Csor.00g289790 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g289790
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 17469218 .. 17469605 (-)
RNA-Seq Expression	Csor.00g289790
Synteny	Csor.00g289790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGACTGAAACACAACACAGCACACATTAAGCTAGATGGGGTTCTACTCAACTGGGGGAATATCTTCTGCAAACACCCTTATGAAATCCGTTTCAGAAACCTGAGCATGTTATGGAAGGACGCAGGCGGCAGCAAGGTTGCATTAAGGCAGGTTACCAAAACAGTCAAAAACTTGGAGAATAGAAAGGTCCGGAATAGGAGCCATAAGTGGTGTGGTCAAAAGGGAAGTGGAAGAGGTTGGGTTTAGCCCAAACAATGCTAAGAGAAGCGGCAGAGTTGGGTTTGCATGGAAATGGGAATGGGGCTGTTCTTGTTGCTTGTTGGCAGAGGCAGAGGCAGGGGCAGGGGCTGTGGCAGTGTCAGTGGCAGTGGCAGCGCAGAGCTAA

mRNA sequence

ATGCGACTGAAACACAACACAGCACACATTAAGCTAGATGGGGTTCTACTCAACTGGGGGAATATCTTCTGCAAACACCCTTATGAAATCCGTTTCAGAAACCTGAGCATGTTATGGAAGGACGCAGGCGGCAGCAAGGTTGCATTAAGGCAGGTTACCAAAACAGTCAAAAACTTGGAGAATAGAAAGGTCCGGAATAGGAGCCATAAGTGGTGTGGTCAAAAGGGAAGTGGAAGAGAGGCAGAGGCAGGGGCAGGGGCTGTGGCAGTGTCAGTGGCAGTGGCAGCGCAGAGCTAA

Coding sequence (CDS)

ATGCGACTGAAACACAACACAGCACACATTAAGCTAGATGGGGTTCTACTCAACTGGGGGAATATCTTCTGCAAACACCCTTATGAAATCCGTTTCAGAAACCTGAGCATGTTATGGAAGGACGCAGGCGGCAGCAAGGTTGCATTAAGGCAGGTTACCAAAACAGTCAAAAACTTGGAGAATAGAAAGGTCCGGAATAGGAGCCATAAGTGGTGTGGTCAAAAGGGAAGTGGAAGAGAGGCAGAGGCAGGGGCAGGGGCTGTGGCAGTGTCAGTGGCAGTGGCAGCGCAGAGCTAA

Protein sequence

MRLKHNTAHIKLDGVLLNWGNIFCKHPYEIRFRNLSMLWKDAGGSKVALRQVTKTVKNLENRKVRNRSHKWCGQKGSGREAEAGAGAVAVSVAVAAQS

Homology

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BLAST of Csor.00g289790 vs. NCBI nr
Match: KAG6602069.1 (hypothetical protein SDJN03_07302, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197 bits (502), Expect = 1.02e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MRLKHNTAHIKLDGVLLNWGNIFCKHPYEIRFRNLSMLWKDAGGSKVALRQVTKTVKNLE 60
          MRLKHNTAHIKLDGVLLNWGNIFCKHPYEIRFRNLSMLWKDAGGSKVALRQVTKTVKNLE
Sbjct: 1  MRLKHNTAHIKLDGVLLNWGNIFCKHPYEIRFRNLSMLWKDAGGSKVALRQVTKTVKNLE 60

Query: 61 NRKVRNRSHKWCGQKGSGREAEAGAGAVAVSVAVAAQS 98
          NRKVRNRSHKWCGQKGSGREAEAGAGAVAVSVAVAAQS
Sbjct: 61 NRKVRNRSHKWCGQKGSGREAEAGAGAVAVSVAVAAQS 98

The following BLAST results are available for this feature:

BLAST of Csor.00g289790 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g289790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602069.1	1.02e-63	100.00	hypothetical protein SDJN03_07302, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g289790 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g289790 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g289790.m01	Csor.00g289790.m01	mRNA