Csor.00g287530 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g287530
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr20: 15238102 .. 15239301 (-)
RNA-Seq Expression	Csor.00g287530
Synteny	Csor.00g287530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGAAAGACCTTGCTTTTCACTCCAAGATCGCCGATGTTCGTGCAAGAATTTGACAAACGAAATCCTCGGGGCAAAGTGGGTTTGGTTTCTCAACTTCAATAGCCCATATCCTCTCAATCCAAGCTTGTTCCTCCTCACATCGACCCTAATCTTGCCTTAAACTACTCTAATTCCGCCTAATTACGTTTTTCAGAAAAAACATGAGATTTGGTTTGACGTAAAGCGCAAAAACTTGTGATGCTTAAGCGTGACAAATGGTTTGATGCTTAAGCGTAAAGGTAAGTTAAACTCACACTTCTGTCACCATCTCTTATTGCAGTCGATAACGTGCAATATGCATCCATACCTTACAAGTGCGTGACCTACTAGTCCCATGTGATGGACTATATGCATCAATATCCGAGGTTTATAATATGAAATTTTATGGATTAAATTGAATAATGAGTTTTTAAAAATTAATTTTAGGGAACAAAAACATACAATTATATATATATATATATTTATTTATTTTAATTTTATAATTATTTTGTTGATTGCTTATTGTTCGTAATTTTTAAAAATAAATAAATAAATATTTTAAGAATTGACATTTTATTCTATTAAAAATAAATATTTGACGAAAGAATTATTTAAATAAAATAATTGGGTCGAGTCAACATCGAACGTATCAAAGACAAATTTAAGCTAAACGACAAAAATGTCCCTTTCCATGATTTTATTATTTAATTATTTAATTTTTTAGAATTTTGTTTTTAAATCTTCTTGTTGTTCTTGGTTTAGGTTTAGGGTTGGCTCTCTGACTTCCAGACTCCCCGCCCTCCATCACAACCGACGCCGCCCTCCACCATCCACTCCTTCGCTGCAGAAGCCGTCGTCGTCGTCGTCTCCGCCTTTACCGGCATCCACCAGCCAGACCTCAGCGGCAGAAGTCGTCGCCACTGCTGTCGCTACCGCCTCTTTTCTTTCTTCTATCTCTATCTCCCTCTCTGCTGCAACCGCACGTCGGCGCCAATCAAAACAATTATTCCTAATTAGCGGGGTAATCTTACCTTTATTCCGAATTGGTTTGATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGATTATTTTGTTTGAATCTTTTATTCAATCGGTCTTATGTTTTCAGCTTTGAACCTCGTTCTGTTCGCAGGCCTCACTGTGGCAATAG

mRNA sequence

ATGAACGAAAGACCTTGCTTTTCACTCCAAGATCGCCGATGTTCGTGCAAGAATTTGACAAACGAAATCCTCGGGGCAAAGTTTAGGGTTGGCTCTCTGACTTCCAGACTCCCCGCCCTCCATCACAACCGACGCCGCCCTCCACCATCCACTCCTTCGCTGCAGAAGCCGTCGTCGTCGTCGTCTCCGCCTTTACCGGCATCCACCAGCCAGACCTCAGCGGCAGAAGTCGTCGCCACTGCTGTCGCTACCGCCTCTTTTCTTTCTTCTATCTCTATCTCCCTCTCTGCTGCAACCGCACGTCGGCGCCAATCAAAACAATTATTCCTAATTAGCGGGGCCTCACTGTGGCAATAG

Coding sequence (CDS)

ATGAACGAAAGACCTTGCTTTTCACTCCAAGATCGCCGATGTTCGTGCAAGAATTTGACAAACGAAATCCTCGGGGCAAAGTTTAGGGTTGGCTCTCTGACTTCCAGACTCCCCGCCCTCCATCACAACCGACGCCGCCCTCCACCATCCACTCCTTCGCTGCAGAAGCCGTCGTCGTCGTCGTCTCCGCCTTTACCGGCATCCACCAGCCAGACCTCAGCGGCAGAAGTCGTCGCCACTGCTGTCGCTACCGCCTCTTTTCTTTCTTCTATCTCTATCTCCCTCTCTGCTGCAACCGCACGTCGGCGCCAATCAAAACAATTATTCCTAATTAGCGGGGCCTCACTGTGGCAATAG

Protein sequence

MNERPCFSLQDRRCSCKNLTNEILGAKFRVGSLTSRLPALHHNRRRPPPSTPSLQKPSSSSSPPLPASTSQTSAAEVVATAVATASFLSSISISLSAATARRRQSKQLFLISGASLWQ

Homology

[Close]

BLAST of Csor.00g287530 vs. NCBI nr
Match: KAG6571331.1 (hypothetical protein SDJN03_30246, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215 bits (547), Expect = 6.05e-70
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MNERPCFSLQDRRCSCKNLTNEILGAKFRVGSLTSRLPALHHNRRRPPPSTPSLQKPSSS 60
           MNERPCFSLQDRRCSCKNLTNEILGAKFRVGSLTSRLPALHHNRRRPPPSTPSLQKPSSS
Sbjct: 1   MNERPCFSLQDRRCSCKNLTNEILGAKFRVGSLTSRLPALHHNRRRPPPSTPSLQKPSSS 60

Query: 61  SSPPLPASTSQTSAAEVVATAVATASFLSSISISLSAATARRRQSKQLFLISGASLWQ 118
           SSPPLPASTSQTSAAEVVATAVATASFLSSISISLSAATARRRQSKQLFLISGASLWQ
Sbjct: 61  SSPPLPASTSQTSAAEVVATAVATASFLSSISISLSAATARRRQSKQLFLISGASLWQ 118

[Close]

BLAST of Csor.00g287530 vs. NCBI nr
Match: KAG7011106.1 (RNA polymerase I-specific transcription initiation factor RRN3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148 bits (374), Expect = 9.22e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 27  KFRVGSLTSRLPALHHNRRRPPPSTPSLQKPSSSSSPPLPASTSQTSAAEVVATAVATAS 86
           KFRVGSLTSRLPALHHNRRRPPPSTPSLQKPSSSSSPPLPASTSQTSAAEVVATAVATAS
Sbjct: 27  KFRVGSLTSRLPALHHNRRRPPPSTPSLQKPSSSSSPPLPASTSQTSAAEVVATAVATAS 86

Query: 87  FLSSISISLSAATARRRQSKQLFLISG 113
           FLSSISISLSAATARRRQSKQLFLISG
Sbjct: 87  FLSSISISLSAATARRRQSKQLFLISG 113

The following BLAST results are available for this feature:

BLAST of Csor.00g287530 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g287530 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571331.1	6.05e-70	100.00	hypothetical protein SDJN03_30246, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011106.1	9.22e-39	100.00	RNA polymerase I-specific transcription initiation factor RRN3, partial [Cucurbi...	[more]

BLAST of Csor.00g287530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g287530 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g287530.m01	Csor.00g287530.m01	mRNA