Csor.00g289050 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTTTCATTGCGCTCGTTACTCTTTTTCCCCTTCCCCAAGCAAACCCAAGTTCAAATTAGTGCTCGGAAACAAGCCTGCGGTTCTGTTTTCTTCCCTTCGATCCACTCGGGCTTCTTACAATACTCTCGTCTCTGAGGTAATCTTTCTTCTTCTTCTTCTTCTTCTTTTATTTGATTTTTGTTGATGTGGGTTGTTGCATTGCTGCATTTTTGTTCATCGGAGATCGATTCGGGTTTGGTGGGATTTGTTCTTATCATTACACTTGAGGGCTCAGGCTTGTTTGCATTCTGTTGATGAATGTTGGGTTTGATCCAGATTGTATGTCTAACTTTGCTGAAGAAACTAATTGCCAAAATTTGTGGGTTTCGTGTTGATTCTAAGTTCTGGCTTACATTCTTGTCTCATTGCCTTGAATTCCATGCGTTGCTGAATTTTCTGTATGCAACGTACTTTATAATGCTTCTGTAAACAAGCTTAAGAAGTGAACTAGAATTGTTGGGAGGAGCCTCGGCTAGTTAAGGGGTTGATCATGAGTTTATAAGTAAGAAACACTATCTCTATTGCTATGAGGTCTTTTGGGAAAATCAAAAGGAGTTTATGCTCAAAGTGGATAATATCATACCATTGTGAAGGTTCATGATTTCTAACATGGTATCAAAGTCATGCATTTAACTTAACCATGTTAATAAAATCCTCAAATATCGAACAAAAAAAGTTGTGAGCCTCAAAGGTGTAGTAAAAAGTGACTCGAGTGTTGAAAAAATGGTGCACTTTGTTTGATGGCTCCAAAGAAGGATTTAAGCCTCGATTTAGGGGAGTTTGTTAACAAAGGGTGTACTTTGTTCGAGGGCTCTAGAGAAAGAGTCGAACCTCGATTAAGGGGAGGCTGTTCAAGGGCTTCATAGACCTCCGGGGAGGTTGTATGGTGTACTTTGTTTGCGGGAAAATTTGTTGAGAATTGTTGGGAGAGAAGTCCCACATCAGCTAATTAAGGGGTTGATCATGAGTTTATAAGTAAAGAACACAGTCTCAACAAAAGCAAAGTCACGAGAGCTTATGCTCAAAATGGACAATATTATACCATTGTGAAGGTCCGTGATTTCTAACATTCTGAACAGTAGACGCTGAGTTCCGTCAAAATTGTGTTACTCTGTCTTATGATGCTTTGATCTTTGTAGGCTGTCAGGATATTGGTTCCTCCAGCAAGATTTGAAGCTTCGAAGTTAAAAGTTGAATTCACTAGGGAGGTGAACAAGTGTGCAGGAATCACCCCAAGAACGTATATACTATCGCATTGCGACTTCACCGCTAATCTCACCTTAACCATCTCTGATGTTATCAACCTTGATCAGGTACGAACTTATTGCTACTTAATGTGTGTGACTGTGTGTGGAACTAACACATTGTGTTTCTGTTCTTATATTTGGGTGTGTGAATGCATACAGTTGAGAGGTTGGTACAACAAGGATGATGTGGTTGCTGAGTGGAAGAAAGTGAAAGATGAAATGTGTCTTCATGTACATTGCTATGTGAGCGGTCCTAATTCTTTGCTTGATCTTACTGCTGAGTTTAGATACCACATTTTCTCCAAAGAATTGCCTCTTGTAAGTTTTTCTTTTCCCACATTCCATTATAACTCATGTCCAAATTTGTTGGAAAAATTATTCGATGCAGCCCAAAACTCTTGGTGTAAGCCCACCGTTAGTAGATATTGTCTTCTTTGGGCTTTTCCTTTTGGATTTCCCTTCAAGATTTTAAAACGCGTCTACTAAAGAGAGCGTCTTTTCGAACTTCTCCTCAAGGTTTTAAAATGCATCTACTATGTAGAGGGTCTAGCCCTACTCCGACCACAGCCTTTATTGTGAGATCCCACATTGGTTGGAGAGGAGAACGAAGCATTTCTTATAAGGGTGTGAAAACCTCTCTCTAGTAGATGCGTTTTAAAACCTTGAGGGAAAGCTCAAAGAGAACAATATTTACTAGTGGATTGTTACAAACACAGGTTTCAAAAACCAAAAACCTGAAACCAAACAAACTGTCCCTTGGCTGTTTGGAGAACTCTCAGGCCTAACCTATCATGGTGGAAGTGCATATCATAGCAATGGTTAAGATTTTGGTATAAAGCTAAAGTCATATGTTTTTGTAAAACCAGGTACTTGAATCTGTCTTATATGGAGATTCAATTCTATTTAGGGAGAATCCCGAGCTGCTAGATGCCTTAGTCAGGGTATATTTCCATTCCAGTTCACAAAAGTATAATCGACTCGAATGCTGGGGGCCACTCAAGGATGCTGTGCAGGTAAACTTAGATATTATGAAAATTTCATTGAATGCTTGATCTACAAACCTTGATGCCTTCTGTTTCAATCCTTTCTTTTGCCTGCATTTTTCAGGGGAGGCATCATCATATGCAAGGGCTCCTAAGGGCAAGCCAGGATGTGTCCTCTCCTAAAAAGTTGAGAACTCCCAAATCAATTTTTCAAGCTCTCTTTGCCTTCCTTCTCTGA ATGGCCTTTCATTGCGCTCGTTACTCTTTTTCCCCTTCCCCAAGCAAACCCAAGTTCAAATTAGTGCTCGGAAACAAGCCTGCGGTTCTGTTTTCTTCCCTTCGATCCACTCGGGCTTCTTACAATACTCTCGTCTCTGAGGCTGTCAGGATATTGGTTCCTCCAGCAAGATTTGAAGCTTCGAAGTTAAAAGTTGAATTCACTAGGGAGGTGAACAAGTGTGCAGGAATCACCCCAAGAACGTATATACTATCGCATTGCGACTTCACCGCTAATCTCACCTTAACCATCTCTGATGTTATCAACCTTGATCAGTTGAGAGGTTGGTACAACAAGGATGATGTGGTTGCTGAGTGGAAGAAAGTGAAAGATGAAATGTGTCTTCATGTACATTGCTATGTGAGCGGTCCTAATTCTTTGCTTGATCTTACTGCTGAGTTTAGATACCACATTTTCTCCAAAGAATTGCCTCTTGTACTTGAATCTGTCTTATATGGAGATTCAATTCTATTTAGGGAGAATCCCGAGCTGCTAGATGCCTTAGTCAGGGTATATTTCCATTCCAGTTCACAAAAGTATAATCGACTCGAATGCTGGGGGCCACTCAAGGATGCTGTGCAGGGGAGGCATCATCATATGCAAGGGCTCCTAAGGGCAAGCCAGGATGTGTCCTCTCCTAAAAAGTTGAGAACTCCCAAATCAATTTTTCAAGCTCTCTTTGCCTTCCTTCTCTGA ATGGCCTTTCATTGCGCTCGTTACTCTTTTTCCCCTTCCCCAAGCAAACCCAAGTTCAAATTAGTGCTCGGAAACAAGCCTGCGGTTCTGTTTTCTTCCCTTCGATCCACTCGGGCTTCTTACAATACTCTCGTCTCTGAGGCTGTCAGGATATTGGTTCCTCCAGCAAGATTTGAAGCTTCGAAGTTAAAAGTTGAATTCACTAGGGAGGTGAACAAGTGTGCAGGAATCACCCCAAGAACGTATATACTATCGCATTGCGACTTCACCGCTAATCTCACCTTAACCATCTCTGATGTTATCAACCTTGATCAGTTGAGAGGTTGGTACAACAAGGATGATGTGGTTGCTGAGTGGAAGAAAGTGAAAGATGAAATGTGTCTTCATGTACATTGCTATGTGAGCGGTCCTAATTCTTTGCTTGATCTTACTGCTGAGTTTAGATACCACATTTTCTCCAAAGAATTGCCTCTTGTACTTGAATCTGTCTTATATGGAGATTCAATTCTATTTAGGGAGAATCCCGAGCTGCTAGATGCCTTAGTCAGGGTATATTTCCATTCCAGTTCACAAAAGTATAATCGACTCGAATGCTGGGGGCCACTCAAGGATGCTGTGCAGGGGAGGCATCATCATATGCAAGGGCTCCTAAGGGCAAGCCAGGATGTGTCCTCTCCTAAAAAGTTGAGAACTCCCAAATCAATTTTTCAAGCTCTCTTTGCCTTCCTTCTCTGA MAFHCARYSFSPSPSKPKFKLVLGNKPAVLFSSLRSTRASYNTLVSEAVRILVPPARFEASKLKVEFTREVNKCAGITPRTYILSHCDFTANLTLTISDVINLDQLRGWYNKDDVVAEWKKVKDEMCLHVHCYVSGPNSLLDLTAEFRYHIFSKELPLVLESVLYGDSILFRENPELLDALVRVYFHSSSQKYNRLECWGPLKDAVQGRHHHMQGLLRASQDVSSPKKLRTPKSIFQALFAFLL Homology
BLAST of Csor.00g289050 vs. ExPASy Swiss-Prot
Match: Q94AQ9 (Magnesium dechelatase SGRL, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SGRL PE=1 SV=1) HSP 1 Score: 282.3 bits (721), Expect = 5.1e-75 Identity = 145/218 (66.51%), Postives = 172/218 (78.90%), Query Frame = 0
BLAST of Csor.00g289050 vs. ExPASy Swiss-Prot
Match: Q0J8Q3 (Protein STAY-GREEN LIKE, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0692600 PE=2 SV=1) HSP 1 Score: 190.7 bits (483), Expect = 2.0e-47 Identity = 103/208 (49.52%), Postives = 132/208 (63.46%), Query Frame = 0
BLAST of Csor.00g289050 vs. ExPASy Swiss-Prot
Match: A9YF60 (Protein STAY-GREEN homolog, chloroplastic OS=Capsicum annuum OX=4072 GN=SGR PE=1 SV=2) HSP 1 Score: 187.6 bits (475), Expect = 1.7e-46 Identity = 101/203 (49.75%), Postives = 130/203 (64.04%), Query Frame = 0
BLAST of Csor.00g289050 vs. ExPASy Swiss-Prot
Match: Q4JFW8 (Protein STAY-GREEN 1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SGR1 PE=1 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 1.9e-45 Identity = 99/193 (51.30%), Postives = 127/193 (65.80%), Query Frame = 0
BLAST of Csor.00g289050 vs. ExPASy Swiss-Prot
Match: A2Z3E5 (Protein STAY-GREEN, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=SGR PE=3 SV=1) HSP 1 Score: 182.6 bits (462), Expect = 5.5e-45 Identity = 92/160 (57.50%), Postives = 115/160 (71.88%), Query Frame = 0
BLAST of Csor.00g289050 vs. NCBI nr
Match: XP_022960677.1 (protein STAY-GREEN LIKE, chloroplastic [Cucurbita moschata] >XP_023546959.1 protein STAY-GREEN LIKE, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG6602142.1 Magnesium dechelatase SGRL, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032831.1 Protein STAY-GREEN LIKE, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 498 bits (1281), Expect = 1.01e-177 Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
BLAST of Csor.00g289050 vs. NCBI nr
Match: XP_022989801.1 (protein STAY-GREEN LIKE, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 496 bits (1277), Expect = 4.12e-177 Identity = 243/244 (99.59%), Postives = 243/244 (99.59%), Query Frame = 0
BLAST of Csor.00g289050 vs. NCBI nr
Match: XP_022141380.1 (protein STAY-GREEN LIKE, chloroplastic [Momordica charantia]) HSP 1 Score: 457 bits (1177), Expect = 7.25e-162 Identity = 224/244 (91.80%), Postives = 232/244 (95.08%), Query Frame = 0
BLAST of Csor.00g289050 vs. NCBI nr
Match: XP_038884235.1 (magnesium dechelatase SGRL, chloroplastic [Benincasa hispida]) HSP 1 Score: 450 bits (1157), Expect = 8.11e-159 Identity = 220/244 (90.16%), Postives = 227/244 (93.03%), Query Frame = 0
BLAST of Csor.00g289050 vs. NCBI nr
Match: XP_022939533.1 (protein STAY-GREEN LIKE, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 441 bits (1135), Expect = 2.53e-155 Identity = 215/244 (88.11%), Postives = 225/244 (92.21%), Query Frame = 0
BLAST of Csor.00g289050 vs. ExPASy TrEMBL
Match: A0A6J1H833 (protein STAY-GREEN LIKE, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111461394 PE=3 SV=1) HSP 1 Score: 498 bits (1281), Expect = 4.89e-178 Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
BLAST of Csor.00g289050 vs. ExPASy TrEMBL
Match: A0A6J1JL65 (protein STAY-GREEN LIKE, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486879 PE=3 SV=1) HSP 1 Score: 496 bits (1277), Expect = 1.99e-177 Identity = 243/244 (99.59%), Postives = 243/244 (99.59%), Query Frame = 0
BLAST of Csor.00g289050 vs. ExPASy TrEMBL
Match: A0A6J1CHX2 (protein STAY-GREEN LIKE, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011794 PE=3 SV=1) HSP 1 Score: 457 bits (1177), Expect = 3.51e-162 Identity = 224/244 (91.80%), Postives = 232/244 (95.08%), Query Frame = 0
BLAST of Csor.00g289050 vs. ExPASy TrEMBL
Match: A0A6J1FLW5 (protein STAY-GREEN LIKE, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445411 PE=3 SV=1) HSP 1 Score: 441 bits (1135), Expect = 1.23e-155 Identity = 215/244 (88.11%), Postives = 225/244 (92.21%), Query Frame = 0
BLAST of Csor.00g289050 vs. ExPASy TrEMBL
Match: A0A6J1JU75 (protein STAY-GREEN LIKE, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111489764 PE=3 SV=1) HSP 1 Score: 442 bits (1136), Expect = 7.71e-155 Identity = 214/244 (87.70%), Postives = 225/244 (92.21%), Query Frame = 0
BLAST of Csor.00g289050 vs. TAIR 10
Match: AT1G44000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11911.1); Has 216 Blast hits to 212 proteins in 76 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 282.3 bits (721), Expect = 3.6e-76 Identity = 145/218 (66.51%), Postives = 172/218 (78.90%), Query Frame = 0
BLAST of Csor.00g289050 vs. TAIR 10
Match: AT4G22920.1 (non-yellowing 1 ) HSP 1 Score: 179.1 bits (453), Expect = 4.3e-45 Identity = 102/214 (47.66%), Postives = 135/214 (63.08%), Query Frame = 0
BLAST of Csor.00g289050 vs. TAIR 10
Match: AT4G11910.1 (INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: non-yellowing 1 (TAIR:AT4G22920.1); Has 206 Blast hits to 202 proteins in 67 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 174.1 bits (440), Expect = 1.4e-43 Identity = 98/204 (48.04%), Postives = 127/204 (62.25%), Query Frame = 0
BLAST of Csor.00g289050 vs. TAIR 10
Match: AT4G11911.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 163.3 bits (412), Expect = 2.4e-40 Identity = 94/200 (47.00%), Postives = 122/200 (61.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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