Csor.00g280560 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g280560
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	photosystem II repair protein PSB27-H1, chloroplastic-like
Location	Csor_Chr19: 10653390 .. 10653911 (+)
RNA-Seq Expression	Csor.00g280560
Synteny	Csor.00g280560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCCGACACTGATAACCCCATCTACTTCCAAATCTCAGCCTCTCATCATCCCTCTCAAACCCAAATCCTCCATTACCGCCGCTGCAACAACCACCACCACCCACCATTACTCCCGCCGCCGCGAGTTCCTGTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTGGGTTCTGTTCCCTCCAGCTCCGGCACTAGCGTCGTCTGACGAGGAGTACGTGAAGGACACAACCGAGGTGATAGGAAAGGTGAGAACGACGATCACCATGGATAAAAACGACCCGAATGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCCAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGTCGCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTTTCCGGACATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCCAAGAGGAAGGCCAGAATCTTGGAAGAGATGGCCACCGCCGAGAAGGCTCTGTTAAGAGGGAGATGA

mRNA sequence

ATGGCTTCCCCGACACTGATAACCCCATCTACTTCCAAATCTCAGCCTCTCATCATCCCTCTCAAACCCAAATCCTCCATTACCGCCGCTGCAACAACCACCACCACCCACCATTACTCCCGCCGCCGCGAGTTCCTGTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTGGGTTCTGTTCCCTCCAGCTCCGGCACTAGCGTCGTCTGACGAGGAGTACGTGAAGGACACAACCGAGGTGATAGGAAAGGTGAGAACGACGATCACCATGGATAAAAACGACCCGAATGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCCAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGTCGCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTTTCCGGACATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCCAAGAGGAAGGCCAGAATCTTGGAAGAGATGGCCACCGCCGAGAAGGCTCTGTTAAGAGGGAGATGA

Coding sequence (CDS)

ATGGCTTCCCCGACACTGATAACCCCATCTACTTCCAAATCTCAGCCTCTCATCATCCCTCTCAAACCCAAATCCTCCATTACCGCCGCTGCAACAACCACCACCACCCACCATTACTCCCGCCGCCGCGAGTTCCTGTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTGGGTTCTGTTCCCTCCAGCTCCGGCACTAGCGTCGTCTGACGAGGAGTACGTGAAGGACACAACCGAGGTGATAGGAAAGGTGAGAACGACGATCACCATGGATAAAAACGACCCGAATGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCCAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGTCGCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTTTCCGGACATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCCAAGAGGAAGGCCAGAATCTTGGAAGAGATGGCCACCGCCGAGAAGGCTCTGTTAAGAGGGAGATGA

Protein sequence

MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR

Homology

[Close]

BLAST of Csor.00g280560 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.9e-48
Identity = 110/174 (63.22%), Postives = 132/174 (75.86%), Query Frame = 0


Query: 2   ASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSL--TASVLAPSWVL 61
           A+ TL+ P+    +P II     SS++        +H   RR+FLSL  T+++L  S   
Sbjct: 6   ATATLLKPNLPPHKPTII----ASSVSPPLPPPRRNHL-LRRDFLSLAATSTLLTQSIQF 65

Query: 62  FPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEK 121
             PAP  A+ DEEY+KDT+ VI KVR+T++M K DPNVA AVAELRE+SNSWVAKYRKEK
Sbjct: 66  LAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEK 125

Query: 122 SLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 174
           +LLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM TAEKAL RGR
Sbjct: 126 ALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]

BLAST of Csor.00g280560 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04
Identity = 30/115 (26.09%), Postives = 61/115 (53.04%), Query Frame = 0


Query: 59  LFPPAPALASSDE---EYVKDTTEVIGKVRTTITMD-KNDPNVAAAVAELRESSNSWVAK 118
           LF P     S  E    Y+K   EV+  +R ++  + K++     +    +ES   +++ 
Sbjct: 85  LFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSN 144

Query: 119 YRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKAL 170
           +R +K++ G  S+ ++ + + A++  Y   GP+AP+P + K  IL+++  AE+ L
Sbjct: 145 WRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

[Close]

BLAST of Csor.00g280560 vs. NCBI nr
Match: KAG6572353.1 (Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011964.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 328 bits (842), Expect = 3.81e-113
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60
           MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS
Sbjct: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173

[Close]

BLAST of Csor.00g280560 vs. NCBI nr
Match: XP_023554625.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328 bits (841), Expect = 5.41e-113
Identity = 172/173 (99.42%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60
           MASPTLITPSTSKSQPLI+PLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF
Sbjct: 1   MASPTLITPSTSKSQPLIVPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS
Sbjct: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173

[Close]

BLAST of Csor.00g280560 vs. NCBI nr
Match: XP_022952622.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] >XP_022969270.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 321 bits (822), Expect = 4.12e-110
Identity = 171/173 (98.84%), Postives = 172/173 (99.42%), Query Frame = 0


Query: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60
           MASPTLITPSTSKSQPLIIPLKPKSSI+AAATTTT HHYSRRREFLSLTASVLAPSWVLF
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTT-HHYSRRREFLSLTASVLAPSWVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS
Sbjct: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of Csor.00g280560 vs. NCBI nr
Match: XP_038887363.1 (photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida])

HSP 1 Score: 279 bits (714), Expect = 1.08e-93
Identity = 151/173 (87.28%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60
           MASPTLITP TSKSQ   IPLKPKS+I+AAAT TT     RRR+FLSLTASVLAPSWVLF
Sbjct: 1   MASPTLITPCTSKSQTPFIPLKPKSTISAAATATTV----RRRDFLSLTASVLAPSWVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           P +PALASSD+EYVKDT+EVIGKVR TITMD+NDPNVAAAVAELRESSN WVAKYRKEK+
Sbjct: 61  PQSPALASSDDEYVKDTSEVIGKVRMTITMDRNDPNVAAAVAELRESSNFWVAKYRKEKA 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Csor.00g280560 vs. NCBI nr
Match: XP_004136817.1 (photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus] >KGN43600.1 hypothetical protein Csa_020553 [Cucumis sativus])

HSP 1 Score: 274 bits (701), Expect = 1.03e-91
Identity = 149/173 (86.13%), Postives = 158/173 (91.33%), Query Frame = 0


Query: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60
           MASPTLITP TSKSQ   IPLKPKS+I+AA TT T     RRREFLSLTASVLAPS+VLF
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTV----RRREFLSLTASVLAPSFVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           P +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSN WVAKYRKEK+
Sbjct: 61  PQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKA 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Csor.00g280560 vs. ExPASy TrEMBL
Match: A0A6J1HZH1 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468326 PE=3 SV=1)

HSP 1 Score: 321 bits (822), Expect = 2.00e-110
Identity = 171/173 (98.84%), Postives = 172/173 (99.42%), Query Frame = 0


Query: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60
           MASPTLITPSTSKSQPLIIPLKPKSSI+AAATTTT HHYSRRREFLSLTASVLAPSWVLF
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTT-HHYSRRREFLSLTASVLAPSWVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS
Sbjct: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of Csor.00g280560 vs. ExPASy TrEMBL
Match: A0A6J1GKW7 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455256 PE=3 SV=1)

HSP 1 Score: 321 bits (822), Expect = 2.00e-110
Identity = 171/173 (98.84%), Postives = 172/173 (99.42%), Query Frame = 0


Query: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60
           MASPTLITPSTSKSQPLIIPLKPKSSI+AAATTTT HHYSRRREFLSLTASVLAPSWVLF
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTT-HHYSRRREFLSLTASVLAPSWVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS
Sbjct: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of Csor.00g280560 vs. ExPASy TrEMBL
Match: A0A0A0K1S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 274 bits (701), Expect = 4.99e-92
Identity = 149/173 (86.13%), Postives = 158/173 (91.33%), Query Frame = 0


Query: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60
           MASPTLITP TSKSQ   IPLKPKS+I+AA TT T     RRREFLSLTASVLAPS+VLF
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTV----RRREFLSLTASVLAPSFVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           P +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSN WVAKYRKEK+
Sbjct: 61  PQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKA 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Csor.00g280560 vs. ExPASy TrEMBL
Match: A0A5A7SR30 (Photosystem II repair protein PSB27-H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003550 PE=3 SV=1)

HSP 1 Score: 274 bits (700), Expect = 7.09e-92
Identity = 148/173 (85.55%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60
           MASPTLITP TSKSQ   IPLKPKS+I+AA TT T     RRR+FLSL+ASVLAPS+VLF
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTV----RRRDFLSLSASVLAPSFVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           P +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSNSWVAKYRKEK+
Sbjct: 61  PQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKA 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Csor.00g280560 vs. ExPASy TrEMBL
Match: A0A1S3C1X2 (photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495525 PE=3 SV=1)

HSP 1 Score: 274 bits (700), Expect = 7.09e-92
Identity = 148/173 (85.55%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60
           MASPTLITP TSKSQ   IPLKPKS+I+AA TT T     RRR+FLSL+ASVLAPS+VLF
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTV----RRRDFLSLSASVLAPSFVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           P +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSNSWVAKYRKEK+
Sbjct: 61  PQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKA 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Csor.00g280560 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein )

HSP 1 Score: 193.0 bits (489), Expect = 2.0e-49
Identity = 110/174 (63.22%), Postives = 132/174 (75.86%), Query Frame = 0


Query: 2   ASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSL--TASVLAPSWVL 61
           A+ TL+ P+    +P II     SS++        +H   RR+FLSL  T+++L  S   
Sbjct: 6   ATATLLKPNLPPHKPTII----ASSVSPPLPPPRRNHL-LRRDFLSLAATSTLLTQSIQF 65

Query: 62  FPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEK 121
             PAP  A+ DEEY+KDT+ VI KVR+T++M K DPNVA AVAELRE+SNSWVAKYRKEK
Sbjct: 66  LAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEK 125

Query: 122 SLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 174
           +LLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM TAEKAL RGR
Sbjct: 126 ALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]

BLAST of Csor.00g280560 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related )

HSP 1 Score: 48.1 bits (113), Expect = 8.1e-06
Identity = 30/115 (26.09%), Postives = 61/115 (53.04%), Query Frame = 0


Query: 59  LFPPAPALASSDE---EYVKDTTEVIGKVRTTITMD-KNDPNVAAAVAELRESSNSWVAK 118
           LF P     S  E    Y+K   EV+  +R ++  + K++     +    +ES   +++ 
Sbjct: 85  LFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSN 144

Query: 119 YRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKAL 170
           +R +K++ G  S+ ++ + + A++  Y   GP+AP+P + K  IL+++  AE+ L
Sbjct: 145 WRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

The following BLAST results are available for this feature:

BLAST of Csor.00g280560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LR64	2.9e-48	63.22	Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9ZVZ9	1.1e-04	26.09	Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid...	[more]

BLAST of Csor.00g280560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572353.1	3.81e-113	100.00	Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyro...	[more]
XP_023554625.1	5.41e-113	99.42	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp...	[more]
XP_022952622.1	4.12e-110	98.84	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] ...	[more]
XP_038887363.1	1.08e-93	87.28	photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida]	[more]
XP_004136817.1	1.03e-91	86.13	photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus] >KGN4360...	[more]

BLAST of Csor.00g280560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZH1	2.00e-110	98.84	photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima O...	[more]
A0A6J1GKW7	2.00e-110	98.84	photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata...	[more]
A0A0A0K1S2	4.99e-92	86.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1	[more]
A0A5A7SR30	7.09e-92	85.55	Photosystem II repair protein PSB27-H1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3C1X2	7.09e-92	85.55	photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]

BLAST of Csor.00g280560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03600.1	2.0e-49	63.22	photosystem II family protein	[more]
AT1G05385.1	8.1e-06	26.09	photosystem II 11 kDa protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038450	Photosystem II Pbs27 superfamily	GENE3D	1.20.58.810	Photosystem II Pbs27	coord: 68..173 e-value: 1.6E-40 score: 139.8
IPR025585	Photosystem II Pbs27	PFAM	PF13326	PSII_Pbs27	coord: 39..169 e-value: 3.6E-33 score: 114.8
IPR025585	Photosystem II Pbs27	PANTHER	PTHR34041	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 1..173
IPR025585	Photosystem II Pbs27	HAMAP	MF_01481	PSII_Psb27	coord: 47..169 score: 23.928524
None	No IPR available	PANTHER	PTHR34041:SF1	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 1..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g280560.m01	Csor.00g280560.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071484	cellular response to light intensity
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010206	photosystem II repair
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009523	photosystem II