Csor.00g285490 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g285490
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description39S ribosomal protein L47, mitochondrial
LocationCsor_Chr10: 680283 .. 683704 (-)
RNA-Seq ExpressionCsor.00g285490
SyntenyCsor.00g285490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTGACTCGAGTGATTGGGAGAAGATTTCTGGCTGCTGCTAGATCAGAAACTTCCTCTGCCACAGCTGCTGCTTCTACAACTACGATGGGCTACAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAAATGACGACAAACCTGTTGTATATGGTATATTCATATATCGCCTTCAAACTTTGGTCTTCTTTATCAATCTATAAATTTGTAGTTTGGTTCCTTCATTTTGAAGAATTTGTCTCAAAATACTGTTCCTTTGGTGGGTATCTGGTTTGATATCGTGAAATACTGAAATTTGAACTTGAAGTCATGGATAGTCTACTTACTCATGGGAATGAATACAAATTGATCAGATTCAGCCACTGCACTAAAAGAAAATACCCTCCTTGTTGTGTATGGATTTGAAATGCATCTTGATTCATACCGGTTACAGGTTACTTGGTCCAGTTCAAATAATTGGTTACAGGCGGGGACTGTGGATTCTGCTTCATTGATAAAACATCACAAATGTTATATGTTTTATGTTACTGGATTTTACATGATATAATAGATGAAAATGAGTAATTACAAATAACTATGCTGGACAGAGACCTACAGATTTCTCAACACCTGAGAGACACCAAAGTGCTCCAAAAAAAAAAAAAAAAAAAAAAAAATTAGTTTCATCATAATTTCAATAGTATATGTTCTTCTTTGTTTTCTTTGATTACAGGTTTTATTTTAGTACAATTACCTGATTGGTTGCATAGTGAAAATAGGAGCAAGGACTTTAAATAGGTGCAGGCGGCATGATTATGTCTGATCTATCTGCATAGCTTCTATACCTGTCAGTGCTTTCTTATTTCTGAATCTGTGTTATGTGTGCCATGTGATCAGCCCTTGAAAGTTTTATGTGTGTTTTCAGAATTTTTATAAATTGTTTTGTGATGGTTGCTCGTATGATATGATTGTTACGTTAATGTTTTATCATGTTGTCTACTCGTGTGGTTACTCACTTTGAATAAATTTGTGGTACTGGAAAATGCTTGCTCTTTGTCAAAGGCTATTTTGTTTTAGGATACACATTTTTCTCATGTCAATACAGATTTGATCTTTTGCCAAAGTTGTCATATATATATATATATATATACATGCATGTATGTATATGCCCTACTTCTTAGGAATAAAGGTCTCTTAAAAGTTCAAACAACCAAAAACGAAGTATGATGTAATAGATAATTTATGAGATTTAGAAGGTCGTCCCTCTTGGTCACCGCCTGTACTATATAGGAATGAAATATTCCTAAAGTTGTTCGACCCTAATGTTGTAAGCTTAGATACTTGTGCGAGATCCAAATGCCCGTGGATAACCAAAGAACCTCATAGTTTGCAATTAGTTTGTGACGATTGCAGTTTATAGTATAATTAAACAACCGCGGGCTGAAGTACAAAACTCACATGTCTTGCAAAATGTAAGGGATAAAAATCCCATTCATTAGAAGTTAGAAAAAGCTCTGATTCTTATGGCTGAAAGTTTGTGCCTTCTTGAAAAGACATTATTGAGATTCTAATTGCAATTCCTATGCTGTTAGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGATGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTAACGTTGGCAGAGATTTTGTATTATATTTAAATTGTAAATACAAGTTCATTTTGCTTTCTCGCTGTATTTGTTTCTTTCTCCTGCTTCAGTTGTGTGATCTCAGGGCTTGTGATGGTTCTCCTTTCACTACTTTTCTATTATAATGTCGATGGTGGTTGTTGGTGCTCGTAATTTAGGTGCGGAAGTCAATGTGCCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGGTAAACGCTCTGTGATTAGCGAATTCAGCACTTGTATGCAGTGGAGCTTATCATCAAGGTGACAAAAGGAGGAAGTGTTAGCATGATAACGCACGTCCGATACAACGTCTTATCATTCTGTAATCGAGGAGATATCATTAGAAGAAGCCTCGAAAATTGTTCGATGATTTCTAATAATGTTTTATCAACACTAATCAAAGTTTTGAAGATGTTTTAAATTGTGGCAAAGATTAAACAAGGGCCAAGTTTATTATTCTAGAATGTGTGTGTGTACTGATGCATTGGCTTTGATGAGATTCTGTGCAGCGCCTGTCTTGCTTGCTTATTCCAATTCTATTCCCTACAAGAGGGGGCAGAGCCACATGATTGGATTAGACATGCCGCTGCTTTTTTGATTAGCTTCTTGATCAAGACTGTTTATTCATGAGGGTGAACATAGACAGGGGACCCCCAACATCCTTTCTTTCTTTCTTATTGCTCGAGTTAAAACGATGCTGCCATGTGGCACGATCTTGTTGGAAGGAAAAAATTGATTAATGCTGTGTCACCCATTAAAATAGTAATGTGTTGGAACAGCTCTAGACAACCTTAACTTAATCTCCTCCCCTTCCCATAGGAGATATTACGTTGATGGAGTTAGGTGACAGGCGGGGGTGGCGGGGGGGGGGGGGGGCAAAGCTTCACCGGCTGGGTAACCCAATCATCCCCGGAGGAGAAAATTCCCGAAACGGAAAGTGGGAAGTGGGGCCCAGAGATGACGAAAACGGGGCCGCGAAGGGCATTGGATTGAATGTCAGAGCCCCCAAAAACGCAGTTGTGTAATTAAAATGAAAAGTCAAAATTGAAAATAAAAAAATAAAAAGAAAGAGAAAAGAAGAAGAAACATTTTGGGGCACGTTCTACAAAATCACTTGGGGGCGTTGCATCACCGCCATGTTTATTTATCATTAACTCAGCCCGAACTGCCCAATCTACCCCGAACTGCCCGGTCTCGGTTCTCTACCAAGTTACCAAGTACACATTTCCTTTCTGCCGTCTGGCTCTTTCTTTCTCTTCTCCTACAACCCCCCCCCCCCCCTCCCCTCTGTGCGTGCTTTCGATTTTCTCACTCTAGATTCTCGCACTCTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTTCTAGGTTGAAAGGCGGCTCGAAATCATTAATCATCTCTTTGCGTGTGGTTGGATCTGGACTTCAATTCGATCACTCTCTGTTAAATAAGGTAAACCCTAGAATTCGTACTCAATTGGTTCGCCGGTGGGATTTTCGGAAAATCCCTCTTGTCTTTATAGGGACATGATGCCCTGGCAGCGTTATGTATTGATCTAGGGTTTCTCGGTAAGCGGATAGCTTTGAATTGGCTTTCCTCTGTCGAATTAGGGTTAG

mRNA sequence

ATGTTTTTGACTCGAGTGATTGGGAGAAGATTTCTGGCTGCTGCTAGATCAGAAACTTCCTCTGCCACAGCTGCTGCTTCTACAACTACGATGGGCTACAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAAATGACGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGATGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGCGGAAGTCAATGTGCCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGGTGACAGGCGGGGGTGGCGGGGGGGGGGGGGGGCAAAGCTTCACCGGCTGGGTAACCCAATCATCCCCGGAGGAGAAAATTCCCGAAACGGAAACCCGAACTGCCCAATCTACCCCGAACTGCCCGGTCTCGGTTCTCTACCAAGTTACCAAGTTGAAAGGCGGCTCGAAATCATTAATCATCTCTTTGCGTGTGGTTGGATCTGGACTTCAATTCGATCACTCTCTGTTAAATAAGGGTTAG

Coding sequence (CDS)

ATGTTTTTGACTCGAGTGATTGGGAGAAGATTTCTGGCTGCTGCTAGATCAGAAACTTCCTCTGCCACAGCTGCTGCTTCTACAACTACGATGGGCTACAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAAATGACGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGATGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGCGGAAGTCAATGTGCCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGGTGACAGGCGGGGGTGGCGGGGGGGGGGGGGGGCAAAGCTTCACCGGCTGGGTAACCCAATCATCCCCGGAGGAGAAAATTCCCGAAACGGAAACCCGAACTGCCCAATCTACCCCGAACTGCCCGGTCTCGGTTCTCTACCAAGTTACCAAGTTGAAAGGCGGCTCGAAATCATTAATCATCTCTTTGCGTGTGGTTGGATCTGGACTTCAATTCGATCACTCTCTGTTAAATAAGGGTTAG

Protein sequence

MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIDEPDPRRSAEMKRMVTGGGGGGGGGQSFTGWVTQSSPEEKIPETETRTAQSTPNCPVSVLYQVTKLKGGSKSLIISLRVVGSGLQFDHSLLNKG
Homology
[Close]
BLAST of Csor.00g285490 vs. ExPASy Swiss-Prot
Match: Q8K2Y7 (39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 9.0e-15
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 0 

Query: 29  TTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQ 88
           TT+    LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T 
Sbjct: 59  TTLSRKGLEEFFDDPKNWGEEK-VKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTL 118

Query: 89  RQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTER 123
            Q    Q L  P+PER+ KV  SM  + +V+ ER
Sbjct: 119 EQEAKRQRLPMPSPERLEKVVDSMDNVDKVVQER 151

[Close]
BLAST of Csor.00g285490 vs. ExPASy Swiss-Prot
Match: Q08DT6 (39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-14
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 0 

Query: 29  TTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQ 88
           TT+    LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T 
Sbjct: 59  TTLSRRGLEEFFDDPKNWGEEK-VKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTL 118

Query: 89  RQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTER 123
            Q    Q L  P+PER+ KV  SM  + +V+ ER
Sbjct: 119 EQEAKRQRLPMPSPERLEKVVDSMDALDKVVQER 151

[Close]
BLAST of Csor.00g285490 vs. ExPASy Swiss-Prot
Match: Q9HD33 (39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 5.8e-14
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 0 

Query: 29  TTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQ 88
           TT+    LEEFF+  ++   +K V  G +W   +LR KS +DL+KLWYVLLKE+NML+T 
Sbjct: 57  TTLSRKGLEEFFDDPKNWGQEK-VKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNMLLTL 116

Query: 89  RQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTER 123
            Q    Q L  P+PER+ KV  SM  + +V+ ER
Sbjct: 117 EQEAKRQRLPMPSPERLDKVVDSMDALDKVVQER 149

[Close]
BLAST of Csor.00g285490 vs. ExPASy Swiss-Prot
Match: P87232 (54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl4 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-10
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 0 

Query: 34  NPLEEFFEADRS-PNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML 93
           +PL  FF   ++ P   +   +GR+W A ELR KS++DL+ LWY  L+EKN+L TQR  +
Sbjct: 36  HPLWNFFRDKQALPPPSEEAKFGRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQRAEM 95

Query: 94  NAQNLRFP--NPERIPKVRKSMCRIKQVLTER 123
               L  P  + ER+  V K+M  IK VL ER
Sbjct: 96  KRLQLTIPKASNERVLAVNKTMAAIKFVLWER 127

[Close]
BLAST of Csor.00g285490 vs. ExPASy Swiss-Prot
Match: Q2H080 (54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MRPL4 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-09
Identity = 53/146 (36.30%), Postives = 70/146 (47.95%), Query Frame = 0 

Query: 36  LEEFFEADRSPNDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLN 95
           L EFF+      +  P +  +GRSW A ELR KSWDDL++LW+V  KE+N + T     N
Sbjct: 99  LWEFFQNRTMVVNSPPEIAKHGRSWTAEELRHKSWDDLHRLWWVCAKERNRIATANWERN 158

Query: 96  AQNLRFPNP---ERIPKVRKSMCRIKQVLTERAIDEPDPRRSAEMKRMVTGGGGGGGGGQ 155
              L F      ER   VR++M  IK VLTER     D  + AE    V       G G 
Sbjct: 159 KSGLGFGEAEMRERDNAVRQTMRSIKHVLTERFYTWEDAVKVAEKDPEV----DLTGNGP 218

Query: 156 SFTGWVTQSSPEEKIPETETRTAQST 177
           +FT        +    E E + A++T
Sbjct: 219 AFTPSNFLEDSDAAATEGEQQAAEAT 240

[Close]
BLAST of Csor.00g285490 vs. NCBI nr
Match: KAG6589462.1 (39S ribosomal protein L47, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 431 bits (1109), Expect = 2.29e-152
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0 

Query: 1   MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60
           MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA
Sbjct: 1   MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT 120
           SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT
Sbjct: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT 120

Query: 121 ERAIDEPDPRRSAEMKRMVTGGGGGGGGGQSFTGWVTQSSPEEKIPETETRTAQSTPNCP 180
           ERAIDEPDPRRSAEMKRMVTGGGGGGGGGQSFTGWVTQSSPEEKIPETETRTAQSTPNCP
Sbjct: 121 ERAIDEPDPRRSAEMKRMVTGGGGGGGGGQSFTGWVTQSSPEEKIPETETRTAQSTPNCP 180

Query: 181 VSVLYQVTKLKGGSKSLIISLRVVGSGLQFDHSLLNKG 218
           VSVLYQVTKLKGGSKSLIISLRVVGSGLQFDHSLLNKG
Sbjct: 181 VSVLYQVTKLKGGSKSLIISLRVVGSGLQFDHSLLNKG 218

[Close]
BLAST of Csor.00g285490 vs. NCBI nr
Match: XP_022921695.1 (39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_022921696.1 39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_022921697.1 39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_023516339.1 39S ribosomal protein L47, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023516340.1 39S ribosomal protein L47, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 276 bits (706), Expect = 4.15e-92
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 

Query: 1   MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60
           MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA
Sbjct: 1   MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT 120
           SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT
Sbjct: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT 120

Query: 121 ERAIDEPDPRRSAEMKRMV 139
           ERAIDEPDPRRSAEMKRMV
Sbjct: 121 ERAIDEPDPRRSAEMKRMV 139

[Close]
BLAST of Csor.00g285490 vs. NCBI nr
Match: XP_022988417.1 (39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988419.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988420.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima])

HSP 1 Score: 268 bits (685), Expect = 6.55e-89
Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0 

Query: 1   MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60
           MFLTRVIGRRFLAAARSETSSA AAAST T GYNPLEEFFEADRSP+DDKPVVYGRSWKA
Sbjct: 1   MFLTRVIGRRFLAAARSETSSAAAAASTATTGYNPLEEFFEADRSPDDDKPVVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT 120
           SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT
Sbjct: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT 120

Query: 121 ERAIDEPDPRRSAEMKRMV 139
           ERAIDEPDPRRSAEMKRMV
Sbjct: 121 ERAIDEPDPRRSAEMKRMV 139

[Close]
BLAST of Csor.00g285490 vs. NCBI nr
Match: XP_038879389.1 (39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida])

HSP 1 Score: 260 bits (664), Expect = 1.07e-85
Identity = 132/140 (94.29%), Postives = 135/140 (96.43%), Query Frame = 0 

Query: 1   MFLTRVIGRRFLAAARSETSSAT-AAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWK 60
           MFLTRV GR FLAAARSETSSAT AAA+T  MGYNPLEEFFEADRSP+DDKPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATGAAAATARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIDEPDPRRSAEMKRMV 139
           TERAIDEPDPRRSAEMKRM+
Sbjct: 121 TERAIDEPDPRRSAEMKRMI 140

[Close]
BLAST of Csor.00g285490 vs. NCBI nr
Match: XP_004138121.1 (39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypothetical protein Csa_013761 [Cucumis sativus])

HSP 1 Score: 252 bits (644), Expect = 1.18e-82
Identity = 128/140 (91.43%), Postives = 132/140 (94.29%), Query Frame = 0 

Query: 1   MFLTRVIGRRFLAAARSETSSATAAASTTTM-GYNPLEEFFEADRSPNDDKPVVYGRSWK 60
           MFLTRV GR FLAAARSETSSATAAA+ T   GYNPLEEFFEADRSP+D KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120

Query: 121 TERAIDEPDPRRSAEMKRMV 139
           TERAIDEPDPRRSAEMKRM+
Sbjct: 121 TERAIDEPDPRRSAEMKRMI 140

[Close]
BLAST of Csor.00g285490 vs. ExPASy TrEMBL
Match: A0A6J1E238 (39S ribosomal protein L47, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111429866 PE=3 SV=1)

HSP 1 Score: 276 bits (706), Expect = 2.01e-92
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 

Query: 1   MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60
           MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA
Sbjct: 1   MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT 120
           SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT
Sbjct: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT 120

Query: 121 ERAIDEPDPRRSAEMKRMV 139
           ERAIDEPDPRRSAEMKRMV
Sbjct: 121 ERAIDEPDPRRSAEMKRMV 139

[Close]
BLAST of Csor.00g285490 vs. ExPASy TrEMBL
Match: A0A6J1JCZ2 (39S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111485667 PE=3 SV=1)

HSP 1 Score: 268 bits (685), Expect = 3.17e-89
Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0 

Query: 1   MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60
           MFLTRVIGRRFLAAARSETSSA AAAST T GYNPLEEFFEADRSP+DDKPVVYGRSWKA
Sbjct: 1   MFLTRVIGRRFLAAARSETSSAAAAASTATTGYNPLEEFFEADRSPDDDKPVVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT 120
           SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT
Sbjct: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT 120

Query: 121 ERAIDEPDPRRSAEMKRMV 139
           ERAIDEPDPRRSAEMKRMV
Sbjct: 121 ERAIDEPDPRRSAEMKRMV 139

[Close]
BLAST of Csor.00g285490 vs. ExPASy TrEMBL
Match: A0A0A0LS48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1)

HSP 1 Score: 252 bits (644), Expect = 5.72e-83
Identity = 128/140 (91.43%), Postives = 132/140 (94.29%), Query Frame = 0 

Query: 1   MFLTRVIGRRFLAAARSETSSATAAASTTTM-GYNPLEEFFEADRSPNDDKPVVYGRSWK 60
           MFLTRV GR FLAAARSETSSATAAA+ T   GYNPLEEFFEADRSP+D KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120

Query: 121 TERAIDEPDPRRSAEMKRMV 139
           TERAIDEPDPRRSAEMKRM+
Sbjct: 121 TERAIDEPDPRRSAEMKRMI 140

[Close]
BLAST of Csor.00g285490 vs. ExPASy TrEMBL
Match: A0A6J1C2P6 (39S ribosomal protein L47, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007392 PE=3 SV=1)

HSP 1 Score: 252 bits (643), Expect = 7.85e-83
Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 0 

Query: 1   MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60
           MFLTRV GR  LAAARSETSSA AAAST   GYNPLEEFFEADRSP+DDKPVVYGRSWKA
Sbjct: 1   MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT 120
           SELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF NPERIPKVRKSMCRIKQVLT
Sbjct: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSMCRIKQVLT 120

Query: 121 ERAIDEPDPRRSAEMKRMV 139
           ERAI+EPDPRRSAEMKRM+
Sbjct: 121 ERAIEEPDPRRSAEMKRMI 139

[Close]
BLAST of Csor.00g285490 vs. ExPASy TrEMBL
Match: A0A1S3BWK4 (39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926 PE=3 SV=1)

HSP 1 Score: 250 bits (639), Expect = 3.30e-82
Identity = 128/140 (91.43%), Postives = 131/140 (93.57%), Query Frame = 0 

Query: 1   MFLTRVIGRRFLAAARSETSSATAAASTTTM-GYNPLEEFFEADRSPNDDKPVVYGRSWK 60
           MFLTRV GR FLAAARSETSSATAAA+ T   GYNPLEEFFEADRSP+D KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERI KVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERISKVRKSMCRIKHVL 120

Query: 121 TERAIDEPDPRRSAEMKRMV 139
           TERAIDEPDPRRSAEMKRM+
Sbjct: 121 TERAIDEPDPRRSAEMKRMI 140

[Close]
BLAST of Csor.00g285490 vs. TAIR 10
Match: AT1G07830.1 (ribosomal protein L29 family protein )

HSP 1 Score: 225.3 bits (573), Expect = 4.7e-59
Identity = 116/143 (81.12%), Postives = 126/143 (88.11%), Query Frame = 0 

Query: 1   MFLTRVIGRRFLAA--ARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSW 60
           MFLTR +GRRFLAA  ARSE+++A AAAST     NPLEEFFE DRS ++DKPVVYGR W
Sbjct: 1   MFLTRFVGRRFLAAASARSESTTAAAAASTIRTPTNPLEEFFEFDRSQDEDKPVVYGRGW 60

Query: 61  KASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQV 120
           KASELRLKSWDDL KLWYVLLKEKNMLMTQRQML AQN++FPNPERIPKVR+SMCRIK V
Sbjct: 61  KASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLQAQNMQFPNPERIPKVRRSMCRIKHV 120

Query: 121 LTERAIDEPDPRRSAEMKRMVTG 142
           LTERAI+EPD RRSAEMKRMV G
Sbjct: 121 LTERAIEEPDSRRSAEMKRMVNG 143

The following BLAST results are available for this feature:
BLAST of Csor.00g285490 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8K2Y79.0e-1547.8739S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1... [more]
Q08DT61.5e-1447.8739S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV... [more]
Q9HD335.8e-1446.8139S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 ... [more]
P872322.3e-1043.4854S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972... [more]
Q2H0801.9e-0936.3054S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205... [more]
BLAST of Csor.00g285490 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589462.12.29e-152100.0039S ribosomal protein L47, mitochondrial, partial [Cucurbita argyrosperma subsp.... [more]
XP_022921695.14.15e-92100.0039S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_022921696.1 39... [more]
XP_022988417.16.55e-8997.1239S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988419.1 39S ... [more]
XP_038879389.11.07e-8594.2939S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S... [more]
XP_004138121.11.18e-8291.4339S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypotheti... [more]
BLAST of Csor.00g285490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E2382.01e-92100.0039S ribosomal protein L47, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1JCZ23.17e-8997.1239S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A0A0LS485.72e-8391.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1[more]
A0A6J1C2P67.85e-8391.3739S ribosomal protein L47, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A1S3BWK43.30e-8291.4339S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926... [more]
BLAST of Csor.00g285490 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G07830.14.7e-5981.12ribosomal protein L29 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010729Ribosomal protein L47, mitochondrialPFAMPF06984MRP-L47coord: 36..122
e-value: 1.1E-34
score: 118.4
IPR010729Ribosomal protein L47, mitochondrialPANTHERPTHR21183RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATEDcoord: 1..138
IPR038340MRP-L47 superfamily, mitochondrialGENE3D6.10.330.20coord: 32..131
e-value: 1.1E-30
score: 107.7
NoneNo IPR availableCDDcd00427Ribosomal_L29_HIPcoord: 61..122
e-value: 1.1473E-12
score: 58.6531
IPR036049Ribosomal protein L29/L35 superfamilySUPERFAMILY46561Ribosomal protein L29 (L29p)coord: 58..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g285490.m01Csor.00g285490.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006412 translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
cellular_component GO:0005761 mitochondrial ribosome
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome