Csor.00g286360 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g286360
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr10: 244484 .. 247127 (+)
RNA-Seq ExpressionCsor.00g286360
SyntenyCsor.00g286360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCGTATCTCGGATCTCATACTTTTGCTTCAAATCGTACTGCGGTTGGCATTAGAATCGAATCGGGATCTTTTTCACCTTCTTCCCCACCCCCCGAATCAAATATCCAACAGCTAACCAGTGAATTTAAGGATCGCGTTTCGAAAGCAAACCAAATTTACAGACTCTTTACCGTAATCGCTGAAACTCCAATGATACAGTAATAGCACAAGTCTCACAACAATAATCCGTAAAATGGAGAAGTTAAGAAAGAAACACAGTAATAGCGACATAAATTTAAGCGGAGAGATGAAATGGAAAACAGAGATTTAGCCAGTGTAGATGTGGACGCCGATGGCGACGAGGAAGATGGTGATGAGGCCGAAGTAGATGATGGCGTGGACTAAAATGGAAGCCCCGCTTGTCTGCATGTTCCCAAACTCAACCACCCTTCCTCTGGCTGGGATCTGAAACAGCAGCCCCGGACTGAGGAGCACGAACAGCACCACCGCTATAATGACCGGCCCCCAATCTGCCATTGGATGGATGTGTGTTCAACTTTACGCCTGCAGAACCACAGAAAAAGGAGTTGTGAGTTTTGGCGATGGGGATGGGGATGGGGCTGGGAGGATGGAAGATATGAGAAGGCGAAGCAATGGCGTGGGGGTTTTCAAACTTGGAAGCGGTACAGTGATTCGGCGACTGCATCGATCTTGATGCTTCACGTGGACGGATGAGGCGGTGCCATTTTTGGGTTTTCCTTAATTTAATTTTTCAGGCATCGTCAGATGAAAACTTTATTGAACTAACGCTGCTTACAGTTACATTCAACTTTCCAGCACAGACACCTTTTGATGCTTCGTACATCTTATTAAAACGTTCTTTTCAATGTCAAATGCTGTGTTGGGGATGCATTGCTCTCCCGGTTCCCACTAAATTTATCTATTTTTCATTCTTAACCTAACTCAATTCATAAAAATCCACCTAAAATACATAATGTATTTGTTCACTCTAGTGGTCCCTTGTTAGGATCTTATAATATGAAGATTATTAAGAGAGTGCCAACTTCGGTATTAAATTTGTCTCCATCCAAATAAGTATATCATCAAACTAATATGATTAAAAAAAATAAAAAAAAAAACAGTAAATCATCAAGATAGTAATCAAAAGTTGCTTTACTCATCTACTGTGGTTAAGATGTTCATTTTATTTGCGTGGTTGGAGCTTCGGGGGACACGCCCTAAGGCTCGAATGGGGAGCGGATTCCTCTAAAGTTTAGACGGGAATGTGGGAGCGAGTGAGGAACATTTTTTTTTCCGTTAGATAAATGAGGTTGTAGATGGTATTATATTTCCCGTTCTCAACCCAATTTTGAGTCCTGTTTTATATAAATATATTTTCACACACATATTCAAAATATTTATATGAATAAATAAATTAGTTAATTTCGGAATTTAATGTTGTATACTTTAAAAAAAAATTATTAAATACTATATTATAATATTAAATTTTATTATGATTTTTTTAATAAAAAATAAGTTGAAATTTGAAAATTTCAAAATAAATATGGAATTTTGCTTAAATTAGAAATGAAATAGATGATGGGTAGAGTGGAGGACTGAATTCCACGGGCTAGAAGTGGAGGACCAATTTTTAAAAGAATCATTATTAAATAAAGCCCGAAAATAAATTTGAAAAAGTAAATGGAAACTGGAGAAAATAATTATAAAATTGAGGTTGGATTTAAAAGTTTATGATGTTAAGTATAAATGCAATTAAACTAATTTATTCTACACAAATTAATTTCTGAATTTTATAAATGGATAAATTAATTAAATAAATCACTAAAATAAACTTAATTTAACTATAATTATCATATACTATATTATATCTTTTAAAGTTAAAATTTATAAGTTAATTCTCTTTGTACGTGCACTAAAAAATGATTAAATAAATTGGGAAAATAGTAACTTGAAAATGAATTTCTTTATTTAGCGCCAAACGGAAGCATTCCTCGGAAATATTACCGAGTTGTTGCGGTTAGTTTCGCTTACGTGTACGATTCCAATTGGTCCACTCTCCCCATCCTCTTACAAAAATTCGATTCCTCCCATTTATTATGGTCTCTCCTCTTCCTTCCCTCTCTCTTTTCGCTCTCTCTCGCTCTCTTTCTTCGTTCGACGGTCGGTAGTTTCTCCCGGATAATCTTTTAACTTTCCGATTAGATTACCGACCGTTAGTCCTCTATTTTTCTTTGAATCTTCGAAGTTTTTCGATTGATTTTCGCTATTAACCCCATTTCTCCATTCCGTTTTGGCGCTTCAGCTCCCGATTTAGTTGCTGGCGCGATTGGGTATAACTCTTAATTTTTTGAACAATCACTTTCTGAGGCCGGAAAATTTCTGTTCACGATTTTCTAGGGAGAAAAAGGGACGATTCGACGTTGAAGAAGAAGCGACATATTTCAGGTTTCTGGATTTTCTTTTTGTTTCGTTATTTCGGTTCTATGCTTCAAAAACTGGGAGTTGTTCATTAGAATTGAATCTTAATTGCTCACTGTTCTTTAGCGTCTAAATTGGATCATGTTTCGTTTCTCATATTCATTTTTTTTAATTGACGTTGAACGAGTTTCTGTTGCAACGTTTTCAAGGTCTTATCTGA

mRNA sequence

ATGGGATCGTATCTCGGATCTCATACTTTTGCTTCAAATCGTACTGCGGTTGGCATTAGAATCGAATCGGGATCTTTTTCACCTTCTTCCCCACCCCCCGAATCAAATATCCAACAGCTAACCAGTGAATTTAAGGATCGCGTTTCGAAAGCAAACCAAATTTACAGACTCTTTACCGTAATCGCTGAAACTCCAATGATACACAGCCCCGGACTGAGGAGCACGAACAGCACCACCGCTATAATGACCGGCCCCCAATCTGCCATTGGATGGATGTGTGTTCAACTTTACGCCTGCAGAACCACAGAAAAAGGAGTTGTGAGTTTTGGCGATGGGGATGGGGATGGGGCTGGGAGGATGGAAGATATGAGAAGGCGAAGCAATGGCGTGGGGGTTTTCAAACTTGGAAGCGGGAGAAAAAGGGACGATTCGACGTTGAAGAAGAAGCGACATATTTCAGGTCTTATCTGA

Coding sequence (CDS)

ATGGGATCGTATCTCGGATCTCATACTTTTGCTTCAAATCGTACTGCGGTTGGCATTAGAATCGAATCGGGATCTTTTTCACCTTCTTCCCCACCCCCCGAATCAAATATCCAACAGCTAACCAGTGAATTTAAGGATCGCGTTTCGAAAGCAAACCAAATTTACAGACTCTTTACCGTAATCGCTGAAACTCCAATGATACACAGCCCCGGACTGAGGAGCACGAACAGCACCACCGCTATAATGACCGGCCCCCAATCTGCCATTGGATGGATGTGTGTTCAACTTTACGCCTGCAGAACCACAGAAAAAGGAGTTGTGAGTTTTGGCGATGGGGATGGGGATGGGGCTGGGAGGATGGAAGATATGAGAAGGCGAAGCAATGGCGTGGGGGTTTTCAAACTTGGAAGCGGGAGAAAAAGGGACGATTCGACGTTGAAGAAGAAGCGACATATTTCAGGTCTTATCTGA

Protein sequence

MGSYLGSHTFASNRTAVGIRIESGSFSPSSPPPESNIQQLTSEFKDRVSKANQIYRLFTVIAETPMIHSPGLRSTNSTTAIMTGPQSAIGWMCVQLYACRTTEKGVVSFGDGDGDGAGRMEDMRRRSNGVGVFKLGSGRKRDDSTLKKKRHISGLI
Homology
[Close]
BLAST of Csor.00g286360 vs. NCBI nr
Match: KAG6589376.1 (hypothetical protein SDJN03_14799, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 309 bits (792), Expect = 4.44e-106
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MGSYLGSHTFASNRTAVGIRIESGSFSPSSPPPESNIQQLTSEFKDRVSKANQIYRLFTV 60
           MGSYLGSHTFASNRTAVGIRIESGSFSPSSPPPESNIQQLTSEFKDRVSKANQIYRLFTV
Sbjct: 1   MGSYLGSHTFASNRTAVGIRIESGSFSPSSPPPESNIQQLTSEFKDRVSKANQIYRLFTV 60

Query: 61  IAETPMIHSPGLRSTNSTTAIMTGPQSAIGWMCVQLYACRTTEKGVVSFGDGDGDGAGRM 120
           IAETPMIHSPGLRSTNSTTAIMTGPQSAIGWMCVQLYACRTTEKGVVSFGDGDGDGAGRM
Sbjct: 61  IAETPMIHSPGLRSTNSTTAIMTGPQSAIGWMCVQLYACRTTEKGVVSFGDGDGDGAGRM 120

Query: 121 EDMRRRSNGVGVFKLGSGRKRDDSTLKKKRHISGLI 156
           EDMRRRSNGVGVFKLGSGRKRDDSTLKKKRHISGLI
Sbjct: 121 EDMRRRSNGVGVFKLGSGRKRDDSTLKKKRHISGLI 156

The following BLAST results are available for this feature:
BLAST of Csor.00g286360 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g286360 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589376.14.44e-106100.00hypothetical protein SDJN03_14799, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g286360 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g286360 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g286360.m01Csor.00g286360.m01mRNA