Csor.00g285240 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g285240
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr10: 817780 .. 818488 (-)
RNA-Seq Expression	Csor.00g285240
Synteny	Csor.00g285240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTTCTATCCCTTTTGGCAGAGTAATTCGCGGGAAATGACGGTAGACTCCGAACTGGATCGAATCGGAAAATTCCCAATCGAAGATGATCCAGGCAGAATTGAAATGAAGTTGAGAATTTCGGAGTTCGTTAAGCCTCGAGCGACGACCAGAGAGAGGGCGGGGGGAAGAGGAAGTGGGCAAAGCATGTTCAATTCAATGGAATTGGAATCGGAGACTTCCAGGTGAAACGTCTAATGGGTATCAACAGAAGCTAGCCTATGGATTCAATGCACTAGTAGGTCGTCGTTAATGATGGTCGTCGTGGGCCGTGGTTTGTTCCCTTGGCCGGTGTAATTCAGTGATTCTTGGGCTACTTTCTAACCTAGTTTTCCGTTGCTGGGGTCTTCCTTCGGCCGCCGTTTCTCGCTATGTGCCTTTTCATGTTGGTGGGTGCTCATGCTCAGAGCTTCTTCAACACGGCTAACGTTGTCACTGGCGTTCGGAATTTCCCGAGTTATAGTGGGAAGGTAAATCTTCCCGAGTTTGAAATTCAATTAACATGATTATGGGTAATTTATTTATCTTGAATACGTAATTAGGGCGCATTCAGCCCTAATTAGTGGTCACTATTGCCAACAATTGCTCCTGAAATATTTCTTTCTTGGATTGTTGTAGGTCGATCATGTTTGAACTCTGGAGGACGAACAATATTACGTGTTAG

mRNA sequence

ATGGCGGTTTTCTATCCCTTTTGGCAGAGTAATTCGCGGGAAATGACGGTAGACTCCGAACTGGATCGAATCGGAAAATTCCCAATCGAAGATGATCCAGGCAGAATTGAAATGAAGTTGAGAATTTCGGAGTTCGTTAAGCCTCGAGCGACGACCAGAGAGAGGGCGGGGGGAAGAGGAAGTGGGCAAAGCATGTTCAATTCAATGGAATTGGAATCGGAGACTTCCAGAGCTTCTTCAACACGGCTAACGTTGTCACTGGCGTTCGGAATTTCCCGAGTTATAGTGGGAAGGTCGATCATGTTTGAACTCTGGAGGACGAACAATATTACGTGTTAG

Coding sequence (CDS)

ATGGCGGTTTTCTATCCCTTTTGGCAGAGTAATTCGCGGGAAATGACGGTAGACTCCGAACTGGATCGAATCGGAAAATTCCCAATCGAAGATGATCCAGGCAGAATTGAAATGAAGTTGAGAATTTCGGAGTTCGTTAAGCCTCGAGCGACGACCAGAGAGAGGGCGGGGGGAAGAGGAAGTGGGCAAAGCATGTTCAATTCAATGGAATTGGAATCGGAGACTTCCAGAGCTTCTTCAACACGGCTAACGTTGTCACTGGCGTTCGGAATTTCCCGAGTTATAGTGGGAAGGTCGATCATGTTTGAACTCTGGAGGACGAACAATATTACGTGTTAG

Protein sequence

MAVFYPFWQSNSREMTVDSELDRIGKFPIEDDPGRIEMKLRISEFVKPRATTRERAGGRGSGQSMFNSMELESETSRASSTRLTLSLAFGISRVIVGRSIMFELWRTNNITC

Homology

[Close]

BLAST of Csor.00g285240 vs. NCBI nr
Match: KAG6589487.1 (hypothetical protein SDJN03_14910, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 222 bits (566), Expect = 4.91e-73
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MAVFYPFWQSNSREMTVDSELDRIGKFPIEDDPGRIEMKLRISEFVKPRATTRERAGGRG 60
           MAVFYPFWQSNSREMTVDSELDRIGKFPIEDDPGRIEMKLRISEFVKPRATTRERAGGRG
Sbjct: 1   MAVFYPFWQSNSREMTVDSELDRIGKFPIEDDPGRIEMKLRISEFVKPRATTRERAGGRG 60

Query: 61  SGQSMFNSMELESETSRASSTRLTLSLAFGISRVIVGRSIMFELWRTNNITC 112
           SGQSMFNSMELESETSRASSTRLTLSLAFGISRVIVGRSIMFELWRTNNITC
Sbjct: 61  SGQSMFNSMELESETSRASSTRLTLSLAFGISRVIVGRSIMFELWRTNNITC 112

[Close]

BLAST of Csor.00g285240 vs. NCBI nr
Match: KAG7023172.1 (hypothetical protein SDJN02_14197, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191 bits (485), Expect = 7.15e-61
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 15  MTVDSELDRIGKFPIEDDPGRIEMKLRISEFVKPRATTRERAGGRGSGQSMFNSMELESE 74
           MTVDSELDRIGKFPIEDDPGRIEMKLRISEFVKPRATTRERAGGRGSGQSMFNSMELESE
Sbjct: 1   MTVDSELDRIGKFPIEDDPGRIEMKLRISEFVKPRATTRERAGGRGSGQSMFNSMELESE 60

Query: 75  TSRASSTRLTLSLAFGISRVIVGRSIMFELWRTNNITC 112
           TSRASSTRLTLSLAFGISRVIVGRSIMFELWRTNNITC
Sbjct: 61  TSRASSTRLTLSLAFGISRVIVGRSIMFELWRTNNITC 98

The following BLAST results are available for this feature:

BLAST of Csor.00g285240 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g285240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589487.1	4.91e-73	100.00	hypothetical protein SDJN03_14910, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7023172.1	7.15e-61	100.00	hypothetical protein SDJN02_14197, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Csor.00g285240 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g285240 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g285240.m01	Csor.00g285240.m01	mRNA