Csor.00g281510 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g281510
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr11: 13448786 .. 13451439 (+)
RNA-Seq ExpressionCsor.00g281510
SyntenyCsor.00g281510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAATGGAATCGAGTCTGAAGAGGCTGCCAAGGCTTTCTATAACTGTATGCTCGACGGTTGGGTTTTAGTACTCGTGTCAGCTCCTCCCGTCGATCTAGGCGTGATGAGCGATATACAGAGGCAATTTGTTTGTGCCAAGAGGTTAGGAATCTGAATGAGAAGCGAACTAAAGGGGACCGAGAAATTAAGCGGTCCTCGAACCGTTCCAAAGAGTCGTTGAAAGCTCTTATCTGTGAAGATGCATGATTATGGGAAATGGGTTGTGCTTGTTTGTTAGAGAGCATAACCATGAGTTAGTTCATCCTGATCAGGTGCACTGCATAAGGTCTCATAGGCAAATATCAGGCCAGCAAAGACCTTGATTGATACTGTACAGGGTCTTCTGGATGGACCTCGCAGGATATGTCTGACTCAAAAGGGGGAAAAAAGGGGTTTTTTTATGGTGGAAATCAGTAAAGTTGAGGATTTACGAGAGCGTTCGAGATGTCGGAAATCTATATGAGAGAATAACCGCCAAAGGAGCCCCTTAGAAGGCGAACATGTCCAACTGACCTGTCTCGGCCATTACTTAAGACAGCATGCATTATGAATAATCCTAATCTTCTTCTACTGCCGGTGCTACAGGATCAGAGGAGGATCAATGGATGTAGGAAATGAGTCCTTTTGCGGCTACGCCAGCCAAAGGCTCAGATGAACAATTATAATTACTTTGCCGCGGTATACTGCTTACTATTCGACACTGACCTAAAGATCACCAATAAGATATACAGTCTAGCCCCTTCGCTCCTTTCACCGGATGTCCGTGAATCCACCATGGACCAGCCAGTGTTGTTTCCCTGGTATGTGCTAAATTTCCACTAAATAAAATGCAATATCCAAGCAATCGTTTAATTATGCTATTTAGAACGCTGGCTTCTTCTTTTTTTAAGCAATGTATACCTGGTCACCCACCTATGTCGGATTACTACGCTCCGATAATGATGCAGTTAATACAAGACAGCCACGTCGCCACATAGTCATCTTACCCGAGACCCGTCACCTGTCTTTAGCCAAATGGCATATTTTCAAGAAATGACACAGGAGATGATATCCACAGCGTACGTTCCTTAAACATCCAAGCTGTTGAAAGCTTGATTCCATAAGCTGACTGCTAAACTTGACTAACGAATCAATTGAGCCGAATTTGAGTCTTCTGCCCTGGTTACAGCTCACTCCAGTCTTGACAAAGATTATGATCTCAGGGATCACGAGTGGCCTTCAGACGGCTATTAACTCAGGCCTCGCGAAGGCCAGTAGCGGTCTGCCTGGTCTCGTATTTAGAGGAACACTTTTTTATGACATAGAAATGATCTTAATTACACAACGATCAGTGGGGGCGATAGCATGAATTCATATTCTTGATGGAGATTGTGAAATGAACTTCAACCAATATTGAGGTCAGCATTCTTCAAAACTGCCTATTGAAAAAGCTCTCTGAGAGTCGAAAATGAGAAAGAAGTAACAAGCAGATTTATGATACAATCAATGAACACTCAGCCCCTGCTATCTAAAAAGACTACATCACCAATGGAAAACAAGGTTTACTGAAGACTTTACACAGGAAAGCTGTTTTCACGCGTTCCAAGACGAGTTAGGTGTGGCACGTTAACTTTCATGGCCTCGAAGGCCGATGATAACGGGGAAGTTATAACCTTATCAAAGTGGCCAAATTTGGAGAGGATCATAAATGCCCCTCAATCACTATGAAGAAAATTTAATGTTGTGGAGATGAGGGCAAATTACGTAGTTGCCAGATGTTTTGAGTTTTCAGGCCTTTTTGTGCAGACATATCAACTTGGCTGTCTTCAGAGGTGACCAATGTGCCTTACTCTTCCATCTCAATTACATATTGAAACGCCTCATACAGGCAAGAGAAACGAGAAACGCGAGAGTAACGTGATATTGGAGGACCCATGTGAATGGATATCTATAACAACTATCTCGAATCTCATACGGTGAGATATATTACCCTACGCCACAAGGCTTTTAATTCATCAGAGGCAAGGAGCAAAGAACTATCAATACATATAACGTGGCAAAGGATAGCCCTTCAGGAGGCTGGGCGAGGGACGTAAAAAAAAAGGTTTCTTTCTGCATACGCCAAGGAATAACAGTAAAATTTACTTGCGATCGATGAGGCGAATTAAAGCGGACCCATGCACAATGATATAAGCTATACTAATCATAGTAGTAGCACAGGATCAAGACGGTGCAGCTTGGGAATAAACATGTCCGAACGCCCGTACGAGTTCGCTTTCTTTGTATCTCTCGGTCTCCAACTTCTTCTCACTTTTTTATAATGTCGATTGCATTACTCAAGATTCTAGATAAGAAAAAAGGTGGATTTCGACATCCTTTTAGTGTTTTGAAGATTTAAGCATTGGATTTCGACATGACCGTGGCTGGACAATCCCTTCATTCACTTCACTGCATGATTGTCGTCTTACTTTTTTTCTACATTTCTCGAATATTTTAAGGCAGGACGATTTGGACAAGAAAATCAATGAACTGTCGAACGAGGTTGGAGGTGTGCAAATCGGAAGTGTGAAGTGTATCGACTCGAACCTTTTTTCCGTGCTGAAAGATATTGAGGATTTGATCACAAGTTGA

mRNA sequence

ATGAAGAATGGAATCGAGTCTGAAGAGGCTGCCAAGGCTTTCTATAACTGTATGCTCGACGGTTGGGTTTTAGTACTCGTGTCAGCTCCTCCCGTCGATCTAGGCGTGATGAGCGATATACAGAGGCAATTTGTTTGTGCCAAGAGATGCATGATTATGGGAAATGGGTTGTGCTTGTTTGTTAGAGAGCATAACCATGAGTTAGTTCATCCTGATCAGCTCACTCCAGTCTTGACAAAGATTATGATCTCAGGGATCACGAGTGGCCTTCAGACGGCTATTAACTCAGGCCTCGCGAAGGCCAGTAGCGGTCTGCCTGGTCTCGACGATTTGGACAAGAAAATCAATGAACTGTCGAACGAGGTTGGAGGTGTGCAAATCGGAAGTGTGAAGTGTATCGACTCGAACCTTTTTTCCGTGCTGAAAGATATTGAGGATTTGATCACAAGTTGA

Coding sequence (CDS)

ATGAAGAATGGAATCGAGTCTGAAGAGGCTGCCAAGGCTTTCTATAACTGTATGCTCGACGGTTGGGTTTTAGTACTCGTGTCAGCTCCTCCCGTCGATCTAGGCGTGATGAGCGATATACAGAGGCAATTTGTTTGTGCCAAGAGATGCATGATTATGGGAAATGGGTTGTGCTTGTTTGTTAGAGAGCATAACCATGAGTTAGTTCATCCTGATCAGCTCACTCCAGTCTTGACAAAGATTATGATCTCAGGGATCACGAGTGGCCTTCAGACGGCTATTAACTCAGGCCTCGCGAAGGCCAGTAGCGGTCTGCCTGGTCTCGACGATTTGGACAAGAAAATCAATGAACTGTCGAACGAGGTTGGAGGTGTGCAAATCGGAAGTGTGAAGTGTATCGACTCGAACCTTTTTTCCGTGCTGAAAGATATTGAGGATTTGATCACAAGTTGA

Protein sequence

MKNGIESEEAAKAFYNCMLDGWVLVLVSAPPVDLGVMSDIQRQFVCAKRCMIMGNGLCLFVREHNHELVHPDQLTPVLTKIMISGITSGLQTAINSGLAKASSGLPGLDDLDKKINELSNEVGGVQIGSVKCIDSNLFSVLKDIEDLITS
Homology
[Close]
BLAST of Csor.00g281510 vs. NCBI nr
Match: KAG6589069.1 (hypothetical protein SDJN03_17634, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 303 bits (776), Expect = 7.77e-104
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MKNGIESEEAAKAFYNCMLDGWVLVLVSAPPVDLGVMSDIQRQFVCAKRCMIMGNGLCLF 60
           MKNGIESEEAAKAFYNCMLDGWVLVLVSAPPVDLGVMSDIQRQFVCAKRCMIMGNGLCLF
Sbjct: 1   MKNGIESEEAAKAFYNCMLDGWVLVLVSAPPVDLGVMSDIQRQFVCAKRCMIMGNGLCLF 60

Query: 61  VREHNHELVHPDQLTPVLTKIMISGITSGLQTAINSGLAKASSGLPGLDDLDKKINELSN 120
           VREHNHELVHPDQLTPVLTKIMISGITSGLQTAINSGLAKASSGLPGLDDLDKKINELSN
Sbjct: 61  VREHNHELVHPDQLTPVLTKIMISGITSGLQTAINSGLAKASSGLPGLDDLDKKINELSN 120

Query: 121 EVGGVQIGSVKCIDSNLFSVLKDIEDLITS 150
           EVGGVQIGSVKCIDSNLFSVLKDIEDLITS
Sbjct: 121 EVGGVQIGSVKCIDSNLFSVLKDIEDLITS 150

[Close]
BLAST of Csor.00g281510 vs. NCBI nr
Match: PQQ11653.1 (protein FAR1-RELATED SEQUENCE 5 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 53.1 bits (126), Expect = 6.96e-05
Identity = 67/221 (30.32%), Postives = 85/221 (38.46%), Query Frame = 0 

Query: 6   ESEEAAKAFYNCMLDG-WVLVLVSAPPVDLGVMSDIQRQFVCAKR--------------- 65
           ESEEAAKAFYN           VS+        + IQRQFVCAK                
Sbjct: 82  ESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREI 141

Query: 66  ----------------CMIMGNGLCL---FVREHNHELVHPDQLTPV------------- 125
                             +  +G  +   FV+EHNHELV PDQ+  +             
Sbjct: 142 KRPRTITRVGCKASLSVKMQDSGKWVVSGFVKEHNHELVPPDQVHCLRSHRQISDGAKSS 201

Query: 126 ------------LTKIMISGITSGLQTAIN-----------------SGLAKASSGLP-G 146
                        TK +     +  +T +N                 SG  + SSG    
Sbjct: 202 ETYDIALDALKEATKKVAHATKNDGKTMVNGHVRGNLAGGAGRIHYASGDHEGSSGQHLS 261

[Close]
BLAST of Csor.00g281510 vs. NCBI nr
Match: XP_012837945.1 (PREDICTED: LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5-like [Erythranthe guttata])

HSP 1 Score: 51.6 bits (122), Expect = 2.94e-04
Identity = 37/86 (43.02%), Postives = 46/86 (53.49%), Query Frame = 0 

Query: 6   ESEEAAKAFYNCMLDG-WVLVLVSAPPVDLGVMSDIQRQFVCAK-----RCMIMGNGLCL 65
           ESEE+AKAFYN           VS+        + IQR FVCAK     + ++ G     
Sbjct: 76  ESEESAKAFYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGDSGKWVVSG----- 135

Query: 66  FVREHNHELVHPDQLTPVLTKIMISG 85
           FVREHNHELV PDQ+  + +   ISG
Sbjct: 136 FVREHNHELVPPDQVHCLRSHRQISG 156

[Close]
BLAST of Csor.00g281510 vs. ExPASy TrEMBL
Match: A0A314YYQ3 (Protein FAR1-RELATED SEQUENCE OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_03607 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.37e-05
Identity = 67/221 (30.32%), Postives = 85/221 (38.46%), Query Frame = 0 

Query: 6   ESEEAAKAFYNCMLDG-WVLVLVSAPPVDLGVMSDIQRQFVCAKR--------------- 65
           ESEEAAKAFYN           VS+        + IQRQFVCAK                
Sbjct: 82  ESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREI 141

Query: 66  ----------------CMIMGNGLCL---FVREHNHELVHPDQLTPV------------- 125
                             +  +G  +   FV+EHNHELV PDQ+  +             
Sbjct: 142 KRPRTITRVGCKASLSVKMQDSGKWVVSGFVKEHNHELVPPDQVHCLRSHRQISDGAKSS 201

Query: 126 ------------LTKIMISGITSGLQTAIN-----------------SGLAKASSGLP-G 146
                        TK +     +  +T +N                 SG  + SSG    
Sbjct: 202 ETYDIALDALKEATKKVAHATKNDGKTMVNGHVRGNLAGGAGRIHYASGDHEGSSGQHLS 261

The following BLAST results are available for this feature:
BLAST of Csor.00g281510 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g281510 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589069.17.77e-104100.00hypothetical protein SDJN03_17634, partial [Cucurbita argyrosperma subsp. sorori... [more]
PQQ11653.16.96e-0530.32protein FAR1-RELATED SEQUENCE 5 [Prunus yedoensis var. nudiflora][more]
XP_012837945.12.94e-0443.02PREDICTED: LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5-like [Erythranth... [more]
BLAST of Csor.00g281510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A314YYQ33.37e-0530.32Protein FAR1-RELATED SEQUENCE OS=Prunus yedoensis var. nudiflora OX=2094558 GN=P... [more]
BLAST of Csor.00g281510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g281510.m01Csor.00g281510.m01mRNA