Csor.00g287120 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g287120
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionRibosomal RNA processing protein 1 like protein A
LocationCsor_Chr14: 8008774 .. 8009106 (-)
RNA-Seq ExpressionCsor.00g287120
SyntenyCsor.00g287120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTGATTTCTGAGATGTCTGAGATGTCGGAGATGTCTCAGATATCTGAGATGTCCGAGATGTCTGAGATTTCCGAGATGTTCGAGATGTCCGAGATGTCCGAGATGTTCGAGATGTCTAAGATGTCTGAGATGTTTGAGATGTCTGAGATGTCTGGGAGGTCTGGGAGGTCTGAGATGTCTGAGATATCTGAGATGTTTGAGATGTTTGGGAGGTCTGAGATGTCTGAGCTGTCCAAGATATCTGAGATGTTAGAGATGTTAGAGATGTCTGAGATGTCTGAGATCTTCTATATGTCTAAGATATCTGAGATGTTCGAAATGTCTTAG

mRNA sequence

ATGTCGGTGATTTCTGAGATGTCTGAGATGTCGGAGATGTCTCAGATATCTGAGATGTCCGAGATGTCTGAGATTTCCGAGATGTTCGAGATGTCCGAGATGTCCGAGATGTTCGAGATGTCTAAGATGTCTGAGATGTTTGAGATGTCTGAGATGTCTGGGAGGTCTGGGAGGTCTGAGATGTCTGAGATATCTGAGATGTTTGAGATGTTTGGGAGGTCTGAGATGTCTGAGCTGTCCAAGATATCTGAGATGTTAGAGATGTTAGAGATGTCTGAGATGTCTGAGATCTTCTATATGTCTAAGATATCTGAGATGTTCGAAATGTCTTAG

Coding sequence (CDS)

ATGTCGGTGATTTCTGAGATGTCTGAGATGTCGGAGATGTCTCAGATATCTGAGATGTCCGAGATGTCTGAGATTTCCGAGATGTTCGAGATGTCCGAGATGTCCGAGATGTTCGAGATGTCTAAGATGTCTGAGATGTTTGAGATGTCTGAGATGTCTGGGAGGTCTGGGAGGTCTGAGATGTCTGAGATATCTGAGATGTTTGAGATGTTTGGGAGGTCTGAGATGTCTGAGCTGTCCAAGATATCTGAGATGTTAGAGATGTTAGAGATGTCTGAGATGTCTGAGATCTTCTATATGTCTAAGATATCTGAGATGTTCGAAATGTCTTAG

Protein sequence

MSVISEMSEMSEMSQISEMSEMSEISEMFEMSEMSEMFEMSKMSEMFEMSEMSGRSGRSEMSEISEMFEMFGRSEMSELSKISEMLEMLEMSEMSEIFYMSKISEMFEMS
Homology
BLAST of Csor.00g287120 vs. NCBI nr
Match: KAG6603397.1 (hypothetical protein SDJN03_04006, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116 bits (291), Expect = 6.96e-31
Identity = 81/110 (73.64%), Postives = 93/110 (84.55%), Query Frame = 0

Query: 1   MSVISEMSEMSEMSQISEMSEMSEISEMFEMSEMSEMFEMSKMSEMFEMSEMSGRSGRSE 60
           MS +SEMSEMSEMS++SEMSEMSE+SEM EMSEMSEM EMS+MSEM EMSEMS  S  SE
Sbjct: 1   MSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSE 60

Query: 61  MSEISEMFEMFGRSEMSELSKISEMLEMLEMSEMSEIFYMSKISEMFEMS 110
           MSE+SEM EM   SEMSE+S++SEM EM EMSEMSE+  MS++SEM EMS
Sbjct: 61  MSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMS 110

BLAST of Csor.00g287120 vs. NCBI nr
Match: KAG6603345.1 (hypothetical protein SDJN03_03954, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117 bits (293), Expect = 2.17e-30
Identity = 83/113 (73.45%), Postives = 95/113 (84.07%), Query Frame = 0

Query: 1   MSVISEMSEMSEMSQISEMSEMSEISEMFEMSEMSEMFEMSKMSEMFEMSEMSGRSGRSE 60
           MS +SEMSEMSEMS++SEMSEMSE+SEMFEMSEMSEM EMS+MSEM EMSEMS  S  SE
Sbjct: 64  MSEMSEMSEMSEMSEMSEMSEMSEMSEMFEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSE 123

Query: 61  MSEISEMFEM---FGRSEMSELSKISEMLEMLEMSEMSEIFYMSKISEMFEMS 110
           MSE+SEM EM   F  SEMSE+S++SEM EM EMSEMSE+  MS++SEM EMS
Sbjct: 124 MSEMSEMSEMSVMFEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMS 176

BLAST of Csor.00g287120 vs. NCBI nr
Match: KAG6603344.1 (hypothetical protein SDJN03_03953, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113 bits (283), Expect = 9.58e-30
Identity = 78/110 (70.91%), Postives = 93/110 (84.55%), Query Frame = 0

Query: 1   MSVISEMSEMSEMSQISEMSEMSEISEMFEMSEMSEMFEMSKMSEMFEMSEMSGRSGRSE 60
           MS +SEMSEMSEMS++SEMSEMSE+SEM EMSEMSEM E++ MSEM EMSEMS  S  SE
Sbjct: 1   MSKMSEMSEMSEMSEMSEMSEMSELSEMSEMSEMSEMSEITVMSEMSEMSEMSEMSEMSE 60

Query: 61  MSEISEMFEMFGRSEMSELSKISEMLEMLEMSEMSEIFYMSKISEMFEMS 110
           MSE+SEM EM   SEMSE+S++SEM EM EMSEMSE+  MS++SE++EMS
Sbjct: 61  MSEMSEMSEMSELSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSELYEMS 110

BLAST of Csor.00g287120 vs. NCBI nr
Match: KAG6592798.1 (hypothetical protein SDJN03_12274, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119 bits (298), Expect = 2.18e-29
Identity = 82/110 (74.55%), Postives = 94/110 (85.45%), Query Frame = 0

Query: 1   MSVISEMSEMSEMSQISEMSEMSEISEMFEMSEMSEMFEMSKMSEMFEMSEMSGRSGRSE 60
           MSV+SEMSEMSEMS++SEMSEMSE+SEM EMSEMSEM EMS+MSEM EMSEMS  S  SE
Sbjct: 118 MSVMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSE 177

Query: 61  MSEISEMFEMFGRSEMSELSKISEMLEMLEMSEMSEIFYMSKISEMFEMS 110
           MSE+SEM EM   SEMSE+S++SEM EM EMSEMSE+  MS++SEM EMS
Sbjct: 178 MSEMSEMSEMSEMSEMSEMSELSEMSEMSEMSEMSEMSEMSEMSEMSEMS 227

BLAST of Csor.00g287120 vs. NCBI nr
Match: KAG6603391.1 (putative protein L357, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116 bits (290), Expect = 8.88e-29
Identity = 78/110 (70.91%), Postives = 95/110 (86.36%), Query Frame = 0

Query: 1   MSVISEMSEMSEMSQISEMSEMSEISEMFEMSEMSEMFEMSKMSEMFEMSEMSGRSGRSE 60
           MS +SEMSEMSEMS++SE+SEMSE+SEM EMSEMSE  EMS+MSEM EMSEMS  SGRSE
Sbjct: 186 MSEMSEMSEMSEMSEMSELSEMSEMSEMSEMSEMSEKSEMSEMSEMPEMSEMSDMSGRSE 245

Query: 61  MSEISEMFEMFGRSEMSELSKISEMLEMLEMSEMSEIFYMSKISEMFEMS 110
           MSE+SEM EM   S+MSE+S++S+M E+ EMSEMSE+  MS++S+MFEMS
Sbjct: 246 MSEMSEMSEMSEMSDMSEMSEMSDMSELSEMSEMSEMPQMSEMSDMFEMS 295

BLAST of Csor.00g287120 vs. ExPASy TrEMBL
Match: A0A6P0RAG7 (Uncharacterized protein OS=Okeania sp. SIO3I5 OX=2607805 GN=F6K40_14380 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.89e-13
Identity = 49/92 (53.26%), Postives = 76/92 (82.61%), Query Frame = 0

Query: 4   ISEMSEMSEMSQISEMSEMSEISEMFEMSEMSEMFEMSKMSEMFEMSEMSGRSGRSEMSE 63
           +SE SE+SE+S++SE+SE+SE+SE+ E+SE+SE  E+S+ SE+ E+SE+S  SG SE+SE
Sbjct: 121 VSEFSELSEVSELSEVSELSEVSELSELSEVSEPSEVSEPSEVSELSEVSEPSGVSELSE 180

Query: 64  ISEMFEMFGRSEMSELSKISEMLEMLEMSEMS 95
           +SE+ E  G S +SELS++S++ E+ E+SE+S
Sbjct: 181 VSELSEPSGVSGVSELSELSQVSELSEVSELS 212

BLAST of Csor.00g287120 vs. ExPASy TrEMBL
Match: A0A0L0DKA1 (Zinc finger protein OS=Thecamonas trahens ATCC 50062 OX=461836 GN=AMSG_08485 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.60e-11
Identity = 50/103 (48.54%), Postives = 64/103 (62.14%), Query Frame = 0

Query: 7   MSEMSEMSQISEMSEMSEISEMFEMSEMSEMFEMSKMSEMFEMSEMSGRSGRSEMSEISE 66
           M EM EM ++ EM EM E+ EM EM EM EM E+ +M EM EM EM       EM E+ E
Sbjct: 43  MMEMMEMMEMMEMMEMMEMMEMMEMMEMMEMMELMEMMEMMEMMEMMEMMEMMEMMEMME 102

Query: 67  MFEMFGRSEMSELSKISEMLEMLEMSEMSEIFYMSKISEMFEM 109
           M EM    EM E+ ++ EM+EM+EM EM E+  M ++ EM EM
Sbjct: 103 MMEMMEMMEMMEMMEMMEMMEMMEMMEMMEMMEMMEMMEMMEM 145

BLAST of Csor.00g287120 vs. ExPASy TrEMBL
Match: A0A0L0DMA6 (Uncharacterized protein OS=Thecamonas trahens ATCC 50062 OX=461836 GN=AMSG_08093 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.18e-10
Identity = 52/104 (50.00%), Postives = 64/104 (61.54%), Query Frame = 0

Query: 6   EMSEMSEMSQISEMSEMSEISEMFEMSEMSEMFEMSKMSEMFEMSEMSGRSGRSEMSEIS 65
           EM EM EM ++ EM EM E+ EM EM EM EM EM  M EM EM EM       EM E+ 
Sbjct: 46  EMMEMMEMMEMMEMMEMMEMMEMMEMMEMMEMMEM--MMEMMEMMEMMEMMEMMEMMEMM 105

Query: 66  EMFEMFGRSEMSELSKISEMLEMLEMSEMSEIFYMSKISEMFEM 109
           EM EM    EM E+ ++ EM+EM+EM EM E+  M ++ EM EM
Sbjct: 106 EMMEMMEMMEMMEMMEMMEMMEMMEMMEMMEMMEMMEMMEMMEM 147

BLAST of Csor.00g287120 vs. ExPASy TrEMBL
Match: A0A6J1EW04 (uncharacterized protein LOC111438534 OS=Cucurbita moschata OX=3662 GN=LOC111438534 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.72e-10
Identity = 65/126 (51.59%), Postives = 81/126 (64.29%), Query Frame = 0

Query: 1   MSVISE---MSEMSEM------SQISEMSEMSEISEMFEMSE--------MSEMFEMSKM 60
           +SVISE   MSEMSEM      S++SE+S M EI EM EMSE        MSE+F MS+M
Sbjct: 10  LSVISELLLMSEMSEMPLMFGRSKMSELSTMFEIYEMTEMSEKPLMSMPLMSELFLMSEM 69

Query: 61  SEMFEMSEMSGRSGRSEMSEISEMFEMFGRSEMSELSKISEMLEMLEMSEMSEIFYMSKI 109
            EM E+SEM+     S MS +S M +M G SEMS +S++S M  M +MSEMS +  MS +
Sbjct: 70  PEMHEISEMTLMCMMSVMSAVSAMPKMSGMSEMSLMSEMSVMSLMFKMSEMSAMSKMSLM 129

BLAST of Csor.00g287120 vs. ExPASy TrEMBL
Match: A0A6P0R982 (Uncharacterized protein OS=Okeania sp. SIO3I5 OX=2607805 GN=F6K40_14360 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.73e-10
Identity = 49/104 (47.12%), Postives = 80/104 (76.92%), Query Frame = 0

Query: 2   SVISEMSEMSEMSQISEMSEMSEISEMFEMSEMSEMFEMSKMSEMFEMSEMSGRSGRSEM 61
           S +SE+SE+S +S +SE+SE+S +S + E+S +S + E+S++SE+ E+S +S  SG SE+
Sbjct: 11  SEVSEVSEVSGVSGVSEVSELSGVSGVSEVSGVSGVLEVSELSEVLEVSGVSEVSGVSEV 70

Query: 62  SEISEMFEMFGRSEMSELSKISEMLEMLEMSEMSEIFYMSKISE 105
           SE+SE  E+ G S +SELS++SE+ E+ E+SE+SE+  +S +SE
Sbjct: 71  SEVSEPLEVSGVSGVSELSEVSEVSELSEVSEVSELSELSGVSE 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6603397.16.96e-3173.64hypothetical protein SDJN03_04006, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603345.12.17e-3073.45hypothetical protein SDJN03_03954, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603344.19.58e-3070.91hypothetical protein SDJN03_03953, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6592798.12.18e-2974.55hypothetical protein SDJN03_12274, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603391.18.88e-2970.91putative protein L357, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
A0A6P0RAG79.89e-1353.26Uncharacterized protein OS=Okeania sp. SIO3I5 OX=2607805 GN=F6K40_14380 PE=4 SV=... [more]
A0A0L0DKA12.60e-1148.54Zinc finger protein OS=Thecamonas trahens ATCC 50062 OX=461836 GN=AMSG_08485 PE=... [more]
A0A0L0DMA61.18e-1050.00Uncharacterized protein OS=Thecamonas trahens ATCC 50062 OX=461836 GN=AMSG_08093... [more]
A0A6J1EW041.72e-1051.59uncharacterized protein LOC111438534 OS=Cucurbita moschata OX=3662 GN=LOC1114385... [more]
A0A6P0R9823.73e-1047.12Uncharacterized protein OS=Okeania sp. SIO3I5 OX=2607805 GN=F6K40_14360 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g287120.m01Csor.00g287120.m01mRNA