Csor.00g288430 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g288430
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 18241978 .. 18244241 (-)
RNA-Seq Expression	Csor.00g288430
Synteny	Csor.00g288430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCTACCCCCTCCGAAGCCGGAATTGGAGATATCGCCGGCAGCCACCGCTTCAGTTCCGAGCCGATACAGCCGGAGCTAGAAAGTCCTCACCCATGGAAGCCATGGCAAGTGGTTGAAAGTAGAGAGTGTTATTGCCGGAGCTTGGTCGAACTGCTTCAATGGCGTTTATGGGATGGGGGAAAAATGTGAGTGAAAGAGAAAGAGGAAGAGGGGGGCAGTGTGCAAGTGCATGCTATATTATCGAGACGTGGGATTCCAACTTCTTTCTCTATTTATTGTTTTTAAATTGAAAACAATCATGACTTTATTTTGCTGCAGTCATCAGCTTATTTGGGCACTATTTGTATTTTTTTCGAAGGGTATTTATGTCTTTTCATAACATTTATAGAGTCTACTTTAGGCCATAGGTACCCCGAGCAAAAACGAATTTATTTCCCTCACTAGGTATCGACACCCGACACTAATGAGCTTAGGAAAATATTAGCTTCAACTCGCAATAACTTTATTGGTTATTTCTATGTTATATTTGTATTTTTTCAAGGGCATTTATGTCTTTTCCCAACATTTATAGAGTCTATTTTAGGTCATAGGTACCCGGGCAAAAATGAGTTTATTTCCCTCACTAGGTATCGACCCACTGTTAGATGAACACAACCTTCACAATAACCTTGCTATTTCTACGTTCTATTTGTATGTTTTTCAAGGGTATTTATGTCTTTTCCTAACATTTATAGAGTCTATTTTAGGCCATAGGTACCCCGAGCAAAAATGGGTTTATTTCCCTCACTGAGGTATCGACACCCAATACTAATGAGCCCAGTTAGATGAACACAACTCTCCACGATGATATGATATTGTCCATTTTGAGCATAACCCTCCTCGCTTTATTTTAGGCTTCCCCAAAAGACCTCATACCAATTGAAAGAATATTTTTTAATTAAAAACTCATGATCATTCTCTAAATTAGCGGATATGGGACTTTCATCCAACACACCTAACTGTAATCTTGACAACACAATTGTCCTATCGATACTGACGCACTTGTTCAGGTCCAAATTTTCTCGTCCTTATATACATTGAACTACTTTTAGAAGAACAAAAGTCAAACATAAGTTTAGTCGTATTAAAAAACTTTTAAATTGAACTCGCTAACATATAAACTATCTGGGCTCCATAATAATTCAAACAATCGTAGAAGGTTACGAGTCGGGTTGAGAGAGTTTAATAGATCGATACAACTGAAACCATTAATAACACCCAAAACGACAAAAAAAAATTAAGTTAACTACGTCAGACACAAGAACATAAACGACGAATGTAACCTTCCCACCGAAATCCTTCCAAACATTTAAATAACTCGGTGAGAAAGTAAAATCAATTATGGTTCACAAACGGTGAATCATAAATTTTATCGTTAACGTCATTAAACTCAATAAAGACTAAGATATATCTATCGAACAAACTTTGCTTAATTTGATCGAACGTAATAAAAGTAGTACGATATAGGGGTAAAATGGGAATTTCATCCAGCCTAGGGCAGGCGGAAGGAGAATCAAAGATTTCAGGGCCATGTCCAAGCCTATTGCCTTGGAAAGACAATTATAAAAATAAAAAACCCACCAAGCCTGCAAGGGCACTTCGTACATTGTGAAAACTTTTAGGGCAGTGGCTTTTATGTAATTTAACGCATTGCCCATGTTCGGGTAGGGGCTTTTCCGTAATTTAACCTATTTATAACAAATCCCCTTGACGCGGCCTCAGCCCTTTGGATTATATTATTATATTTGAAGGGTAGGCGTCATAAGGGAAACAAGTTCAGTTCCAAGGGTATAATCGACATTTCGTAGACAAGTTAATTTAATTTCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTTTACTGCGTCATTAATTACCTTCATCCGTGAAAATACGAGGATGAGGTCCAGGTTAGTTTAGTTACCGAGGTAAACGTGGTGGGTTTGTTTTGGGAAGGGAGGAAAAAAATAAATAAATAATAAATAATAAATAATAATTCTAATTATTATTTTAATTTTTAGGGCACAGTGAACGATTAGGGCGTGTTTGGGCTTTTGCTTTTATTGTTTTATTATGTTTACTTTTAGCCGCAAGGCTGTTTTGGAGCGAAAATTTGAAAATAATATTTAGAAAGACGATTTTGCCCCTATGTGTTTTGATTTCCAGGGGTAATTTTGGGATTTCACTTGTGTGTGCGGCGGTGAGAAGATTAAACCCCTAA

mRNA sequence

ATGAAACCTACCCCCTCCGAAGCCGGAATTGGAGATATCGCCGGCAGCCACCGCTTCAGTTCCGAGCCGATACAGCCGGAGCTAGAAAGTCCTCACCCATGGAAGCCATGGCAAGTGGTTGAAAGTAGAGAGTGTTATTGCCGGAGCTTGGTCGAACTGCTTCAATGGCGTTTATGGGATGGGGGAAAAATGGGTAATTTTGGGATTTCACTTGTGTGTGCGGCGGTGAGAAGATTAAACCCCTAA

Coding sequence (CDS)

ATGAAACCTACCCCCTCCGAAGCCGGAATTGGAGATATCGCCGGCAGCCACCGCTTCAGTTCCGAGCCGATACAGCCGGAGCTAGAAAGTCCTCACCCATGGAAGCCATGGCAAGTGGTTGAAAGTAGAGAGTGTTATTGCCGGAGCTTGGTCGAACTGCTTCAATGGCGTTTATGGGATGGGGGAAAAATGGGTAATTTTGGGATTTCACTTGTGTGTGCGGCGGTGAGAAGATTAAACCCCTAA

Protein sequence

MKPTPSEAGIGDIAGSHRFSSEPIQPELESPHPWKPWQVVESRECYCRSLVELLQWRLWDGGKMGNFGISLVCAAVRRLNP

Homology

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BLAST of Csor.00g288430 vs. NCBI nr
Match: KAG6602203.1 (hypothetical protein SDJN03_07436, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181 bits (459), Expect = 1.09e-57
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MKPTPSEAGIGDIAGSHRFSSEPIQPELESPHPWKPWQVVESRECYCRSLVELLQWRLWD 60
          MKPTPSEAGIGDIAGSHRFSSEPIQPELESPHPWKPWQVVESRECYCRSLVELLQWRLWD
Sbjct: 1  MKPTPSEAGIGDIAGSHRFSSEPIQPELESPHPWKPWQVVESRECYCRSLVELLQWRLWD 60

Query: 61 GGKMGNFGISLVCAAVRRLNP 81
          GGKMGNFGISLVCAAVRRLNP
Sbjct: 61 GGKMGNFGISLVCAAVRRLNP 81

The following BLAST results are available for this feature:

BLAST of Csor.00g288430 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g288430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602203.1	1.09e-57	100.00	hypothetical protein SDJN03_07436, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g288430 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g288430 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g288430.m01	Csor.00g288430.m01	mRNA