Csor.00g282580 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCATCACTTTTGCTTTTCAGTCTCTCTGTACCAATGTTTTCCCATCTCCCGTTTCAAATCATCCCGAAATTTCATCGATTTGGCGTCCCATTTCCACTAAACTCCCACAATTACGCAACCCCATCTCTCAATCCTTGAGGAAAAGCTTGAGCATTGTCTCTTCCAAGTCATCCGAGGCAGAGGAGCTCTCTGCTCCAGAGGACGAGTGGCTGAACAAGCTTCCGGAAAAGAAGAAGCCCTTGTACTCTCACAGTTTGCCTTGCATCGAGGCTTGGTTGAAGAACTTGGGATTTTACCAGAGTAACGAGGACCGAGCCGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCCCTGGATGTCACCGACCTCTATATAAGGTTCGCAATAGGTCTCCTTTTTGTGATTTTATGACATGGATTTGTGTTTTTCAATCTGGCTTTTGGTTCTTTATCGTTTAATTGCGTTTTCTGATTAGGGTTATTTCGTGAATTGAATTGTTGGAGTTGCCCTACATGTTACTTTCTTATCAGGAAACAAACGTTAGTTTGAGAATTTTGTTGGAGTCCTTTTCCCATGATTTTTCTTTAGGTTGTTTAACTTGTGTAAGATATCGATGGCATTTTGATTCTGGGGTTGTGTTCATTCAGGCATCCATATGACAACTGCTTCGTTTAGTTTGCTTAAGTGATATGCTTGTTTTATGTATTAAATCTCCACAGAGAATAGAAAACTGATGCCTTGCAGTTGTCATTATTGAAACTATGGTCAAGATTGAGCTGGGAGAATGGGCAATTCTCTATTATTTGGCCTCTGGACTGGTTATAATAGAGAGGTGGGTTTGTAAATGGTTAAGTAGGATATTGAGCGTGTAAAATTTTGAGGTATTGAGCAGTCAACCATCCACTCTCGAGATTCATATGGATCAATCGACCTCGAATGCAATATAATTGTCCAGAAAGAGGGAGAGAGTTTGCAGTGTGTAAACTTCAAAGGTTGCTTACAACGTTTAAATGGAAACGGGATCTGTTCCGGTTTTCAGCGGTCTATATTGAAGTGTGAACATTTTGCAGATGCAAAAGAACATTAGTCATTCCTGCAAATGGAGGACCTTAGTTTAGGCTCCTCTGTTACATCCAGTTCAATTTATCCTTGTAATATAGATTTAGTTGCACAGCCTAGCTCAGTCTCTTTTCCACATGCCAGTAACTTTCCCAACAGATGACCAGGGAGAATTGTTATAGCCTGGCTGTTACCGTTGTTTTGAAACTTGATCGGGTTTTAAATTCTCTTGGTTGCTCGTAAACGTCTTGCAGTGCACCAAAATGTTTAAATCACGAATGAAACTTCCCCAACTTTTTGGTTGTGAGAGTAGAGAGAGGCTAGCTGGTGCATTTCAATTCTGGCTTTTGAGTCTGATAATTTGTTATCAATTGTTCTGTAAGAATACTTTCTTTCTTACGATTCGATTGTCAAACACAACTATTATACAATATAAGAAAACGATGATAACCTTCCAGCAATCTCGAGAGTGCCAGAAATTGAACCGTTGTTCCATCCAAAATACAAAGCATAGTGATAACAAAGAGACTACTTACTAATATACAAACCTCCCTAAACGAATTATCTTCGAGTCAATTCCCATGTTACCTCTTCTAGTGAATACACGATTGGGGCCGAAGACATTGCCCCCAACTCATCACTCACACGCGCACACACGAGAAGGTAAACAGGAACTGAAAATGCCAGTTCTGTTACTAGCTTTGAATTTGATAGTTACACAATGCACATGTTGGTTTTGCAGGTATCTAAAGAGTGGACCAGGAAATCTTGAGAAAGACGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAACGCTGTACTCGGAGGACCTTGA ATGTCCATCACTTTTGCTTTTCAGTCTCTCTGTACCAATGTTTTCCCATCTCCCGTTTCAAATCATCCCGAAATTTCATCGATTTGGCGTCCCATTTCCACTAAACTCCCACAATTACGCAACCCCATCTCTCAATCCTTGAGGAAAAGCTTGAGCATTGTCTCTTCCAAGTCATCCGAGGCAGAGGAGCTCTCTGCTCCAGAGGACGAGTGGCTGAACAAGCTTCCGGAAAAGAAGAAGCCCTTGTACTCTCACAGTTTGCCTTGCATCGAGGCTTGGTTGAAGAACTTGGGATTTTACCAGAGTAACGAGGACCGAGCCGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCCCTGGATGTCACCGACCTCTATATAAGGTATCTAAAGAGTGGACCAGGAAATCTTGAGAAAGACGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAACGCTGTACTCGGAGGACCTTGA ATGTCCATCACTTTTGCTTTTCAGTCTCTCTGTACCAATGTTTTCCCATCTCCCGTTTCAAATCATCCCGAAATTTCATCGATTTGGCGTCCCATTTCCACTAAACTCCCACAATTACGCAACCCCATCTCTCAATCCTTGAGGAAAAGCTTGAGCATTGTCTCTTCCAAGTCATCCGAGGCAGAGGAGCTCTCTGCTCCAGAGGACGAGTGGCTGAACAAGCTTCCGGAAAAGAAGAAGCCCTTGTACTCTCACAGTTTGCCTTGCATCGAGGCTTGGTTGAAGAACTTGGGATTTTACCAGAGTAACGAGGACCGAGCCGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCCCTGGATGTCACCGACCTCTATATAAGGTATCTAAAGAGTGGACCAGGAAATCTTGAGAAAGACGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAACGCTGTACTCGGAGGACCTTGA MSITFAFQSLCTNVFPSPVSNHPEISSIWRPISTKLPQLRNPISQSLRKSLSIVSSKSSEAEELSAPEDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP Homology
BLAST of Csor.00g282580 vs. NCBI nr
Match: KAG6576682.1 (hypothetical protein SDJN03_24256, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014732.1 hypothetical protein SDJN02_22361 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 333 bits (853), Expect = 4.04e-115 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of Csor.00g282580 vs. NCBI nr
Match: XP_022922878.1 (uncharacterized protein LOC111430721 [Cucurbita moschata] >XP_023552331.1 uncharacterized protein LOC111810028 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 331 bits (849), Expect = 1.65e-114 Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of Csor.00g282580 vs. NCBI nr
Match: XP_022984153.1 (uncharacterized protein LOC111482568 [Cucurbita maxima]) HSP 1 Score: 328 bits (841), Expect = 2.74e-113 Identity = 162/164 (98.78%), Postives = 162/164 (98.78%), Query Frame = 0
BLAST of Csor.00g282580 vs. NCBI nr
Match: XP_038880287.1 (uncharacterized protein LOC120071904 [Benincasa hispida]) HSP 1 Score: 314 bits (805), Expect = 8.75e-108 Identity = 153/164 (93.29%), Postives = 156/164 (95.12%), Query Frame = 0
BLAST of Csor.00g282580 vs. NCBI nr
Match: XP_008439322.1 (PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo] >KAA0033736.1 hypothetical protein E6C27_scaffold239G002110 [Cucumis melo var. makuwa] >TYK23028.1 hypothetical protein E5676_scaffold386G001400 [Cucumis melo var. makuwa]) HSP 1 Score: 310 bits (795), Expect = 2.83e-106 Identity = 151/164 (92.07%), Postives = 156/164 (95.12%), Query Frame = 0
BLAST of Csor.00g282580 vs. ExPASy TrEMBL
Match: A0A6J1E806 (uncharacterized protein LOC111430721 OS=Cucurbita moschata OX=3662 GN=LOC111430721 PE=4 SV=1) HSP 1 Score: 331 bits (849), Expect = 7.98e-115 Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of Csor.00g282580 vs. ExPASy TrEMBL
Match: A0A6J1J9Q7 (uncharacterized protein LOC111482568 OS=Cucurbita maxima OX=3661 GN=LOC111482568 PE=4 SV=1) HSP 1 Score: 328 bits (841), Expect = 1.32e-113 Identity = 162/164 (98.78%), Postives = 162/164 (98.78%), Query Frame = 0
BLAST of Csor.00g282580 vs. ExPASy TrEMBL
Match: A0A5D3DHV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G001400 PE=4 SV=1) HSP 1 Score: 310 bits (795), Expect = 1.37e-106 Identity = 151/164 (92.07%), Postives = 156/164 (95.12%), Query Frame = 0
BLAST of Csor.00g282580 vs. ExPASy TrEMBL
Match: A0A1S3AY50 (uncharacterized protein LOC103484146 OS=Cucumis melo OX=3656 GN=LOC103484146 PE=4 SV=1) HSP 1 Score: 310 bits (795), Expect = 1.37e-106 Identity = 151/164 (92.07%), Postives = 156/164 (95.12%), Query Frame = 0
BLAST of Csor.00g282580 vs. ExPASy TrEMBL
Match: A0A6J1CHI2 (uncharacterized protein LOC111011693 OS=Momordica charantia OX=3673 GN=LOC111011693 PE=4 SV=1) HSP 1 Score: 291 bits (746), Expect = 4.06e-99 Identity = 143/164 (87.20%), Postives = 151/164 (92.07%), Query Frame = 0
BLAST of Csor.00g282580 vs. TAIR 10
Match: AT5G52960.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3143 (InterPro:IPR021489); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 208.0 bits (528), Expect = 5.8e-54 Identity = 108/170 (63.53%), Postives = 131/170 (77.06%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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