Csor.00g288820 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g288820
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	pistil-specific extensin-like protein
Location	Csor_Chr04: 18043628 .. 18043993 (+)
RNA-Seq Expression	Csor.00g288820
Synteny	Csor.00g288820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTTCAAGTCCGCCGTCGGGTTCTGGATCGGATCATCCGCCGCTAAAACAGCCCCAAATACTCCAAATCTCCCAACAATCCCGGAATATCAAGAAGCCCCCGCTGCCGCCGGGAGCCCCCAAACCCCGGCCGCCGCTGCTAACGGTCAAAAAGAAGACCGAAACTCCGCCCTCCTACCACCCTTTTCCTCCTCTTCCTCCTTCTTCTTCGACGGTCCGGCCGGCGGAAGTCATGCCGTTGCCGGGTTCTTCCGATTACAATATTATTGCTCCGCCGTTGCCCATGTTCAAGACTCCTCCACCCCACCTTCACTACAGACCGGAAATTCCAGACTCCGACGCCGACGCCGACGCCGACTAA

mRNA sequence

ATGAGTTCTTCAAGTCCGCCGTCGGGTTCTGGATCGGATCATCCGCCGCTAAAACAGCCCCAAATACTCCAAATCTCCCAACAATCCCGGAATATCAAGAAGCCCCCGCTGCCGCCGGGAGCCCCCAAACCCCGGCCGCCGCTGCTAACGGTCAAAAAGAAGACCGAAACTCCGCCCTCCTACCACCCTTTTCCTCCTCTTCCTCCTTCTTCTTCGACGGTCCGGCCGGCGGAAGTCATGCCGTTGCCGGGTTCTTCCGATTACAATATTATTGCTCCGCCGTTGCCCATGTTCAAGACTCCTCCACCCCACCTTCACTACAGACCGGAAATTCCAGACTCCGACGCCGACGCCGACGCCGACTAA

Coding sequence (CDS)

ATGAGTTCTTCAAGTCCGCCGTCGGGTTCTGGATCGGATCATCCGCCGCTAAAACAGCCCCAAATACTCCAAATCTCCCAACAATCCCGGAATATCAAGAAGCCCCCGCTGCCGCCGGGAGCCCCCAAACCCCGGCCGCCGCTGCTAACGGTCAAAAAGAAGACCGAAACTCCGCCCTCCTACCACCCTTTTCCTCCTCTTCCTCCTTCTTCTTCGACGGTCCGGCCGGCGGAAGTCATGCCGTTGCCGGGTTCTTCCGATTACAATATTATTGCTCCGCCGTTGCCCATGTTCAAGACTCCTCCACCCCACCTTCACTACAGACCGGAAATTCCAGACTCCGACGCCGACGCCGACGCCGACTAA

Protein sequence

MSSSSPPSGSGSDHPPLKQPQILQISQQSRNIKKPPLPPGAPKPRPPLLTVKKKTETPPSYHPFPPLPPSSSTVRPAEVMPLPGSSDYNIIAPPLPMFKTPPPHLHYRPEIPDSDADADAD

Homology

[Close]

BLAST of Csor.00g288820 vs. NCBI nr
Match: KAG6602165.1 (hypothetical protein SDJN03_07398, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238 bits (606), Expect = 7.56e-79
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MSSSSPPSGSGSDHPPLKQPQILQISQQSRNIKKPPLPPGAPKPRPPLLTVKKKTETPPS 60
           MSSSSPPSGSGSDHPPLKQPQILQISQQSRNIKKPPLPPGAPKPRPPLLTVKKKTETPPS
Sbjct: 1   MSSSSPPSGSGSDHPPLKQPQILQISQQSRNIKKPPLPPGAPKPRPPLLTVKKKTETPPS 60

Query: 61  YHPFPPLPPSSSTVRPAEVMPLPGSSDYNIIAPPLPMFKTPPPHLHYRPEIPDSDADADA 120
           YHPFPPLPPSSSTVRPAEVMPLPGSSDYNIIAPPLPMFKTPPPHLHYRPEIPDSDADADA
Sbjct: 61  YHPFPPLPPSSSTVRPAEVMPLPGSSDYNIIAPPLPMFKTPPPHLHYRPEIPDSDADADA 120

[Close]

BLAST of Csor.00g288820 vs. NCBI nr
Match: XP_022959588.1 (pistil-specific extensin-like protein [Cucurbita moschata])

HSP 1 Score: 228 bits (581), Expect = 4.32e-75
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MSSSSPPSGSGSDHPPLKQPQILQISQQSRNIKKPPLPPGAPKPRPPLLTVKKKTETPPS 60
           MSSSSPPSGSGSDHPPLKQPQILQISQQSRNIKKPPLPPGAPKPRPPLLTVKKKTETPPS
Sbjct: 1   MSSSSPPSGSGSDHPPLKQPQILQISQQSRNIKKPPLPPGAPKPRPPLLTVKKKTETPPS 60

Query: 61  YHPFPPLPPSSSTVRPAEVMPLPGSSDYNIIAPPLPMFKTPPPHLHYRPEIPDSDAD 117
           YHPFPPLPPSSSTVRPAEVMPLPGSSDYNIIAPPLPMFKTPPP+LHYRPEIPDSDAD
Sbjct: 61  YHPFPPLPPSSSTVRPAEVMPLPGSSDYNIIAPPLPMFKTPPPNLHYRPEIPDSDAD 117

[Close]

BLAST of Csor.00g288820 vs. ExPASy TrEMBL
Match: A0A6J1H6D7 (pistil-specific extensin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111460614 PE=4 SV=1)

HSP 1 Score: 228 bits (581), Expect = 2.09e-75
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MSSSSPPSGSGSDHPPLKQPQILQISQQSRNIKKPPLPPGAPKPRPPLLTVKKKTETPPS 60
           MSSSSPPSGSGSDHPPLKQPQILQISQQSRNIKKPPLPPGAPKPRPPLLTVKKKTETPPS
Sbjct: 1   MSSSSPPSGSGSDHPPLKQPQILQISQQSRNIKKPPLPPGAPKPRPPLLTVKKKTETPPS 60

Query: 61  YHPFPPLPPSSSTVRPAEVMPLPGSSDYNIIAPPLPMFKTPPPHLHYRPEIPDSDAD 117
           YHPFPPLPPSSSTVRPAEVMPLPGSSDYNIIAPPLPMFKTPPP+LHYRPEIPDSDAD
Sbjct: 61  YHPFPPLPPSSSTVRPAEVMPLPGSSDYNIIAPPLPMFKTPPPNLHYRPEIPDSDAD 117

The following BLAST results are available for this feature:

BLAST of Csor.00g288820 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g288820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602165.1	7.56e-79	100.00	hypothetical protein SDJN03_07398, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022959588.1	4.32e-75	99.15	pistil-specific extensin-like protein [Cucurbita moschata]	[more]

BLAST of Csor.00g288820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6D7	2.09e-75	99.15	pistil-specific extensin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111460...	[more]

BLAST of Csor.00g288820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g288820.m01	Csor.00g288820.m01	mRNA