Csor.00g287360 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g287360
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionCoiled-coil domain-containing protein 18, putative isoform 2
LocationCsor_Chr20: 15402302 .. 15404000 (+)
RNA-Seq ExpressionCsor.00g287360
SyntenyCsor.00g287360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAGATAAGGTTGATTGAAGCCATAATGGGAAGAATGGATAGGAAATCATCCATTGAAAGAGAGCCCAGGACTCTCAAAATGAACCAAATCCAATTTGCAAGAGTAAGTATGGAAGGCTTAATGATTGTGTGTGTGTGTGTGTGTGTTTTTGGTTTGAGTAAGGCTTTCAGATGAGCAATGGTTTTGTGATGAACTGCAGGAAGCAGCGCTGTACGTGATGAACACAACTAGCATGGAAGAAGCAATCAAGATCTTCACAGAGGTAATATCATACACAAATTCCGCTATCAATCATTAACAGATTCCGTATTGGTTGGAGTGGGTAACGAAACATTTTTTATAAGGGTATGAAAATCGCTCCATAATACACGCATTTTAAAATTGTGAGACGGATGACGATACGTAATGGGCCAAAACAGACATATTGCTCTATTAGCATTGAGCTTGGGCTATTACAAATGGTATCTGTGTCAGCGAGGGCTCTCTCTGGCCCATAAGAGGGTGAATTGGTAACGGTACGTAACGGGCCAAAGCGGACACATCTAGGTGGGCTTGGGCTATTACAAATGGTATCTGTGTCAGCGAGGACTCTCTCTGGCCCATAAAAAGGTGAATTGGTAACGGTACGTAACAGGCCAAAGCGGACACATCTAGTTGGGCTGGGGTTATTACAAATGGTATCTGTGTCAGCGAGGTGCTCTCCCTGGCCCCTAAGAGGGTGAATTGTGAGATCCCACATTGGTGGGGAGAGGAACAAAACATTCCTTATAAGGGTGTGAAAATCTCTCCCTAGGTTGGTAGCGGTACGTAACGGGCCAAAGCGGACACATCTAGGTGGGCTTGGGCTATTACAAATGGTTTCAAAGCCAGACAACGGACAGTGTGTCAATGAAGACGCTGACCCTCTAAGGAGGTGGATTGTGAGATCCCATATTCTTTGTAGAGGAAGAACAAAGCATTCCTTATAACAGTGTGGAAACCTCTCCCTAGTAGATGCCTTCTGAAACCCCGAGGCTGACAAAAGCGGACAATATCTACTAGCGGCGGGCTTGGACTATTACAAATGGTACCAGAGCCAGACACCGAGTGATGAGCCAACAAGGACGCTGCTCCCAAAGGGGTGGATTTCGAAATCTCATTCGTTGGGGACGGAAATGAAGCATTCCTTATAAGAGTATGGAAACCTCTCCCTAGTAGACACATTTTAAAACTTTGAGGTTGACAGCGATACATAAGGAGTCAAAGCGGACAATATCTACTAGCGGTGGGTTTGAGCTATTACAAATGGTATCAGAGTCACAGAGTCCATACCGTGTAGTGTGTCAGCGAGGATGCTGACCCTCAAAGTGGTGGATTGTGAGATTCCACATTGGTTGGAGAGGGGAACGGAACATTCTTACCTCTCTCTAATAAACACGTTTAAAACTATGAGGCTGACGACGTTACCTAACGGACCAAAACGAACCATATTTACTAGCGGTGAAATGAAGCTATTACCATTACTTTAATATAAAAAATGGAAAAGGGTTATATGATGGCGATGTAGTGGAAAATGCAGGGATTAGAAGCAGCGGAATGCAAAGCAATACGAGATGAAGATGAATCCATAATGGAGAATTGGTTCCATGAACAAGAAGCTGATGAGCTTCCACCTCTTTATCAGCTTAGAGACATTGTCACTGCCCCTTTTTAG

mRNA sequence

ATGGATAAGATAAGGTTGATTGAAGCCATAATGGGAAGAATGGATAGGAAATCATCCATTGAAAGAGAGCCCAGGACTCTCAAAATGAACCAAATCCAATTTGCAAGAGAAGCAGCGCTGTACGTGATGAACACAACTAGCATGGAAGAAGCAATCAAGATCTTCACAGAGGGATTAGAAGCAGCGGAATGCAAAGCAATACGAGATGAAGATGAATCCATAATGGAGAATTGGTTCCATGAACAAGAAGCTGATGAGCTTCCACCTCTTTATCAGCTTAGAGACATTGTCACTGCCCCTTTTTAG

Coding sequence (CDS)

ATGGATAAGATAAGGTTGATTGAAGCCATAATGGGAAGAATGGATAGGAAATCATCCATTGAAAGAGAGCCCAGGACTCTCAAAATGAACCAAATCCAATTTGCAAGAGAAGCAGCGCTGTACGTGATGAACACAACTAGCATGGAAGAAGCAATCAAGATCTTCACAGAGGGATTAGAAGCAGCGGAATGCAAAGCAATACGAGATGAAGATGAATCCATAATGGAGAATTGGTTCCATGAACAAGAAGCTGATGAGCTTCCACCTCTTTATCAGCTTAGAGACATTGTCACTGCCCCTTTTTAG

Protein sequence

MDKIRLIEAIMGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAAECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF
Homology
BLAST of Csor.00g287360 vs. NCBI nr
Match: KAG6571348.1 (hypothetical protein SDJN03_30263, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197 bits (500), Expect = 2.57e-63
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MDKIRLIEAIMGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLE 60
           MDKIRLIEAIMGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLE
Sbjct: 1   MDKIRLIEAIMGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLE 60

Query: 61  AAECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF 101
           AAECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF
Sbjct: 61  AAECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF 101

BLAST of Csor.00g287360 vs. NCBI nr
Match: XP_023512402.1 (uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo] >KAG7011119.1 hypothetical protein SDJN02_27917, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176 bits (445), Expect = 4.64e-55
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 0

Query: 11  MGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAAECKAIRDE 70
           MGRMDRKSSIE EPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEA ECKAIRDE
Sbjct: 1   MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDE 60

Query: 71  DESIMENWFHEQEADELPPLYQLRDIVTAPF 101
           DESIMENWFHEQEADELPPLYQLRDIVTAPF
Sbjct: 61  DESIMENWFHEQEADELPPLYQLRDIVTAPF 91

BLAST of Csor.00g287360 vs. NCBI nr
Match: XP_008460897.1 (PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo])

HSP 1 Score: 138 bits (348), Expect = 2.97e-40
Identity = 70/92 (76.09%), Postives = 82/92 (89.13%), Query Frame = 0

Query: 11  MGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAAECKAIRDE 70
           MG +DRKSSIE EPRTLKMNQIQFAREAALYV+NTT++EEA+KIFTEGL+  ECKAI DE
Sbjct: 1   MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 71  D-ESIMENWFHEQEADELPPLYQLRDIVTAPF 101
           D +SIM+NW+H++E DEL P  QLRDIV+APF
Sbjct: 61  DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

BLAST of Csor.00g287360 vs. NCBI nr
Match: XP_011649401.1 (uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical protein Csa_006615 [Cucumis sativus])

HSP 1 Score: 133 bits (335), Expect = 2.84e-38
Identity = 66/92 (71.74%), Postives = 81/92 (88.04%), Query Frame = 0

Query: 11  MGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAAECKAIRDE 70
           MG +DRKSSIE EPRTLKM+QIQFAREAALYVMNT ++EEA+KIFTEGL+  ECKAI ++
Sbjct: 1   MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 71  DESIMENWFHEQEADE-LPPLYQLRDIVTAPF 101
            +SI++NW+H++E DE L P YQLRDIV+APF
Sbjct: 61  KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

BLAST of Csor.00g287360 vs. NCBI nr
Match: XP_038902606.1 (uncharacterized protein LOC120089256 [Benincasa hispida])

HSP 1 Score: 130 bits (328), Expect = 3.12e-37
Identity = 67/91 (73.63%), Postives = 81/91 (89.01%), Query Frame = 0

Query: 11  MGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAAECKAIRDE 70
           MG +DRKSSIE EPRTL+M+QIQFAREAALYV+NTT++EEA+KIFTEGL+  ECKAI+D+
Sbjct: 1   MGNIDRKSSIENEPRTLRMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIQDK 60

Query: 71  DESIMENWFHEQEADELPPLYQLRDIVTAPF 101
           D SIM N++HE+E DEL  LYQ RDIV+APF
Sbjct: 61  D-SIMGNYYHEEEDDELQSLYQPRDIVSAPF 90

BLAST of Csor.00g287360 vs. ExPASy TrEMBL
Match: A0A1S3CDH2 (uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=4 SV=1)

HSP 1 Score: 138 bits (348), Expect = 1.44e-40
Identity = 70/92 (76.09%), Postives = 82/92 (89.13%), Query Frame = 0

Query: 11  MGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAAECKAIRDE 70
           MG +DRKSSIE EPRTLKMNQIQFAREAALYV+NTT++EEA+KIFTEGL+  ECKAI DE
Sbjct: 1   MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 71  D-ESIMENWFHEQEADELPPLYQLRDIVTAPF 101
           D +SIM+NW+H++E DEL P  QLRDIV+APF
Sbjct: 61  DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

BLAST of Csor.00g287360 vs. ExPASy TrEMBL
Match: A0A0A0LQ89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1)

HSP 1 Score: 133 bits (335), Expect = 1.38e-38
Identity = 66/92 (71.74%), Postives = 81/92 (88.04%), Query Frame = 0

Query: 11  MGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAAECKAIRDE 70
           MG +DRKSSIE EPRTLKM+QIQFAREAALYVMNT ++EEA+KIFTEGL+  ECKAI ++
Sbjct: 1   MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 71  DESIMENWFHEQEADE-LPPLYQLRDIVTAPF 101
            +SI++NW+H++E DE L P YQLRDIV+APF
Sbjct: 61  KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

BLAST of Csor.00g287360 vs. ExPASy TrEMBL
Match: A0A6J1G887 (uncharacterized protein LOC111451648 OS=Cucurbita moschata OX=3662 GN=LOC111451648 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 7.18e-36
Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 0

Query: 11  MGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAAECKAIRDE 70
           M R+DRKSSIE EPRTLKM+QIQFAREAALYV+NT+S+EEA++IFTEGLEA ECK I D 
Sbjct: 1   MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR 60

Query: 71  DESIMENWFHEQEADELPPLYQLRDIVTAPF 101
           D S M+N  HE+E DELP  Y+L DIV+APF
Sbjct: 61  DSS-MQNCCHEEEVDELPSFYRLPDIVSAPF 90

BLAST of Csor.00g287360 vs. ExPASy TrEMBL
Match: A0A6J1DBC1 (uncharacterized protein LOC111018915 OS=Momordica charantia OX=3673 GN=LOC111018915 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 1.70e-33
Identity = 61/95 (64.21%), Postives = 78/95 (82.11%), Query Frame = 0

Query: 8   EAIMGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAAECKAI 67
           E IMGR+DRKSSIE EPRTLKM+QIQFAREAALY++NTT+++EA++IFTEGLE  ECKA 
Sbjct: 3   EEIMGRIDRKSSIENEPRTLKMHQIQFAREAALYILNTTTIDEAMRIFTEGLETVECKAT 62

Query: 68  RDED-ESIMENWFHEQEADELPPLYQLRDIVTAPF 101
           RD +     +  ++E+E  +L PLY+ RDIV+APF
Sbjct: 63  RDRNINGRKKQVYYEEELSDLEPLYRFRDIVSAPF 97

BLAST of Csor.00g287360 vs. ExPASy TrEMBL
Match: A0A6J1I9E9 (uncharacterized protein LOC111470407 OS=Cucurbita maxima OX=3661 GN=LOC111470407 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.37e-20
Identity = 44/47 (93.62%), Postives = 44/47 (93.62%), Query Frame = 0

Query: 11 MGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTE 57
          MGRMDRKSSIE EPRTLKMNQIQFAR  ALYVMNTTSMEEAIKIFTE
Sbjct: 1  MGRMDRKSSIETEPRTLKMNQIQFARLTALYVMNTTSMEEAIKIFTE 47

BLAST of Csor.00g287360 vs. TAIR 10
Match: AT4G33467.2 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-10
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 0

Query: 11  MGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFT----EGLEAAE--- 70
           M  ++R+SSIE EP TL ++Q++ ARE ALYVM T +MEEA+ IFT    EGL A+E   
Sbjct: 7   MDMLERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKETHEGLRASEERG 66

Query: 71  --CKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF 102
             C  ++DE++   ++ + ++    + P     DI TAPF
Sbjct: 67  GRCINLKDEED---DDDYEDERMMFMSP--HAWDIHTAPF 101

BLAST of Csor.00g287360 vs. TAIR 10
Match: AT4G33467.1 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 5.4e-10
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 0

Query: 11  MGRMDRKSSIEREPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFT-----EGLEAAE-- 70
           M  ++R+SSIE EP TL ++Q++ ARE ALYVM T +MEEA+ IFT     EGL A+E  
Sbjct: 7   MDMLERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKQETHEGLRASEER 66

Query: 71  ---CKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF 102
              C  ++DE++   ++ + ++    + P     DI TAPF
Sbjct: 67  GGRCINLKDEED---DDDYEDERMMFMSP--HAWDIHTAPF 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6571348.12.57e-63100.00hypothetical protein SDJN03_30263, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023512402.14.64e-5597.80uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo] >KAG7011119.1 ... [more]
XP_008460897.12.97e-4076.09PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo][more]
XP_011649401.12.84e-3871.74uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical ... [more]
XP_038902606.13.12e-3773.63uncharacterized protein LOC120089256 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A1S3CDH21.44e-4076.09uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=... [more]
A0A0A0LQ891.38e-3871.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1[more]
A0A6J1G8877.18e-3672.53uncharacterized protein LOC111451648 OS=Cucurbita moschata OX=3662 GN=LOC1114516... [more]
A0A6J1DBC11.70e-3364.21uncharacterized protein LOC111018915 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1I9E99.37e-2093.62uncharacterized protein LOC111470407 OS=Cucurbita maxima OX=3661 GN=LOC111470407... [more]
Match NameE-valueIdentityDescription
AT4G33467.24.1e-1042.00unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact... [more]
AT4G33467.15.4e-1041.58unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34808:SF2EXPRESSED PROTEINcoord: 9..101
NoneNo IPR availablePANTHERPTHR34808EXPRESSED PROTEINcoord: 9..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g287360.m01Csor.00g287360.m01mRNA