Csor.00g282080 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g282080
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr16: 602521 .. 603477 (+)
RNA-Seq Expression	Csor.00g282080
Synteny	Csor.00g282080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCGCACGTGCAATTCAGCCAAACGAAGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTGCGATCAATGTTCAAAAATCGGAACTATCGCCGCCGTCTACGGCTGGACCGCCACCTGTCGGACACCGCAGACTCAACCCTAGATTCGCCTCAGAAGAACAGAAAAAAGCATTCCATCTCCGGTGAGTTTAATGTTAGCGTTTTTTTTTGTCAGTCATTTTGTACGCCTTTAAGCCTTGTTTGGATGCACGAATATAATGAACGCGAATAATAGGATTAGGGTTGGAGTAGTTCTTGGTTAACGTTAAAGACGCATTATTTTCCTATATTTGGGTTTTTTTTTTTTTTTTTTTAAAAATTTTATTTTGACTCCAATGGACCAACCAACCGAACAGCCCCTAAACAACACGACTAAAGCGGGAATAGTGAATATTCCCTGTGAAGATATTTATGTGTGATTTATATATCACAATAAAAATCAATTTTCTTTTTTGTTATTTATTTATTTATTTTCTTTTTAATGACTTACGGCTATGATCCAGTAGGTACCAGAATGGACGGTAGATCTAGCAGGAGATCAAGACGGATACCATCTCTACCGCACACTTCAATTCAAGATCAGGTCATTATAAATATGTGCAACTCTCGTCTTTATTTCCTTTTAATCTTATCTTTTTCAATCAAAATTATGCTATTTGTTGTAATGCCACGTGGATATAAACTAATAACTTATTTAGGTTTAATTAAATTTAAATACAAAATTTTCTCAAGTATTTGATATTTTAAACAATAATATAATATTTATAGTTAAATTATTAAAATAAAATGGCATGCTTATGTGGCATGGCAGGTGGTCCCACAGATGGAAGAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTGTCAACTAA

mRNA sequence

ATGGAGTCGCACGTGCAATTCAGCCAAACGAAGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTGCGATCAATGTTCAAAAATCGGAACTATCGCCGCCGTCTACGGCTGGACCGCCACCTGTCGGACACCGCAGACTCAACCCTAGATTCGCCTCAGAAGAACAGAAAAAAGCATTCCATCTCCGTAGGTACCAGAATGGACGGTAGATCTAGCAGGAGATCAAGACGGATACCATCTCTACCGCACACTTCAATTCAAGATCAGGTGGTCCCACAGATGGAAGAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTGTCAACTAA

Coding sequence (CDS)

ATGGAGTCGCACGTGCAATTCAGCCAAACGAAGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTGCGATCAATGTTCAAAAATCGGAACTATCGCCGCCGTCTACGGCTGGACCGCCACCTGTCGGACACCGCAGACTCAACCCTAGATTCGCCTCAGAAGAACAGAAAAAAGCATTCCATCTCCGTAGGTACCAGAATGGACGGTAGATCTAGCAGGAGATCAAGACGGATACCATCTCTACCGCACACTTCAATTCAAGATCAGGTGGTCCCACAGATGGAAGAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTGTCAACTAA

Protein sequence

MESHVQFSQTKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDSPQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPVN

Homology

[Close]

BLAST of Csor.00g282080 vs. NCBI nr
Match: KAG6576732.1 (hypothetical protein SDJN03_24306, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239 bits (611), Expect = 1.41e-79
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MESHVQFSQTKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSQTKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSQTKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120
           PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

[Close]

BLAST of Csor.00g282080 vs. NCBI nr
Match: XP_022923139.1 (uncharacterized protein LOC111430892 isoform X1 [Cucurbita moschata])

HSP 1 Score: 237 bits (604), Expect = 1.64e-78
Identity = 120/122 (98.36%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MESHVQFSQTKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFS+TKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRL+LDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120
           PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

[Close]

BLAST of Csor.00g282080 vs. NCBI nr
Match: XP_022984699.1 (uncharacterized protein LOC111482903 isoform X1 [Cucurbita maxima])

HSP 1 Score: 235 bits (600), Expect = 6.70e-78
Identity = 119/122 (97.54%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MESHVQFSQTKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFS+TKPFWTNEKHMHFLNSMEASFVRSMFKNRN+RRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120
           PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

[Close]

BLAST of Csor.00g282080 vs. NCBI nr
Match: KAG7014778.1 (hypothetical protein SDJN02_22407 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 232 bits (591), Expect = 1.53e-76
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MESHVQFSQTKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFS+TKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120
           PQKNRKKHSIS GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP
Sbjct: 61  PQKNRKKHSIS-GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 121

[Close]

BLAST of Csor.00g282080 vs. NCBI nr
Match: XP_023552558.1 (uncharacterized protein LOC111810184 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 232 bits (591), Expect = 1.58e-76
Identity = 118/122 (96.72%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MESHVQFSQTKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFS+TKPFWTNEKHMHFLNSMEASFVRSMFKNRN+RR LRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRLLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120
           P KNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP
Sbjct: 61  PHKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

[Close]

BLAST of Csor.00g282080 vs. ExPASy TrEMBL
Match: A0A6J1E5I2 (uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430892 PE=4 SV=1)

HSP 1 Score: 237 bits (604), Expect = 7.96e-79
Identity = 120/122 (98.36%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MESHVQFSQTKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFS+TKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRL+LDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120
           PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

[Close]

BLAST of Csor.00g282080 vs. ExPASy TrEMBL
Match: A0A6J1JBA6 (uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 235 bits (600), Expect = 3.24e-78
Identity = 119/122 (97.54%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MESHVQFSQTKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFS+TKPFWTNEKHMHFLNSMEASFVRSMFKNRN+RRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120
           PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

[Close]

BLAST of Csor.00g282080 vs. ExPASy TrEMBL
Match: A0A6J1EAV1 (uncharacterized protein LOC111430892 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430892 PE=4 SV=1)

HSP 1 Score: 230 bits (587), Expect = 3.02e-76
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MESHVQFSQTKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFS+TKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRL+LDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120
           PQKNRKKHSIS GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP
Sbjct: 61  PQKNRKKHSIS-GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 121

[Close]

BLAST of Csor.00g282080 vs. ExPASy TrEMBL
Match: A0A6J1J606 (uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 229 bits (583), Expect = 1.23e-75
Identity = 118/122 (96.72%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MESHVQFSQTKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFS+TKPFWTNEKHMHFLNSMEASFVRSMFKNRN+RRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120
           PQKNRKKHSIS GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SP
Sbjct: 61  PQKNRKKHSIS-GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 121

[Close]

BLAST of Csor.00g282080 vs. ExPASy TrEMBL
Match: A0A6J1CHV7 (uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011640 PE=4 SV=1)

HSP 1 Score: 182 bits (462), Expect = 8.48e-57
Identity = 96/123 (78.05%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 1   MESHVQFSQTKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRR-LRLDRHLSDTADSTLD 60
           MESHVQF++T   WTNEKHMHFLNSMEASFVRSMF+NR +RRR LRLDRHL DT+DSTLD
Sbjct: 27  MESHVQFNETGSCWTNEKHMHFLNSMEASFVRSMFENRTHRRRRLRLDRHLPDTSDSTLD 86

Query: 61  SPQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMS 120
           SPQK+RK H+ S    +DGRSS RSR   SLPHTS QDQVVPQME+RAVEDEDERDHPMS
Sbjct: 87  SPQKDRKNHATSGAATIDGRSSSRSRTRSSLPHTSNQDQVVPQMEKRAVEDEDERDHPMS 146

Query: 121 PVN 122
           P+N
Sbjct: 147 PIN 149

The following BLAST results are available for this feature:

BLAST of Csor.00g282080 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g282080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576732.1	1.41e-79	100.00	hypothetical protein SDJN03_24306, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923139.1	1.64e-78	98.36	uncharacterized protein LOC111430892 isoform X1 [Cucurbita moschata]	[more]
XP_022984699.1	6.70e-78	97.54	uncharacterized protein LOC111482903 isoform X1 [Cucurbita maxima]	[more]
KAG7014778.1	1.53e-76	98.36	hypothetical protein SDJN02_22407 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023552558.1	1.58e-76	96.72	uncharacterized protein LOC111810184 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g282080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5I2	7.96e-79	98.36	uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JBA6	3.24e-78	97.54	uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EAV1	3.02e-76	97.54	uncharacterized protein LOC111430892 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J606	1.23e-75	96.72	uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1CHV7	8.48e-57	78.05	uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of Csor.00g282080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..122
None	No IPR available	PANTHER	PTHR33676:SF15	SUBFAMILY NOT NAMED	coord: 1..116
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g282080.m01	Csor.00g282080.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold