMWPF 74
          ILVKKPEGFDMWPF
Sbjct: 61 ILVKKPEGFDMWPF 72

[Close]
BLAST of Csor.00g290530 vs. ExPASy TrEMBL
Match: A0A0A0KPT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315390 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 1.50e-32
Identity = 62/74 (83.78%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 1  MARAGGRSRNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEYNQ 60
          MARA GR RNG   +S   GFLK  FRFLKMAEFEILFVLFFIVAFI+FKDLTSRPEYNQ
Sbjct: 1  MARATGRIRNGT--DSSGGGFLKATFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQ 60

Query: 61 ILVKKPEGFDMWPF 74
          ILVKKPEGFDMWPF
Sbjct: 61 ILVKKPEGFDMWPF 72

[Close]
BLAST of Csor.00g290530 vs. TAIR 10
Match: AT3G14430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 9.9e-17
Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = 0 

Query: 1  MARAGGRSRNG-NGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEYN 60
          + R  G +R G   ++S++  F+ + F F ++AEFEILFVLF ++ ++IFKDLTSRPEYN
Sbjct: 2  IGRRAGTNRVGMRRDDSLLTRFVDSVFYFFRLAEFEILFVLFMLITYVIFKDLTSRPEYN 61

Query: 61 QILVKKPEGFDMWPF 75
          +ILV+KP G D+WPF
Sbjct: 62 RILVEKPGGSDIWPF 76

The following BLAST results are available for this feature:
BLAST of Csor.00g290530 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g290530 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6601997.16.67e-45100.00hypothetical protein SDJN03_07230, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7032696.16.82e-4397.40hypothetical protein SDJN02_06746 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022141376.11.93e-3585.14uncharacterized protein LOC111011789 [Momordica charantia][more]
XP_022993749.16.14e-3486.49uncharacterized protein LOC111489659 [Cucurbita maxima][more]
XP_008463128.11.24e-3385.14PREDICTED: uncharacterized protein LOC103501353 [Cucumis melo][more]
BLAST of Csor.00g290530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CIZ99.36e-3685.14uncharacterized protein LOC111011789 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6J1K0Z32.97e-3486.49uncharacterized protein LOC111489659 OS=Cucurbita maxima OX=3661 GN=LOC111489659... [more]
A0A1S3CK246.00e-3485.14uncharacterized protein LOC103501353 OS=Cucumis melo OX=3656 GN=LOC103501353 PE=... [more]
A0A6J1FE484.94e-3383.78uncharacterized protein LOC111444698 OS=Cucurbita moschata OX=3662 GN=LOC1114446... [more]
A0A0A0KPT81.50e-3283.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315390 PE=4 SV=1[more]
BLAST of Csor.00g290530 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G14430.19.9e-1753.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37223OS08G0528601 PROTEINcoord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g290530.m01Csor.00g290530.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006979 response to oxidative stress
cellular_component GO:0016021 integral component of membrane