Csor.00g281910 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAAGGGGTTACAGAGACAGCATGGCAAAGGGGTTACAGAGGCTGACAAAAGAACACCTTCGAGTGACGTGGCGGAAAACTCCAAATCAGCACACGGTTTTTTAAATTGACAGTTAATGAAAGAAAACCGAATTTCCGATACCGATACGGTAACTGACTGTGACTGAGAGTGGGTGACAGAATAGGGATTAGTACGACTGGTTATTTTGCCGCGGAAACGCGTCAACCAACCACGTGTCTGTTATGTAGGTGACAGACGAGGTCCACTACACTTGAACCCATACCCTCCCTCCCACTTGTTCCTTTTTTTCTTTTTCTTTTTATGCAACACATCATTTTGTAATAATTTATCTGTTTAATTTGATTGCGACATTTAACTTTATTTTTAAATTATCTCTATTATTATTATTATTATTATATAGTGAAAATGAAATTTGTAATCCAAATCATATCCACTTTTGATGATCGAGTCATGATTCATACAAAACCAAAGAAGAGTTGTAAATGAAATTTCTTTTTGATTTACGATCCGAGATCTCTCGGGATTCTAGAGCCACCATTGCTGAAGTTCACGTTCGATTTGGCTGACGATGGCACGTTGGTTTCGGTTCACAAGACGAGATTTTGGTCCTATCCCGGACTGGAGCCCGATGCAATATGGCTCGACAGAACTTCGCATATTTTCCCCAATGATGGTGTGGTCGAGCTTCGCAGGAGCAGGCAAGTTTGA ATGGCAAAGGGGTTACAGAGACAGCATGGCAAAGGGGTTACAGAGGCTGACAAAAGAACACCTTCGAGTGACGTGGCGGAAAACTCCAAATCAGCACACGAGCCACCATTGCTGAAGTTCACGTTCGATTTGGCTGACGATGGCACGTTGGTTTCGGTTCACAAGACGAGATTTTGGTCCTATCCCGGACTGGAGCCCGATGCAATATGGCTCGACAGAACTTCGCATATTTTCCCCAATGATGGTGTGGTCGAGCTTCGCAGGAGCAGGCAAGTTTGA ATGGCAAAGGGGTTACAGAGACAGCATGGCAAAGGGGTTACAGAGGCTGACAAAAGAACACCTTCGAGTGACGTGGCGGAAAACTCCAAATCAGCACACGAGCCACCATTGCTGAAGTTCACGTTCGATTTGGCTGACGATGGCACGTTGGTTTCGGTTCACAAGACGAGATTTTGGTCCTATCCCGGACTGGAGCCCGATGCAATATGGCTCGACAGAACTTCGCATATTTTCCCCAATGATGGTGTGGTCGAGCTTCGCAGGAGCAGGCAAGTTTGA MAKGLQRQHGKGVTEADKRTPSSDVAENSKSAHEPPLLKFTFDLADDGTLVSVHKTRFWSYPGLEPDAIWLDRTSHIFPNDGVVELRRSRQV Homology
BLAST of Csor.00g281910 vs. NCBI nr
Match: KAG6576748.1 (hypothetical protein SDJN03_24322, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 192 bits (489), Expect = 6.36e-62 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
BLAST of Csor.00g281910 vs. NCBI nr
Match: KAA0033611.1 (traB domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 53.1 bits (126), Expect = 2.48e-06 Identity = 40/93 (43.01%), Postives = 50/93 (53.76%), Query Frame = 0
BLAST of Csor.00g281910 vs. NCBI nr
Match: TYK22277.1 (traB domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 51.6 bits (122), Expect = 9.72e-06 Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 0
BLAST of Csor.00g281910 vs. NCBI nr
Match: XP_022140936.1 (traB domain-containing protein isoform X2 [Momordica charantia]) HSP 1 Score: 50.1 bits (118), Expect = 1.59e-04 Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 0
BLAST of Csor.00g281910 vs. NCBI nr
Match: XP_022140935.1 (traB domain-containing protein isoform X1 [Momordica charantia]) HSP 1 Score: 50.1 bits (118), Expect = 1.59e-04 Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 0
BLAST of Csor.00g281910 vs. ExPASy TrEMBL
Match: A0A5A7SW10 (TraB domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00470 PE=4 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 1.20e-06 Identity = 40/93 (43.01%), Postives = 50/93 (53.76%), Query Frame = 0
BLAST of Csor.00g281910 vs. ExPASy TrEMBL
Match: A0A5D3DF16 (TraB domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold440G00330 PE=4 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 4.71e-06 Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 0
BLAST of Csor.00g281910 vs. ExPASy TrEMBL
Match: A0A0A0L8K8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180270 PE=4 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 5.12e-05 Identity = 33/70 (47.14%), Postives = 37/70 (52.86%), Query Frame = 0
BLAST of Csor.00g281910 vs. ExPASy TrEMBL
Match: A0A6J1CHI0 (traB domain-containing protein isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011476 PE=4 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 7.68e-05 Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 0
BLAST of Csor.00g281910 vs. ExPASy TrEMBL
Match: A0A6J1CGK3 (traB domain-containing protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011476 PE=4 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 7.69e-05 Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 0
BLAST of Csor.00g281910 vs. TAIR 10
Match: AT5G52030.2 (TraB family protein ) HSP 1 Score: 47.4 bits (111), Expect = 7.3e-06 Identity = 31/78 (39.74%), Postives = 41/78 (52.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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