Csor.00g280230 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g280230
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr19: 10494255 .. 10495525 (+)
RNA-Seq Expression	Csor.00g280230
Synteny	Csor.00g280230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTTCCACTCCGCTTCGGCTTTCGTATTCTCAGCTCACACTTGCCTCTGGAACTGTATGTAATCGCTATCCTAAACTCTTTGATTAAGCATAGGTAGTTCGATCTTGACTATTCTGTCCTGGGTTTGAAATTTTAAGTGTACGGCCGGCTATTCCGATTTAGGGGTTTCTTGGAGAACTTCAGAGGTTAATCAAGGGATTTTTCGTTTTTATCGACACTTTCTGTATATTTCGTGGTTTCGATTACGGAGGATTAGGGCGTTTTTAGTAGGTTCATTGCTCCTATGGTTACGTGATTATTATCTTGGACTCTTCGTTTCATTCTCCGTCATCTTCTATCTGTTCTTGGTGTGAGGAGCCAAGGGACAAACCTGATATTAAAATTTATGTGTTGGCAGAAGAGAGCAGGACGATGAACTCTTATGTCAGTGAGATCTGTTCCAGTAACAGAGAGGGGAAGAACAATGCAGTTGCTCTTGATGAAGTGATTGCTTGGACAACAGAAAAGCAGTTGGTCTTGTCATTGAGGCCGGTTGGATTTTCGCATCTGCTAGGAATACTGGTATGATTCCAAGCCCAAGCCTGTGAAGTTGAATTTAAGTTTTCGGGGGGCGTGGGAAGTAATTGTTGTTTTGAAGTTTTATTTTATGTATTATTTGTTGGCTGTGAAGTTGTGTATTGTAGCTTTAGCTTCTTTAGATGTTACCTCTGTTTGGATTATGTCAAGTAAGAAGGGGTCACAAAATATTGCTTGAAACATGTCTGGCAATGCTACTAATTCTTAGGTTTCAGCTGGCAACAAGGATGTTGACCTACCAACTAGATAAGAAAAATGGAAAGCCAAGCTAAAAATGTTTTACCACAGCATTTGGAAGGCTTCCTCTCCCTTTTGTGTACATTTCATTACTTCAATTAAACTCAGTTTCTCTTCCCCCTCCCAAAAACATCCTCTGATTAAGTTATATGACAAGATAACATCCTCTGATTAAGTTATCAAGTGTGATATATGCAGATTCTTCCATAGACAAATGTTTTACCAATTTGAACAATATTCAGTTTTCGCTGTTTTATATTTTCAATGTGTGAATTAGCCCTGCAAAATGAAGGACAAATTTTGTTTTATTTTCTATTAAGTTTACGAGTTAAAACTTTTTGACATTTTCTGTACCTTATTATTTCTTTTAAAGGTAAGAAAGAGTTTGATCAGCTGAAGAGGAAAATGGCAAAGTCTAAGAGAGAATTTGGTCTGCTGGAGAGGAAAAGGTAG

mRNA sequence

ATGTCACTTCCACTCCGCTTCGGCTTTCGTATTCTCAGCTCACACTTGCCTCTGGAACTAAGAGAGCAGGACGATGAACTCTTATGTCAAAAAGCAGTTGGTCTTGTCATTGAGGCCGGTTGGATTTTCGCATCTGCTAGGAATACTGGTAAGAAAGAGTTTGATCAGCTGAAGAGGAAAATGGCAAAGTCTAAGAGAGAATTTGGTCTGCTGGAGAGGAAAAGGTAG

Coding sequence (CDS)

ATGTCACTTCCACTCCGCTTCGGCTTTCGTATTCTCAGCTCACACTTGCCTCTGGAACTAAGAGAGCAGGACGATGAACTCTTATGTCAAAAAGCAGTTGGTCTTGTCATTGAGGCCGGTTGGATTTTCGCATCTGCTAGGAATACTGGTAAGAAAGAGTTTGATCAGCTGAAGAGGAAAATGGCAAAGTCTAAGAGAGAATTTGGTCTGCTGGAGAGGAAAAGGTAG

Protein sequence

MSLPLRFGFRILSSHLPLELREQDDELLCQKAVGLVIEAGWIFASARNTGKKEFDQLKRKMAKSKREFGLLERKR

Homology

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BLAST of Csor.00g280230 vs. NCBI nr
Match: KAG6572320.1 (hypothetical protein SDJN03_29048, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145 bits (367), Expect = 7.81e-44
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MSLPLRFGFRILSSHLPLELREQDDELLCQKAVGLVIEAGWIFASARNTGKKEFDQLKRK 60
          MSLPLRFGFRILSSHLPLELREQDDELLCQKAVGLVIEAGWIFASARNTGKKEFDQLKRK
Sbjct: 1  MSLPLRFGFRILSSHLPLELREQDDELLCQKAVGLVIEAGWIFASARNTGKKEFDQLKRK 60

Query: 61 MAKSKREFGLLERKR 75
          MAKSKREFGLLERKR
Sbjct: 61 MAKSKREFGLLERKR 75

The following BLAST results are available for this feature:

BLAST of Csor.00g280230 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g280230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572320.1	7.81e-44	100.00	hypothetical protein SDJN03_29048, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g280230 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g280230 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 47..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g280230.m01	Csor.00g280230.m01	mRNA