Csor.00g282930 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g282930
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	EKC/KEOPS complex, subunit Pcc1
Location	Csor_Chr16: 179392 .. 180478 (+)
RNA-Seq Expression	Csor.00g282930
Synteny	Csor.00g282930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCGACACCTTCCGTCGCTTCTGATGGAGAGCCCAAGTGGGAATTCAGCTGGTTGTTCTCTCTTTCTCTAACCCCATAAATGTATATTTACATGCTTTCCTTCGATTGTATGCCATATGCTTTTATATCAGTTTGTTCGTTGATGTTGCTGTGTTGGCTTTTGGGTGAGCTTCGCCTTTTTAGCTTTATCATATTTCTCTTGTGATTAATCGGTTATGTTCTTTCTCTGGTTCACTGGTTTTTCCACGGGGGGGAAAAAAAAGACAATGATGATGATGATGTTCTTGCAACTGGCAAGCCATTTTTACCCCGAAAGCTCAAATTTTTGTTTTGTGACTAGAGTAGTGTCTCGAAAGCTCAGAAAAGCCATTAATTCTCAATTGTTGGAATGATGGACCTTTTTAACTAGCCAAAGCTCTGATCTTTCGCTGTGGTTCCTGGAAGCAAATGATGTTTTTTGGGTCTTGCCAGCGATCAACCATTGCTATTTTATCTTTCATCTTTTCTTGATTGCCTTCCTAGAGAGACAGAACAAGTAATTTGCCTCTTTTTCCAAGTATTGAATCTGGTTTGCTCTCTGCAGTGACCTTGAAGTCGATTATGAGTCAGAGAAGAAAGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGGTGCTTCTCCATGATATCAATCTTCACATTGTGCCTCCGTATAGTTAACTTGTTTCTGATTCCATTTCTGTGCTAAGTACAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATGTGAGCCTCTTTTTCTCTTCGAATCCCTGGTTCTTAATGTACGATTAACAGTAGATAGATACCAAAATAGCTTAATGCAGGATTCTTTTGAGCATTAGTAAGGCTGCTGCGTTCATATTTCTCTGCAATCATGTTTTGGCATTCCCATTAGCTGCTCATTTTTTTTCTCGTAGACACCTTGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGGAGTGGATTTCTGA

mRNA sequence

ATGGCTCCGACACCTTCCGTCGCTTCTGATGGAGAGCCCAAGTGGGAATTCAGCTGTGACCTTGAAGTCGATTATGAGTCAGAGAAGAAAGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATACACCTTGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGGAGTGGATTTCTGA

Coding sequence (CDS)

ATGGCTCCGACACCTTCCGTCGCTTCTGATGGAGAGCCCAAGTGGGAATTCAGCTGTGACCTTGAAGTCGATTATGAGTCAGAGAAGAAAGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATACACCTTGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGGAGTGGATTTCTGA

Protein sequence

MAPTPSVASDGEPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF

Homology

[Close]

BLAST of Csor.00g282930 vs. NCBI nr
Match: KAG6576647.1 (hypothetical protein SDJN03_24221, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195 bits (495), Expect = 1.29e-62
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MAPTPSVASDGEPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          MAPTPSVASDGEPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL
Sbjct: 1  MAPTPSVASDGEPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60

Query: 61 SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99
          SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF
Sbjct: 61 SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99

[Close]

BLAST of Csor.00g282930 vs. NCBI nr
Match: KAG7014698.1 (hypothetical protein SDJN02_22327 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190 bits (482), Expect = 1.24e-60
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1  MAPTPSVASDGEPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          MAPTPS+AS G+PKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL
Sbjct: 1  MAPTPSLASHGDPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60

Query: 61 SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99
          SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF
Sbjct: 61 SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99

[Close]

BLAST of Csor.00g282930 vs. NCBI nr
Match: XP_023553191.1 (uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188 bits (477), Expect = 7.17e-60
Identity = 95/99 (95.96%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1  MAPTPSVASDGEPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M PTPSVASDGEP WEFSCD EVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL
Sbjct: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60

Query: 61 SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99
          SIH EAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF
Sbjct: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99

[Close]

BLAST of Csor.00g282930 vs. NCBI nr
Match: XP_038895564.1 (uncharacterized protein LOC120083771 [Benincasa hispida])

HSP 1 Score: 176 bits (445), Expect = 5.47e-55
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1  MAPTPSVASDGEPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          MAPT SVASDGE KWEFSCD EVDYESEKKASIVY AL+VDKELQPDKVKR M+VSDGKL
Sbjct: 1  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRVMSVSDGKL 60

Query: 61 SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99
          SIH EAVEARFLRASFSAFVDVLTLATKT+EDFGQ VDF
Sbjct: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTVEDFGQEVDF 99

[Close]

BLAST of Csor.00g282930 vs. NCBI nr
Match: XP_022141079.1 (uncharacterized protein LOC111011564 [Momordica charantia])

HSP 1 Score: 174 bits (442), Expect = 3.23e-54
Identity = 88/98 (89.80%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1   MAPTPSVASDGEPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
           MAPT SVASDGE KWEF CD EVDYESEKKASIVY AL VDKELQPDKVKREM VSDGKL
Sbjct: 24  MAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKL 83

Query: 61  SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVD 98
           S+H EAVEARFLRASFSAFVDVLTLATKTIEDFGQG+D
Sbjct: 84  SVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGLD 121

[Close]

BLAST of Csor.00g282930 vs. ExPASy TrEMBL
Match: A0A6J1CHJ5 (uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011564 PE=3 SV=1)

HSP 1 Score: 174 bits (442), Expect = 1.57e-54
Identity = 88/98 (89.80%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1   MAPTPSVASDGEPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
           MAPT SVASDGE KWEF CD EVDYESEKKASIVY AL VDKELQPDKVKREM VSDGKL
Sbjct: 24  MAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKL 83

Query: 61  SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVD 98
           S+H EAVEARFLRASFSAFVDVLTLATKTIEDFGQG+D
Sbjct: 84  SVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGLD 121

[Close]

BLAST of Csor.00g282930 vs. ExPASy TrEMBL
Match: A0A6J1G2C3 (uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC111450028 PE=3 SV=1)

HSP 1 Score: 171 bits (434), Expect = 1.26e-53
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1  MAPTPSVASDGEPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          MAPT SV SDG+ KWEFSCD EVD ESEKKASIVY ALVVDKELQPDKVKREMTVSDGKL
Sbjct: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60

Query: 61 SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99
          S+H EAVEARFLRAS+SAF+DVLTLA KTIEDFGQG+DF
Sbjct: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99

[Close]

BLAST of Csor.00g282930 vs. ExPASy TrEMBL
Match: A0A0A0L7A2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=3 SV=1)

HSP 1 Score: 172 bits (437), Expect = 2.75e-53
Identity = 89/99 (89.90%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MAPTPSVASDGEPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
           M PT SVAS GEPKWEFSCD EVDYESEKKASIVYKALVVDKELQPDKVKR M+ SDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99
           SIH EAVEARFLRASFSAFVDVLTLATKTIEDFGQ  DF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

[Close]

BLAST of Csor.00g282930 vs. ExPASy TrEMBL
Match: A0A1S3CTG0 (uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=3 SV=1)

HSP 1 Score: 167 bits (423), Expect = 6.00e-52
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1  MAPTPSVASDGEPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M PT SVASDGE KWEFSCD EVDYESEKKASIVY AL+VDKELQPDKVKR M++S+GKL
Sbjct: 1  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61 SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99
          SIH EAVEARFLRASFS+FVDVLTLATKTIEDFG  V+F
Sbjct: 61 SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

[Close]

BLAST of Csor.00g282930 vs. ExPASy TrEMBL
Match: A0A5D3CJ23 (EKC/KEOPS complex, subunit Pcc1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001520 PE=3 SV=1)

HSP 1 Score: 167 bits (423), Expect = 6.00e-52
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1  MAPTPSVASDGEPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M PT SVASDGE KWEFSCD EVDYESEKKASIVY AL+VDKELQPDKVKR M++S+GKL
Sbjct: 1  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61 SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99
          SIH EAVEARFLRASFS+FVDVLTLATKTIEDFG  V+F
Sbjct: 61 SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

[Close]

BLAST of Csor.00g282930 vs. TAIR 10
Match: AT5G53045.1 (unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-28
Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 1  MAPTPSVASDGEPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          MA T    +  +  W+FSC+L+V +ESE+ A I Y +L VDKELQPDKV+R M+VS+ KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 61 SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 96
          S+H EA+EAR LRASFSAFVDVLTLAT+TI++FGQ
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQ 95

The following BLAST results are available for this feature:

BLAST of Csor.00g282930 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g282930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576647.1	1.29e-62	100.00	hypothetical protein SDJN03_24221, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014698.1	1.24e-60	96.97	hypothetical protein SDJN02_22327 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023553191.1	7.17e-60	95.96	uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo]	[more]
XP_038895564.1	5.47e-55	89.90	uncharacterized protein LOC120083771 [Benincasa hispida]	[more]
XP_022141079.1	3.23e-54	89.80	uncharacterized protein LOC111011564 [Momordica charantia]	[more]

BLAST of Csor.00g282930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHJ5	1.57e-54	89.80	uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1G2C3	1.26e-53	86.87	uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC1114500...	[more]
A0A0A0L7A2	2.75e-53	89.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=3 SV=1	[more]
A0A1S3CTG0	6.00e-52	84.85	uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=...	[more]
A0A5D3CJ23	6.00e-52	84.85	EKC/KEOPS complex, subunit Pcc1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Csor.00g282930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53045.1	1.9e-28	63.16	unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.310.50		coord: 7..97 e-value: 6.5E-23 score: 82.5
None	No IPR available	PANTHER	PTHR31283:SF5	GEO08993P1	coord: 10..95
IPR015419	CTAG/Pcc1 family	PFAM	PF09341	Pcc1	coord: 18..91 e-value: 2.2E-19 score: 69.4
IPR015419	CTAG/Pcc1 family	PANTHER	PTHR31283	EKC/KEOPS COMPLEX SUBUNIT PCC1 FAMILY MEMBER	coord: 10..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g282930.m01	Csor.00g282930.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process
cellular_component	GO:0000408	EKC/KEOPS complex