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Csor.00g285490 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTTTGACTCGAGTGATTGGGAGAAGATTTCTGGCTGCTGCTAGATCAGAAACTTCCTCTGCCACAGCTGCTGCTTCTACAACTACGATGGGCTACAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAAATGACGACAAACCTGTTGTATATGGTATATTCATATATCGCCTTCAAACTTTGGTCTTCTTTATCAATCTATAAATTTGTAGTTTGGTTCCTTCATTTTGAAGAATTTGTCTCAAAATACTGTTCCTTTGGTGGGTATCTGGTTTGATATCGTGAAATACTGAAATTTGAACTTGAAGTCATGGATAGTCTACTTACTCATGGGAATGAATACAAATTGATCAGATTCAGCCACTGCACTAAAAGAAAATACCCTCCTTGTTGTGTATGGATTTGAAATGCATCTTGATTCATACCGGTTACAGGTTACTTGGTCCAGTTCAAATAATTGGTTACAGGCGGGGACTGTGGATTCTGCTTCATTGATAAAACATCACAAATGTTATATGTTTTATGTTACTGGATTTTACATGATATAATAGATGAAAATGAGTAATTACAAATAACTATGCTGGACAGAGACCTACAGATTTCTCAACACCTGAGAGACACCAAAGTGCTCCAAAAAAAAAAAAAAAAAAAAAAAAATTAGTTTCATCATAATTTCAATAGTATATGTTCTTCTTTGTTTTCTTTGATTACAGGTTTTATTTTAGTACAATTACCTGATTGGTTGCATAGTGAAAATAGGAGCAAGGACTTTAAATAGGTGCAGGCGGCATGATTATGTCTGATCTATCTGCATAGCTTCTATACCTGTCAGTGCTTTCTTATTTCTGAATCTGTGTTATGTGTGCCATGTGATCAGCCCTTGAAAGTTTTATGTGTGTTTTCAGAATTTTTATAAATTGTTTTGTGATGGTTGCTCGTATGATATGATTGTTACGTTAATGTTTTATCATGTTGTCTACTCGTGTGGTTACTCACTTTGAATAAATTTGTGGTACTGGAAAATGCTTGCTCTTTGTCAAAGGCTATTTTGTTTTAGGATACACATTTTTCTCATGTCAATACAGATTTGATCTTTTGCCAAAGTTGTCATATATATATATATATATATACATGCATGTATGTATATGCCCTACTTCTTAGGAATAAAGGTCTCTTAAAAGTTCAAACAACCAAAAACGAAGTATGATGTAATAGATAATTTATGAGATTTAGAAGGTCGTCCCTCTTGGTCACCGCCTGTACTATATAGGAATGAAATATTCCTAAAGTTGTTCGACCCTAATGTTGTAAGCTTAGATACTTGTGCGAGATCCAAATGCCCGTGGATAACCAAAGAACCTCATAGTTTGCAATTAGTTTGTGACGATTGCAGTTTATAGTATAATTAAACAACCGCGGGCTGAAGTACAAAACTCACATGTCTTGCAAAATGTAAGGGATAAAAATCCCATTCATTAGAAGTTAGAAAAAGCTCTGATTCTTATGGCTGAAAGTTTGTGCCTTCTTGAAAAGACATTATTGAGATTCTAATTGCAATTCCTATGCTGTTAGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGATGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTAACGTTGGCAGAGATTTTGTATTATATTTAAATTGTAAATACAAGTTCATTTTGCTTTCTCGCTGTATTTGTTTCTTTCTCCTGCTTCAGTTGTGTGATCTCAGGGCTTGTGATGGTTCTCCTTTCACTACTTTTCTATTATAATGTCGATGGTGGTTGTTGGTGCTCGTAATTTAGGTGCGGAAGTCAATGTGCCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGGTAAACGCTCTGTGATTAGCGAATTCAGCACTTGTATGCAGTGGAGCTTATCATCAAGGTGACAAAAGGAGGAAGTGTTAGCATGATAACGCACGTCCGATACAACGTCTTATCATTCTGTAATCGAGGAGATATCATTAGAAGAAGCCTCGAAAATTGTTCGATGATTTCTAATAATGTTTTATCAACACTAATCAAAGTTTTGAAGATGTTTTAAATTGTGGCAAAGATTAAACAAGGGCCAAGTTTATTATTCTAGAATGTGTGTGTGTACTGATGCATTGGCTTTGATGAGATTCTGTGCAGCGCCTGTCTTGCTTGCTTATTCCAATTCTATTCCCTACAAGAGGGGGCAGAGCCACATGATTGGATTAGACATGCCGCTGCTTTTTTGATTAGCTTCTTGATCAAGACTGTTTATTCATGAGGGTGAACATAGACAGGGGACCCCCAACATCCTTTCTTTCTTTCTTATTGCTCGAGTTAAAACGATGCTGCCATGTGGCACGATCTTGTTGGAAGGAAAAAATTGATTAATGCTGTGTCACCCATTAAAATAGTAATGTGTTGGAACAGCTCTAGACAACCTTAACTTAATCTCCTCCCCTTCCCATAGGAGATATTACGTTGATGGAGTTAGGTGACAGGCGGGGGTGGCGGGGGGGGGGGGGGGCAAAGCTTCACCGGCTGGGTAACCCAATCATCCCCGGAGGAGAAAATTCCCGAAACGGAAAGTGGGAAGTGGGGCCCAGAGATGACGAAAACGGGGCCGCGAAGGGCATTGGATTGAATGTCAGAGCCCCCAAAAACGCAGTTGTGTAATTAAAATGAAAAGTCAAAATTGAAAATAAAAAAATAAAAAGAAAGAGAAAAGAAGAAGAAACATTTTGGGGCACGTTCTACAAAATCACTTGGGGGCGTTGCATCACCGCCATGTTTATTTATCATTAACTCAGCCCGAACTGCCCAATCTACCCCGAACTGCCCGGTCTCGGTTCTCTACCAAGTTACCAAGTACACATTTCCTTTCTGCCGTCTGGCTCTTTCTTTCTCTTCTCCTACAACCCCCCCCCCCCCCTCCCCTCTGTGCGTGCTTTCGATTTTCTCACTCTAGATTCTCGCACTCTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTTCTAGGTTGAAAGGCGGCTCGAAATCATTAATCATCTCTTTGCGTGTGGTTGGATCTGGACTTCAATTCGATCACTCTCTGTTAAATAAGGTAAACCCTAGAATTCGTACTCAATTGGTTCGCCGGTGGGATTTTCGGAAAATCCCTCTTGTCTTTATAGGGACATGATGCCCTGGCAGCGTTATGTATTGATCTAGGGTTTCTCGGTAAGCGGATAGCTTTGAATTGGCTTTCCTCTGTCGAATTAGGGTTAG ATGTTTTTGACTCGAGTGATTGGGAGAAGATTTCTGGCTGCTGCTAGATCAGAAACTTCCTCTGCCACAGCTGCTGCTTCTACAACTACGATGGGCTACAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAAATGACGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGATGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGCGGAAGTCAATGTGCCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGGTGACAGGCGGGGGTGGCGGGGGGGGGGGGGGGCAAAGCTTCACCGGCTGGGTAACCCAATCATCCCCGGAGGAGAAAATTCCCGAAACGGAAACCCGAACTGCCCAATCTACCCCGAACTGCCCGGTCTCGGTTCTCTACCAAGTTACCAAGTTGAAAGGCGGCTCGAAATCATTAATCATCTCTTTGCGTGTGGTTGGATCTGGACTTCAATTCGATCACTCTCTGTTAAATAAGGGTTAG ATGTTTTTGACTCGAGTGATTGGGAGAAGATTTCTGGCTGCTGCTAGATCAGAAACTTCCTCTGCCACAGCTGCTGCTTCTACAACTACGATGGGCTACAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAAATGACGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGATGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGCGGAAGTCAATGTGCCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGGTGACAGGCGGGGGTGGCGGGGGGGGGGGGGGGCAAAGCTTCACCGGCTGGGTAACCCAATCATCCCCGGAGGAGAAAATTCCCGAAACGGAAACCCGAACTGCCCAATCTACCCCGAACTGCCCGGTCTCGGTTCTCTACCAAGTTACCAAGTTGAAAGGCGGCTCGAAATCATTAATCATCTCTTTGCGTGTGGTTGGATCTGGACTTCAATTCGATCACTCTCTGTTAAATAAGGGTTAG MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIDEPDPRRSAEMKRMVTGGGGGGGGGQSFTGWVTQSSPEEKIPETETRTAQSTPNCPVSVLYQVTKLKGGSKSLIISLRVVGSGLQFDHSLLNKG Homology
BLAST of Csor.00g285490 vs. ExPASy Swiss-Prot
Match: Q8K2Y7 (39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1 SV=2) HSP 1 Score: 82.0 bits (201), Expect = 9.0e-15 Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 0
BLAST of Csor.00g285490 vs. ExPASy Swiss-Prot
Match: Q08DT6 (39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.5e-14 Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 0
BLAST of Csor.00g285490 vs. ExPASy Swiss-Prot
Match: Q9HD33 (39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 SV=2) HSP 1 Score: 79.3 bits (194), Expect = 5.8e-14 Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 0
BLAST of Csor.00g285490 vs. ExPASy Swiss-Prot
Match: P87232 (54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl4 PE=3 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 2.3e-10 Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 0
BLAST of Csor.00g285490 vs. ExPASy Swiss-Prot
Match: Q2H080 (54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MRPL4 PE=3 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.9e-09 Identity = 53/146 (36.30%), Postives = 70/146 (47.95%), Query Frame = 0
BLAST of Csor.00g285490 vs. NCBI nr
Match: KAG6589462.1 (39S ribosomal protein L47, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 431 bits (1109), Expect = 2.29e-152 Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0
BLAST of Csor.00g285490 vs. NCBI nr
Match: XP_022921695.1 (39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_022921696.1 39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_022921697.1 39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_023516339.1 39S ribosomal protein L47, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023516340.1 39S ribosomal protein L47, mitochondrial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 276 bits (706), Expect = 4.15e-92 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of Csor.00g285490 vs. NCBI nr
Match: XP_022988417.1 (39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988419.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988420.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima]) HSP 1 Score: 268 bits (685), Expect = 6.55e-89 Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0
BLAST of Csor.00g285490 vs. NCBI nr
Match: XP_038879389.1 (39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida]) HSP 1 Score: 260 bits (664), Expect = 1.07e-85 Identity = 132/140 (94.29%), Postives = 135/140 (96.43%), Query Frame = 0
BLAST of Csor.00g285490 vs. NCBI nr
Match: XP_004138121.1 (39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypothetical protein Csa_013761 [Cucumis sativus]) HSP 1 Score: 252 bits (644), Expect = 1.18e-82 Identity = 128/140 (91.43%), Postives = 132/140 (94.29%), Query Frame = 0
BLAST of Csor.00g285490 vs. ExPASy TrEMBL
Match: A0A6J1E238 (39S ribosomal protein L47, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111429866 PE=3 SV=1) HSP 1 Score: 276 bits (706), Expect = 2.01e-92 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of Csor.00g285490 vs. ExPASy TrEMBL
Match: A0A6J1JCZ2 (39S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111485667 PE=3 SV=1) HSP 1 Score: 268 bits (685), Expect = 3.17e-89 Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0
BLAST of Csor.00g285490 vs. ExPASy TrEMBL
Match: A0A0A0LS48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1) HSP 1 Score: 252 bits (644), Expect = 5.72e-83 Identity = 128/140 (91.43%), Postives = 132/140 (94.29%), Query Frame = 0
BLAST of Csor.00g285490 vs. ExPASy TrEMBL
Match: A0A6J1C2P6 (39S ribosomal protein L47, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007392 PE=3 SV=1) HSP 1 Score: 252 bits (643), Expect = 7.85e-83 Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 0
BLAST of Csor.00g285490 vs. ExPASy TrEMBL
Match: A0A1S3BWK4 (39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926 PE=3 SV=1) HSP 1 Score: 250 bits (639), Expect = 3.30e-82 Identity = 128/140 (91.43%), Postives = 131/140 (93.57%), Query Frame = 0
BLAST of Csor.00g285490 vs. TAIR 10
Match: AT1G07830.1 (ribosomal protein L29 family protein ) HSP 1 Score: 225.3 bits (573), Expect = 4.7e-59 Identity = 116/143 (81.12%), Postives = 126/143 (88.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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