Csor.00g281910 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g281910
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionTraB domain-containing protein
LocationCsor_Chr16: 670102 .. 670835 (-)
RNA-Seq ExpressionCsor.00g281910
SyntenyCsor.00g281910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAGGGGTTACAGAGACAGCATGGCAAAGGGGTTACAGAGGCTGACAAAAGAACACCTTCGAGTGACGTGGCGGAAAACTCCAAATCAGCACACGGTTTTTTAAATTGACAGTTAATGAAAGAAAACCGAATTTCCGATACCGATACGGTAACTGACTGTGACTGAGAGTGGGTGACAGAATAGGGATTAGTACGACTGGTTATTTTGCCGCGGAAACGCGTCAACCAACCACGTGTCTGTTATGTAGGTGACAGACGAGGTCCACTACACTTGAACCCATACCCTCCCTCCCACTTGTTCCTTTTTTTCTTTTTCTTTTTATGCAACACATCATTTTGTAATAATTTATCTGTTTAATTTGATTGCGACATTTAACTTTATTTTTAAATTATCTCTATTATTATTATTATTATTATATAGTGAAAATGAAATTTGTAATCCAAATCATATCCACTTTTGATGATCGAGTCATGATTCATACAAAACCAAAGAAGAGTTGTAAATGAAATTTCTTTTTGATTTACGATCCGAGATCTCTCGGGATTCTAGAGCCACCATTGCTGAAGTTCACGTTCGATTTGGCTGACGATGGCACGTTGGTTTCGGTTCACAAGACGAGATTTTGGTCCTATCCCGGACTGGAGCCCGATGCAATATGGCTCGACAGAACTTCGCATATTTTCCCCAATGATGGTGTGGTCGAGCTTCGCAGGAGCAGGCAAGTTTGA

mRNA sequence

ATGGCAAAGGGGTTACAGAGACAGCATGGCAAAGGGGTTACAGAGGCTGACAAAAGAACACCTTCGAGTGACGTGGCGGAAAACTCCAAATCAGCACACGAGCCACCATTGCTGAAGTTCACGTTCGATTTGGCTGACGATGGCACGTTGGTTTCGGTTCACAAGACGAGATTTTGGTCCTATCCCGGACTGGAGCCCGATGCAATATGGCTCGACAGAACTTCGCATATTTTCCCCAATGATGGTGTGGTCGAGCTTCGCAGGAGCAGGCAAGTTTGA

Coding sequence (CDS)

ATGGCAAAGGGGTTACAGAGACAGCATGGCAAAGGGGTTACAGAGGCTGACAAAAGAACACCTTCGAGTGACGTGGCGGAAAACTCCAAATCAGCACACGAGCCACCATTGCTGAAGTTCACGTTCGATTTGGCTGACGATGGCACGTTGGTTTCGGTTCACAAGACGAGATTTTGGTCCTATCCCGGACTGGAGCCCGATGCAATATGGCTCGACAGAACTTCGCATATTTTCCCCAATGATGGTGTGGTCGAGCTTCGCAGGAGCAGGCAAGTTTGA

Protein sequence

MAKGLQRQHGKGVTEADKRTPSSDVAENSKSAHEPPLLKFTFDLADDGTLVSVHKTRFWSYPGLEPDAIWLDRTSHIFPNDGVVELRRSRQV
Homology
BLAST of Csor.00g281910 vs. NCBI nr
Match: KAG6576748.1 (hypothetical protein SDJN03_24322, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192 bits (489), Expect = 6.36e-62
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1  MAKGLQRQHGKGVTEADKRTPSSDVAENSKSAHEPPLLKFTFDLADDGTLVSVHKTRFWS 60
          MAKGLQRQHGKGVTEADKRTPSSDVAENSKSAHEPPLLKFTFDLADDGTLVSVHKTRFWS
Sbjct: 1  MAKGLQRQHGKGVTEADKRTPSSDVAENSKSAHEPPLLKFTFDLADDGTLVSVHKTRFWS 60

Query: 61 YPGLEPDAIWLDRTSHIFPNDGVVELRRSRQV 92
          YPGLEPDAIWLDRTSHIFPNDGVVELRRSRQV
Sbjct: 61 YPGLEPDAIWLDRTSHIFPNDGVVELRRSRQV 92

BLAST of Csor.00g281910 vs. NCBI nr
Match: KAA0033611.1 (traB domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 2.48e-06
Identity = 40/93 (43.01%), Postives = 50/93 (53.76%), Query Frame = 0

Query: 23  SDVAENSKSA---HEPPLLKFTFDLADDGTLVSVHKTRF-----WSYPGLEPDAIWLDRT 82
           S+++E+S++A     P LL    DLADDG LV V KT+F     W    +EP AIWL  T
Sbjct: 42  SEISEDSRAAIAETHPELL----DLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGT 101

Query: 83  SHIF---------------PNDGVVELRRSRQV 92
           SHI                P++ VVEL RSRQV
Sbjct: 102 SHISSKSVKDVERVVRAVKPDNVVVELCRSRQV 130

BLAST of Csor.00g281910 vs. NCBI nr
Match: TYK22277.1 (traB domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 9.72e-06
Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 0

Query: 23  SDVAENSKSA---HEPPLLKFTFDLADDGTLVSVHKTRF-----WSYPGLEPDAIWLDRT 82
           S+++++S++A     P LL    DLADDG LV V KT+F     W    +EP AIWL  T
Sbjct: 42  SEISKDSRAAIAETHPELL----DLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGT 101

Query: 83  SHIF---------------PNDGVVELRRSRQV 92
           SHI                P++ VVEL RSRQV
Sbjct: 102 SHISSKSVKDVDRVVRAVKPDNVVVELCRSRQV 130

BLAST of Csor.00g281910 vs. NCBI nr
Match: XP_022140936.1 (traB domain-containing protein isoform X2 [Momordica charantia])

HSP 1 Score: 50.1 bits (118), Expect = 1.59e-04
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 23  SDVAENSKSA---HEPPLLKFTFDLADDGTLVSVHKTRF-----WSYPGLEPDAIWLDRT 82
           S+++++S++A     P LL    DLADDGTLV + K RF     W    +EP+AIWL  T
Sbjct: 42  SEISDDSRAAIAQSHPELL----DLADDGTLVLLEKRRFGPVPAWRAEFVEPEAIWLVGT 101

Query: 83  SHIFP---------------NDGVVELRRSR 90
           SHI P               ++ VVEL RSR
Sbjct: 102 SHISPKSVQDVQRVVRAVKPDNVVVELCRSR 128

BLAST of Csor.00g281910 vs. NCBI nr
Match: XP_022140935.1 (traB domain-containing protein isoform X1 [Momordica charantia])

HSP 1 Score: 50.1 bits (118), Expect = 1.59e-04
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 23  SDVAENSKSA---HEPPLLKFTFDLADDGTLVSVHKTRF-----WSYPGLEPDAIWLDRT 82
           S+++++S++A     P LL    DLADDGTLV + K RF     W    +EP+AIWL  T
Sbjct: 42  SEISDDSRAAIAQSHPELL----DLADDGTLVLLEKRRFGPVPAWRAEFVEPEAIWLVGT 101

Query: 83  SHIFP---------------NDGVVELRRSR 90
           SHI P               ++ VVEL RSR
Sbjct: 102 SHISPKSVQDVQRVVRAVKPDNVVVELCRSR 128

BLAST of Csor.00g281910 vs. ExPASy TrEMBL
Match: A0A5A7SW10 (TraB domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00470 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.20e-06
Identity = 40/93 (43.01%), Postives = 50/93 (53.76%), Query Frame = 0

Query: 23  SDVAENSKSA---HEPPLLKFTFDLADDGTLVSVHKTRF-----WSYPGLEPDAIWLDRT 82
           S+++E+S++A     P LL    DLADDG LV V KT+F     W    +EP AIWL  T
Sbjct: 42  SEISEDSRAAIAETHPELL----DLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGT 101

Query: 83  SHIF---------------PNDGVVELRRSRQV 92
           SHI                P++ VVEL RSRQV
Sbjct: 102 SHISSKSVKDVERVVRAVKPDNVVVELCRSRQV 130

BLAST of Csor.00g281910 vs. ExPASy TrEMBL
Match: A0A5D3DF16 (TraB domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold440G00330 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.71e-06
Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 0

Query: 23  SDVAENSKSA---HEPPLLKFTFDLADDGTLVSVHKTRF-----WSYPGLEPDAIWLDRT 82
           S+++++S++A     P LL    DLADDG LV V KT+F     W    +EP AIWL  T
Sbjct: 42  SEISKDSRAAIAETHPELL----DLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGT 101

Query: 83  SHIF---------------PNDGVVELRRSRQV 92
           SHI                P++ VVEL RSRQV
Sbjct: 102 SHISSKSVKDVDRVVRAVKPDNVVVELCRSRQV 130

BLAST of Csor.00g281910 vs. ExPASy TrEMBL
Match: A0A0A0L8K8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180270 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.12e-05
Identity = 33/70 (47.14%), Postives = 37/70 (52.86%), Query Frame = 0

Query: 43  DLADDGTLVSVHKTRF-----WSYPGLEPDAIWLDRTSHIFP---------------NDG 92
           DLADDG LV V KT+F     W    +EP AIWL  TSHI P               ++ 
Sbjct: 61  DLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGTSHISPKSVKDVERVVRAVKPDNV 120

BLAST of Csor.00g281910 vs. ExPASy TrEMBL
Match: A0A6J1CHI0 (traB domain-containing protein isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011476 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 7.68e-05
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 23  SDVAENSKSA---HEPPLLKFTFDLADDGTLVSVHKTRF-----WSYPGLEPDAIWLDRT 82
           S+++++S++A     P LL    DLADDGTLV + K RF     W    +EP+AIWL  T
Sbjct: 42  SEISDDSRAAIAQSHPELL----DLADDGTLVLLEKRRFGPVPAWRAEFVEPEAIWLVGT 101

Query: 83  SHIFP---------------NDGVVELRRSR 90
           SHI P               ++ VVEL RSR
Sbjct: 102 SHISPKSVQDVQRVVRAVKPDNVVVELCRSR 128

BLAST of Csor.00g281910 vs. ExPASy TrEMBL
Match: A0A6J1CGK3 (traB domain-containing protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011476 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 7.69e-05
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 23  SDVAENSKSA---HEPPLLKFTFDLADDGTLVSVHKTRF-----WSYPGLEPDAIWLDRT 82
           S+++++S++A     P LL    DLADDGTLV + K RF     W    +EP+AIWL  T
Sbjct: 42  SEISDDSRAAIAQSHPELL----DLADDGTLVLLEKRRFGPVPAWRAEFVEPEAIWLVGT 101

Query: 83  SHIFP---------------NDGVVELRRSR 90
           SHI P               ++ VVEL RSR
Sbjct: 102 SHISPKSVQDVQRVVRAVKPDNVVVELCRSR 128

BLAST of Csor.00g281910 vs. TAIR 10
Match: AT5G52030.2 (TraB family protein )

HSP 1 Score: 47.4 bits (111), Expect = 7.3e-06
Identity = 31/78 (39.74%), Postives = 41/78 (52.56%), Query Frame = 0

Query: 23  SDVAENSKSA---HEPPLLKFTFDLADDGTLVSVHKTRF-----WSYPGLEPDAIWLDRT 82
           +D+A  S++A     P LL    DLAD+GTL+ + K  F     W    +EP+AIWL  T
Sbjct: 44  NDIASESRAAIAKTYPELL----DLADNGTLILLQKQSFGPVPAWRKEFVEPEAIWLVGT 103

Query: 83  SHIFPNDGVVELRRSRQV 93
           SHI P    +  R  R V
Sbjct: 104 SHISPESASIVERVVRTV 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6576748.16.36e-62100.00hypothetical protein SDJN03_24322, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0033611.12.48e-0643.01traB domain-containing protein [Cucumis melo var. makuwa][more]
TYK22277.19.72e-0641.94traB domain-containing protein [Cucumis melo var. makuwa][more]
XP_022140936.11.59e-0440.66traB domain-containing protein isoform X2 [Momordica charantia][more]
XP_022140935.11.59e-0440.66traB domain-containing protein isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A5A7SW101.20e-0643.01TraB domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3DF164.71e-0641.94TraB domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0L8K85.12e-0547.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180270 PE=4 SV=1[more]
A0A6J1CHI07.68e-0540.66traB domain-containing protein isoform X2 OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A6J1CGK37.69e-0540.66traB domain-containing protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC1... [more]
Match NameE-valueIdentityDescription
AT5G52030.27.3e-0639.74TraB family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g281910.m01Csor.00g281910.m01mRNA