Csor.00g282970 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g282970
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	reticulocalbin-2 isoform X1
Location	Csor_Chr16: 167250 .. 167531 (+)
RNA-Seq Expression	Csor.00g282970
Synteny	Csor.00g282970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGCCAAAGCCTCGGCTTGTGTTTAATATGCAGGCACATGGACCATGACAGAGATGGAAAGCTCAATTTTGATGAATTTCTCCACCATACCTATGATATATACAACAGCTATATCGAATTCCAAACTCGAGGGGACGATGTACCGAGCGCGGAAGAGAAGTTCGATGAGCTTGATCTTGTTTTCTATTTTGATAGATACAAGAGCTGTAACTCACCCACCCCTCTGGATTTTGATACTAAGATGAGCCTTGGTCACTCTCCTAACAAGGTACTGTAA

mRNA sequence

ATGGAAAGCCAAAGCCTCGGCTTGTGTTTAATATGCAGGCACATGGACCATGACAGAGATGGAAAGCTCAATTTTGATGAATTTCTCCACCATACCTATGATATATACAACAGCTATATCGAATTCCAAACTCGAGGGGACGATGTACCGAGCGCGGAAGAGAAGTTCGATGAGCTTGATCTTGTTTTCTATTTTGATAGATACAAGAGCTGTAACTCACCCACCCCTCTGGATTTTGATACTAAGATGAGCCTTGGTCACTCTCCTAACAAGGTACTGTAA

Coding sequence (CDS)

ATGGAAAGCCAAAGCCTCGGCTTGTGTTTAATATGCAGGCACATGGACCATGACAGAGATGGAAAGCTCAATTTTGATGAATTTCTCCACCATACCTATGATATATACAACAGCTATATCGAATTCCAAACTCGAGGGGACGATGTACCGAGCGCGGAAGAGAAGTTCGATGAGCTTGATCTTGTTTTCTATTTTGATAGATACAAGAGCTGTAACTCACCCACCCCTCTGGATTTTGATACTAAGATGAGCCTTGGTCACTCTCCTAACAAGGTACTGTAA

Protein sequence

MESQSLGLCLICRHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDLVFYFDRYKSCNSPTPLDFDTKMSLGHSPNKVL

Homology

[Close]

BLAST of Csor.00g282970 vs. NCBI nr
Match: KAG6576643.1 (hypothetical protein SDJN03_24217, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202 bits (513), Expect = 1.49e-65
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MESQSLGLCLICRHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELD 60
          MESQSLGLCLICRHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELD
Sbjct: 1  MESQSLGLCLICRHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELD 60

Query: 61 LVFYFDRYKSCNSPTPLDFDTKMSLGHSPNKVL 93
          LVFYFDRYKSCNSPTPLDFDTKMSLGHSPNKVL
Sbjct: 61 LVFYFDRYKSCNSPTPLDFDTKMSLGHSPNKVL 93

[Close]

BLAST of Csor.00g282970 vs. NCBI nr
Match: XP_008455987.1 (PREDICTED: reticulocalbin-2 [Cucumis melo] >KAA0050524.1 reticulocalbin-2 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 9.77e-22
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 13  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL 61
           + MDHDRDGKLNFDEFLHHTYDIY +YIEF+T+GDD+P+AEEKFDELDL
Sbjct: 217 KRMDHDRDGKLNFDEFLHHTYDIYKNYIEFETQGDDIPTAEEKFDELDL 265

[Close]

BLAST of Csor.00g282970 vs. NCBI nr
Match: XP_011651314.1 (reticulocalbin-2 [Cucumis sativus] >KGN57652.1 hypothetical protein Csa_010748 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.62e-21
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 13  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL 61
           + MDHD+DGKLNFDEFLHHTYDIY +YIEF+T+G+DVPSAEEKFDELDL
Sbjct: 217 KRMDHDKDGKLNFDEFLHHTYDIYKNYIEFETQGEDVPSAEEKFDELDL 265

[Close]

BLAST of Csor.00g282970 vs. NCBI nr
Match: TYK11288.1 (reticulocalbin-2 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 5.15e-21
Identity = 40/49 (81.63%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 13  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL 61
           + MDHDRDGKLNFDEFLHHTY+IY +YIEF+T+GDD+P+AEEKFDELDL
Sbjct: 217 KRMDHDRDGKLNFDEFLHHTYNIYKNYIEFETQGDDIPTAEEKFDELDL 265

[Close]

BLAST of Csor.00g282970 vs. NCBI nr
Match: XP_022945266.1 (45 kDa calcium-binding protein isoform X2 [Cucurbita moschata])

HSP 1 Score: 92.8 bits (229), Expect = 3.76e-20
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 13  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL 61
           + MD+DRDGKL+FDEFLHH YDIY SYIEF+T+GDDVP+AEEKFDELDL
Sbjct: 191 KRMDYDRDGKLSFDEFLHHAYDIYKSYIEFETQGDDVPTAEEKFDELDL 239

[Close]

BLAST of Csor.00g282970 vs. ExPASy TrEMBL
Match: A0A5A7U5L5 (Reticulocalbin-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001680 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.73e-22
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 13  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL 61
           + MDHDRDGKLNFDEFLHHTYDIY +YIEF+T+GDD+P+AEEKFDELDL
Sbjct: 217 KRMDHDRDGKLNFDEFLHHTYDIYKNYIEFETQGDDIPTAEEKFDELDL 265

[Close]

BLAST of Csor.00g282970 vs. ExPASy TrEMBL
Match: A0A1S3C255 (reticulocalbin-2 OS=Cucumis melo OX=3656 GN=LOC103496051 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.73e-22
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 13  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL 61
           + MDHDRDGKLNFDEFLHHTYDIY +YIEF+T+GDD+P+AEEKFDELDL
Sbjct: 217 KRMDHDRDGKLNFDEFLHHTYDIYKNYIEFETQGDDIPTAEEKFDELDL 265

[Close]

BLAST of Csor.00g282970 vs. ExPASy TrEMBL
Match: A0A0A0LAH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238180 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.27e-21
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 13  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL 61
           + MDHD+DGKLNFDEFLHHTYDIY +YIEF+T+G+DVPSAEEKFDELDL
Sbjct: 217 KRMDHDKDGKLNFDEFLHHTYDIYKNYIEFETQGEDVPSAEEKFDELDL 265

[Close]

BLAST of Csor.00g282970 vs. ExPASy TrEMBL
Match: A0A5D3CJD2 (Reticulocalbin-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001480 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.50e-21
Identity = 40/49 (81.63%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 13  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL 61
           + MDHDRDGKLNFDEFLHHTY+IY +YIEF+T+GDD+P+AEEKFDELDL
Sbjct: 217 KRMDHDRDGKLNFDEFLHHTYNIYKNYIEFETQGDDIPTAEEKFDELDL 265

[Close]

BLAST of Csor.00g282970 vs. ExPASy TrEMBL
Match: A0A6J1G0D5 (45 kDa calcium-binding protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449565 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.82e-20
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 13  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL 61
           + MD+DRDGKL+FDEFLHH YDIY SYIEF+T+GDDVP+AEEKFDELDL
Sbjct: 191 KRMDYDRDGKLSFDEFLHHAYDIYKSYIEFETQGDDVPTAEEKFDELDL 239

The following BLAST results are available for this feature:

BLAST of Csor.00g282970 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g282970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576643.1	1.49e-65	100.00	hypothetical protein SDJN03_24217, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008455987.1	9.77e-22	83.67	PREDICTED: reticulocalbin-2 [Cucumis melo] >KAA0050524.1 reticulocalbin-2 [Cucum...	[more]
XP_011651314.1	2.62e-21	83.67	reticulocalbin-2 [Cucumis sativus] >KGN57652.1 hypothetical protein Csa_010748 [...	[more]
TYK11288.1	5.15e-21	81.63	reticulocalbin-2 [Cucumis melo var. makuwa]	[more]
XP_022945266.1	3.76e-20	81.63	45 kDa calcium-binding protein isoform X2 [Cucurbita moschata]	[more]

BLAST of Csor.00g282970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U5L5	4.73e-22	83.67	Reticulocalbin-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001...	[more]
A0A1S3C255	4.73e-22	83.67	reticulocalbin-2 OS=Cucumis melo OX=3656 GN=LOC103496051 PE=4 SV=1	[more]
A0A0A0LAH3	1.27e-21	83.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238180 PE=4 SV=1	[more]
A0A5D3CJD2	2.50e-21	81.63	Reticulocalbin-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001...	[more]
A0A6J1G0D5	1.82e-20	81.63	45 kDa calcium-binding protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of Csor.00g282970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10827:SF77	CALCIUM-BINDING EF HAND FAMILY PROTEIN	coord: 13..61
None	No IPR available	PANTHER	PTHR10827	RETICULOCALBIN	coord: 13..61
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 16..28
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 11..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g282970.m01	Csor.00g282970.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005509	calcium ion binding