Csor.00g284260 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g284260
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr10: 1278488 .. 1278835 (+)
RNA-Seq Expression	Csor.00g284260
Synteny	Csor.00g284260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCACTTCTTCCTCTCTACCCTGCACATCACGATCTCCCCCGCTGCATCTTACAACAATTACAATTTCCCCTCCTAATCCGACGAGATCCACCGCCAATGCCAACCAGTTCCTCACCGATTCAACCCCAGAGTCTCAATCTCAAAACTCTTCACACATTACCGTAAAAACCGCGCTGAAATTGTCAGTCTCCCAAGACTCCGCCGCATCTAAACTCACCCAACTCCTACTGCATTTCCCAGATCAATTAAAGCCTCTGAATGGGATCGTCCCAATTGGGAAGAGAAATTCAAATCCCGAAATGGAATTGGTTGGTCCGCCGACAAAAATGCCGACCCCCCACTGA

mRNA sequence

ATGACCACTTCTTCCTCTCTACCCTGCACATCACGATCTCCCCCGCTGCATCTTACAACAATTACAATTTCCCCTCCTAATCCGACGAGATCCACCGCCAATGCCAACCAGTTCCTCACCGATTCAACCCCAGAGTCTCAATCTCAAAACTCTTCACACATTACCGTAAAAACCGCGCTGAAATTGTCAGTCTCCCAAGACTCCGCCGCATCTAAACTCACCCAACTCCTACTGCATTTCCCAGATCAATTAAAGCCTCTGAATGGGATCGTCCCAATTGGGAAGAGAAATTCAAATCCCGAAATGGAATTGGTTGGTCCGCCGACAAAAATGCCGACCCCCCACTGA

Coding sequence (CDS)

ATGACCACTTCTTCCTCTCTACCCTGCACATCACGATCTCCCCCGCTGCATCTTACAACAATTACAATTTCCCCTCCTAATCCGACGAGATCCACCGCCAATGCCAACCAGTTCCTCACCGATTCAACCCCAGAGTCTCAATCTCAAAACTCTTCACACATTACCGTAAAAACCGCGCTGAAATTGTCAGTCTCCCAAGACTCCGCCGCATCTAAACTCACCCAACTCCTACTGCATTTCCCAGATCAATTAAAGCCTCTGAATGGGATCGTCCCAATTGGGAAGAGAAATTCAAATCCCGAAATGGAATTGGTTGGTCCGCCGACAAAAATGCCGACCCCCCACTGA

Protein sequence

MTTSSSLPCTSRSPPLHLTTITISPPNPTRSTANANQFLTDSTPESQSQNSSHITVKTALKLSVSQDSAASKLTQLLLHFPDQLKPLNGIVPIGKRNSNPEMELVGPPTKMPTPH

Homology

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BLAST of Csor.00g284260 vs. NCBI nr
Match: KAG6589585.1 (hypothetical protein SDJN03_15008, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216 bits (549), Expect = 2.40e-70
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MTTSSSLPCTSRSPPLHLTTITISPPNPTRSTANANQFLTDSTPESQSQNSSHITVKTAL 60
           MTTSSSLPCTSRSPPLHLTTITISPPNPTRSTANANQFLTDSTPESQSQNSSHITVKTAL
Sbjct: 1   MTTSSSLPCTSRSPPLHLTTITISPPNPTRSTANANQFLTDSTPESQSQNSSHITVKTAL 60

Query: 61  KLSVSQDSAASKLTQLLLHFPDQLKPLNGIVPIGKRNSNPEMELVGPPTKMPTPH 115
           KLSVSQDSAASKLTQLLLHFPDQLKPLNGIVPIGKRNSNPEMELVGPPTKMPTPH
Sbjct: 61  KLSVSQDSAASKLTQLLLHFPDQLKPLNGIVPIGKRNSNPEMELVGPPTKMPTPH 115

The following BLAST results are available for this feature:

BLAST of Csor.00g284260 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g284260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589585.1	2.40e-70	100.00	hypothetical protein SDJN03_15008, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g284260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g284260 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g284260.m01	Csor.00g284260.m01	mRNA