Csor.00g286890 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g286890
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr05: 6117003 .. 6120387 (+)
RNA-Seq ExpressionCsor.00g286890
SyntenyCsor.00g286890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTACAAAAAAAAGCCTAAACCCTACAATCCTTCCTCTTTCCCCCACCCCACTTCTGGTCTTCAGTTTTGTTATATTGTTACCGCAGTCGAACGCCGGCACCCCTCACTGTACCATTCAGTTTCTTTCTTCACTCCCTCTCTGCTGCAGCCGTAAGCTGCTGGCTGTCCAGCATCCCTCCACTGCCCCCACCGGGTTCTTTTCCTTCTTCTCTCCCTATCTCTTTCTGCCGCAGCCGCACGCCGGCGAGTCACCCTCGTGTTCTGCCGCAGCCGCACCAGTGTCGACTACCTTCTTTTGCAGCTGTCCGTCGCCGTGGTCCACTCCACTCTTCCCCCACACTTTCCATCTTCTTCCAGTCGCTCGCCGTCGAGGTCTTTTGGGTTGGACCCACTCCGGGTAAAATTCGAATTAGGTCATTTTTAACATAAAATCCTTCCATTGAAAGCCAATCATATTTATGAAGTATCTTGATGACTCTAGGGACCTTAAAAGTTATTTTTATGGATTCCAAGAGTGCTGTTGTATCTTTTTGAATTCTTTACTGGGAGACTGGGTCGGGTTATTGCCTGAGACGGTTTCCGTAGAAGCATATACTCGTTGTTTTATAGTTCCCTCTTGTAATTTTTTTTTTTTTTTGTAGTGGGAGACACAAGAATGTAAAATTCAAATATGTATTCAAAACTACATAAAAATGGTTTACTAATCAAGGGGTAGCGTTTAAAATAATAATAAAAGGACAAGAAAGAAGACTACTCGTCCGCCATTAACAAGTCTACACTCTTATCGGACAAAAATAAAATAAAATAACATGAGATGAGTATAAAATACTCGGTAAGTAATCTACTTGTAGTCTTTTAGAAAACTTAGGCTATGTGCTCGTAACTATGATAGAGGTCACCAAATCTATCACAAAATAAAGTTTGTACTAACCTTTGCAGGTCACTATGTAACTAAACCCTCATTATACCTCATTAAGGAGTATTCTAACCCTCTTAAGTTCATAAATTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTCTAGGTTTCACGTATGTCTAGGTTCTTGCGAAGTGCGCCTCGAGTCGCTGTGGCCCATGGAAAGGCCCTAGGGTAATACTCATAGTACTTGAGGAGCCCTTTTTGTTCTAACATGGTAACCGTACTCTATACAACCTACTGAGCACTAAGCGAAGGGTTCTCCCTAGTGGTGTTGGACAACATCTTCCTGTCTCTAAGATCAGTAAACTACCTGTACTCTACCTTTCCAGGCTGGAACAGTAACTACCTGCTCATGTACCCTTCTTGGGTTAGAACAATAAAACTACATGTCTTAGGAACAATAGCTATTTGTTACTTTGCCTTTTCAGGCTAGAATAGTAAACTACCTGTCACTACGCCATTTAGGTTGGGATAGTAAAAATGCCATGGCTCCCCACTAGGCACTGCCGATAGTACTTCAGTAGTATACCTTATGTGACCCCTGGAATCCACCATAGGTGACAATTAAGCCATGTGTAACAAGTAGACCCTAACCCCTGTTTGGTTTACGAATAGGGGTTGCACCCTATTCGTTCCTATAAGGAACCCGGTCAACCCAAGGGGGCTATGGAACTCATGACTAGGTGCTAGGACCAAAATACGTGAAACATTAACTTGTAGCCCATGGAGACCAAGACTAACACTCTATGGCGCATAGCGATAGTCTAACTCACAAGTGTTACCGGCTATCCAAACCCTAAATCATGCATAATGAACGTATAAAGGCATACAACATGCTCATTATGCCCATTCAGTGATGATAAACCAACCTCAACATACTGGAAAGCATAAAAGTCTAATAAACTATCAGAGTTCACAAATCATGCGTGTGGATAGTTAGAATTGAATTATAAACTATTCACATTATCTAAACTTAATTATCACGATGCTAGATCAATTAGGCTTCTAATTATGATACTCAGGCATTTTTCCTCGATCCTAATCGACTCCTACAACTATTTCTTAGAACTTGCTTCATGTGGTTACTTGTTTGTCCACTTCCCGAGCTTGGTTCGGGTCTTTAAGTTCTCTAGAATTTCTCAATATGCCCTAAATTAAGTCAAAAGAATATAACTGGTAAAAATGGCTTGAAGAACGAATTCCAAGAAGCTTCAAATTCCTTAAAAAAGGGATGTAGGCTGAGAAACTAACGGTTGACTATATGGTTATCTTTTCCAACTTGTGTGCGTGCCATTTTGTTTTTCTTTCTACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAAAAAATTCTTTTATTTATTTTCTTAAAACTCTAGATGTTACACCTTTTTTATTTCCTCGAGTCAGTGACCATGTTACGACAGCTAAGTTTCTAATGGAATTTGAGCATGGAAAGGACCCTCTAATTGATTTGTTGTTTAGTCTGCTAAAAAACATTTTCTAGGAAAGAGGTGAAGAGTGGATAGAGTGAATATATAGGGATTAGGGACTTACTAGAGAAGGATCTCATCTAGATGACAGAAGGATTTTTATTTATTTGTTTATTCTCTAGATTCCAATGATTCAGTTGTATCTTTTTTAATTCCTCATTGGTAGAGAGGCTGAGTCGCATTATTTTCCTTGGACGGTTTCAATAGTAGCATCTACACGTGTATCAGTTCCCCTATGTTTCCCCTTTGTTGTCAGTCGCCAATGCAAACTCATTCATATTATGAAGAAATCAAAATGATGTATATCGAGTTCTTGTGAATATAGAGATGAGTGAAGAAAGGAATTAGCACGTATTGAAATTGAAGAAAAATTAATGGAAAAAATGGTGTTTCAATTGTGTTGTATGCACATTATTTCTTTTCGAAGGATGCTGTTTTAGCACATTGTTACGGCCTATTATCGTATGTTTGGCTATTGTTTTTTCTTTTCTCCCTTTGAGAGGTTTTCCTTGAACTTTTTGTGTTGTATGCACATGAATGTGTATGTACTTTAGTGCATTGTTCTATTTGGTTGTATGTAGTGCATTTTTTTTGTGGTGAACCTTGAAAGGAATCAGTAGTACTAACTTATATGTAAATAGTGTTTAAGTTTCTAGCATTGATAGTTGATGGAAATTATGTTTTTTTTTTCAATCTTAATTTTAGTGTTAGGAAATGTCAGATGAGTACTTGAACCACTATGAAAAATAAAAGAGCACCGTCAATGGCATGTTGACACATTATTTTCTATGAATCAATGTGATAATTTTTCTGAAGAATATATTACGTGTTCATATATATATATATATATATATATTTCTTGAATGAGAGGTGGATTCTTTTGATAGACCCCTTTTCTTTTTATGTTTTGTAGTTCTTGCTAGCAATTTTTGGGTTTTGTAA

mRNA sequence

ATGTGTTACAAAAAAAAGCCTAAACCCTACAATCCTTCCTCTTTCCCCCACCCCACTTCTGGTCTTCAGTTTTGTTATATTGTTACCGCAGTCGAACGCCGGCACCCCTCACTGTACCATTCAGTTTCTTTCTTCACTCCCTCTCTGCTGCAGCCCCGCACGCCGGCGAGTCACCCTCGTGTTCTGCCGCAGCCGCACCAGTGTCGACTACCTTCTTTTGCAGCTGTCCGTCGCCGTGGTCCACTCCACTCTTCCCCCACACTTTCCATCTTCTTCCAGTCGCTCGCCGTCGAGGTCTTTTGGGTTGGACCCACTCCGGTTCTTGCTAGCAATTTTTGGGTTTTGTAA

Coding sequence (CDS)

ATGTGTTACAAAAAAAAGCCTAAACCCTACAATCCTTCCTCTTTCCCCCACCCCACTTCTGGTCTTCAGTTTTGTTATATTGTTACCGCAGTCGAACGCCGGCACCCCTCACTGTACCATTCAGTTTCTTTCTTCACTCCCTCTCTGCTGCAGCCCCGCACGCCGGCGAGTCACCCTCGTGTTCTGCCGCAGCCGCACCAGTGTCGACTACCTTCTTTTGCAGCTGTCCGTCGCCGTGGTCCACTCCACTCTTCCCCCACACTTTCCATCTTCTTCCAGTCGCTCGCCGTCGAGGTCTTTTGGGTTGGACCCACTCCGGTTCTTGCTAGCAATTTTTGGGTTTTGTAA

Protein sequence

MCYKKKPKPYNPSSFPHPTSGLQFCYIVTAVERRHPSLYHSVSFFTPSLLQPRTPASHPRVLPQPHQCRLPSFAAVRRRGPLHSSPTLSIFFQSLAVEVFWVGPTPVLASNFWVL
Homology
[Close]
BLAST of Csor.00g286890 vs. NCBI nr
Match: KAG6599005.1 (hypothetical protein SDJN03_08783, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243 bits (621), Expect = 2.49e-81
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MCYKKKPKPYNPSSFPHPTSGLQFCYIVTAVERRHPSLYHSVSFFTPSLLQPRTPASHPR 60
           MCYKKKPKPYNPSSFPHPTSGLQFCYIVTAVERRHPSLYHSVSFFTPSLLQPRTPASHPR
Sbjct: 1   MCYKKKPKPYNPSSFPHPTSGLQFCYIVTAVERRHPSLYHSVSFFTPSLLQPRTPASHPR 60

Query: 61  VLPQPHQCRLPSFAAVRRRGPLHSSPTLSIFFQSLAVEVFWVGPTPVLASNFWVL 115
           VLPQPHQCRLPSFAAVRRRGPLHSSPTLSIFFQSLAVEVFWVGPTPVLASNFWVL
Sbjct: 61  VLPQPHQCRLPSFAAVRRRGPLHSSPTLSIFFQSLAVEVFWVGPTPVLASNFWVL 115

[Close]
BLAST of Csor.00g286890 vs. NCBI nr
Match: KAG7029972.1 (hypothetical protein SDJN02_08316, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113 bits (283), Expect = 7.28e-30
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0 

Query: 48  SLLQPRTPASHPRVLPQPHQCRLPSFAAVRRRGPLHSSPTLSIFFQSLAVEVFWVGPTP 106
           S  + RTPASHPRVLPQPHQCRLPSFAAVRRRGPL SSPTLSIFFQSLAVEVFWVGPTP
Sbjct: 45  SFCRNRTPASHPRVLPQPHQCRLPSFAAVRRRGPLQSSPTLSIFFQSLAVEVFWVGPTP 103

The following BLAST results are available for this feature:
BLAST of Csor.00g286890 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g286890 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6599005.12.49e-81100.00hypothetical protein SDJN03_08783, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7029972.17.28e-3091.53hypothetical protein SDJN02_08316, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g286890 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g286890 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g286890.m01Csor.00g286890.m01mRNA