Csor.00g280200 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g280200
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr19: 10483968 .. 10484511 (-)
RNA-Seq ExpressionCsor.00g280200
SyntenyCsor.00g280200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCTCTTTTCAAAGTTGGGATCTCGTGTGCGCCGGGCAGTGGACGCGCGACGCGTCTACCAGGAGAAGAGTTTGGAGAGAGTGACGAGTTCGAAGTCGGAATCTGCTTCTCATTGGCGGCCGGCGCTGCCGCCTATATTGGAGGATAGTAAAGGGGCTCGGTTGCCGGTGAAGAAATCCGGCGAAAAGAAGAAAACGTACAGCCGGCAAGTCCGATCTGTGACCAAGTCGTACGGCAGAGATGGTTACTGGTAATGAAACAAATTAAAAACAGTGGCCAAAGTGATTTAATTATCCTTAATTTTGTGAAATTTGCGGTTTTGGAAGTGTTTCTGAAAATCAATTTTTAGGTTTTTTTATAATCATTTTAATTATTGTAAAAACAATGAAAATTAAGAATGTTGTTTGAACTCATCAGGAGGAGCTCAACAATGGTGGCGATGCCGTTCTTTGCGCCGACGCCGTTCATGTTTTGAAGGCCAAATTTGGTAATACACAGTTCGCCGGCGGAGGATCGAAGCCGTCGCCGAAATTAATATAA

mRNA sequence

ATGCCTCTCTTTTCAAAGTTGGGATCTCGTGTGCGCCGGGCAGTGGACGCGCGACGCGTCTACCAGGAGAAGAGTTTGGAGAGAGTGACGAGTTCGAAGTCGGAATCTGCTTCTCATTGGCGGCCGGCGCTGCCGCCTATATTGGAGGATAGTAAAGGGGCTCGGTTGCCGGTGAAGAAATCCGGCGAAAAGAAGAAAACGTACAGCCGGCAAGAGGAGCTCAACAATGGTGGCGATGCCGTTCTTTGCGCCGACGCCGTTCATGTTTTGAAGGCCAAATTTGGTAATACACAGTTCGCCGGCGGAGGATCGAAGCCGTCGCCGAAATTAATATAA

Coding sequence (CDS)

ATGCCTCTCTTTTCAAAGTTGGGATCTCGTGTGCGCCGGGCAGTGGACGCGCGACGCGTCTACCAGGAGAAGAGTTTGGAGAGAGTGACGAGTTCGAAGTCGGAATCTGCTTCTCATTGGCGGCCGGCGCTGCCGCCTATATTGGAGGATAGTAAAGGGGCTCGGTTGCCGGTGAAGAAATCCGGCGAAAAGAAGAAAACGTACAGCCGGCAAGAGGAGCTCAACAATGGTGGCGATGCCGTTCTTTGCGCCGACGCCGTTCATGTTTTGAAGGCCAAATTTGGTAATACACAGTTCGCCGGCGGAGGATCGAAGCCGTCGCCGAAATTAATATAA

Protein sequence

MPLFSKLGSRVRRAVDARRVYQEKSLERVTSSKSESASHWRPALPPILEDSKGARLPVKKSGEKKKTYSRQEELNNGGDAVLCADAVHVLKAKFGNTQFAGGGSKPSPKLI
Homology
BLAST of Csor.00g280200 vs. NCBI nr
Match: KAG6572317.1 (hypothetical protein SDJN03_29045, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221 bits (562), Expect = 1.86e-72
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query: 1   MPLFSKLGSRVRRAVDARRVYQEKSLERVTSSKSESASHWRPALPPILEDSKGARLPVKK 60
           MPLFSKLGSRVRRAVDARRVYQEKSLERVTSSKSESASHWRPALPPILEDSKGARLPVKK
Sbjct: 1   MPLFSKLGSRVRRAVDARRVYQEKSLERVTSSKSESASHWRPALPPILEDSKGARLPVKK 60

Query: 61  SGEKKKTYSRQEELNNGGDAVLCADAVHVLKAKFGNTQFAGGGSKPSPKLI 111
           SGEKKKTYSRQEELNNGGDAVLCADAVHVLKAKFGNTQFAGGGSKPSPKLI
Sbjct: 61  SGEKKKTYSRQEELNNGGDAVLCADAVHVLKAKFGNTQFAGGGSKPSPKLI 111

BLAST of Csor.00g280200 vs. NCBI nr
Match: KAG7011929.1 (hypothetical protein SDJN02_26837, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135 bits (339), Expect = 1.44e-38
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0

Query: 1  MPLFSKLGSRVRRAVDARRVYQEKSLERVTSSKSESASHWRPALPPILEDSKGARLPVKK 60
          MPLFSKLGSRVRRAVDARRVYQEKSLERVTSSKSESASHWRPALPPILEDSKGARLPVKK
Sbjct: 1  MPLFSKLGSRVRRAVDARRVYQEKSLERVTSSKSESASHWRPALPPILEDSKGARLPVKK 60

Query: 61 SGEKKKTYSRQ 71
          SGEKKKT SRQ
Sbjct: 61 SGEKKKTSSRQ 71

BLAST of Csor.00g280200 vs. NCBI nr
Match: XP_023554648.1 (uncharacterized protein LOC111811838 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132 bits (332), Expect = 1.68e-37
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0

Query: 1  MPLFSKLGSRVRRAVDARRVYQEKSLERVTSSKSESASHWRPALPPILEDSKGARLPVKK 60
          MPLFSKLGSR+RRAVDARRVYQE+SLERVTSSKSESASHWRPALPPILEDSKGARLPVKK
Sbjct: 1  MPLFSKLGSRLRRAVDARRVYQEQSLERVTSSKSESASHWRPALPPILEDSKGARLPVKK 60

Query: 61 SGEKKKTYSRQ 71
          SGEKKKT SRQ
Sbjct: 61 SGEKKKTSSRQ 71

BLAST of Csor.00g280200 vs. NCBI nr
Match: XP_022952507.1 (uncharacterized protein LOC111455175 [Cucurbita moschata])

HSP 1 Score: 132 bits (332), Expect = 1.68e-37
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0

Query: 1  MPLFSKLGSRVRRAVDARRVYQEKSLERVTSSKSESASHWRPALPPILEDSKGARLPVKK 60
          MPLFSKLGSR+RRAVDARRVYQE+SLERVTSSKSESASHWRPALPPILEDSKGARLPVKK
Sbjct: 1  MPLFSKLGSRLRRAVDARRVYQEQSLERVTSSKSESASHWRPALPPILEDSKGARLPVKK 60

Query: 61 SGEKKKTYSRQ 71
          SGEKKKT SRQ
Sbjct: 61 SGEKKKTSSRQ 71

BLAST of Csor.00g280200 vs. NCBI nr
Match: XP_022969306.1 (uncharacterized protein LOC111468353 [Cucurbita maxima])

HSP 1 Score: 115 bits (288), Expect = 8.34e-31
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 1  MPLFSKLGSRVRRAVDARRVYQEKSLERVTSSKSESASHWRPALPPILEDSKGARLPVKK 60
          MPLFSKLGSR+RRA  ARRVYQE+SLERVTSSK  SASHW+PALPPILEDSKG R PVKK
Sbjct: 1  MPLFSKLGSRLRRAAVARRVYQEQSLERVTSSKLGSASHWQPALPPILEDSKGTRSPVKK 60

Query: 61 SGEKKKTYSRQ 71
          SGEKKKT S+Q
Sbjct: 61 SGEKKKTSSQQ 71

BLAST of Csor.00g280200 vs. ExPASy TrEMBL
Match: A0A6J1GKL7 (uncharacterized protein LOC111455175 OS=Cucurbita moschata OX=3662 GN=LOC111455175 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 8.13e-38
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0

Query: 1  MPLFSKLGSRVRRAVDARRVYQEKSLERVTSSKSESASHWRPALPPILEDSKGARLPVKK 60
          MPLFSKLGSR+RRAVDARRVYQE+SLERVTSSKSESASHWRPALPPILEDSKGARLPVKK
Sbjct: 1  MPLFSKLGSRLRRAVDARRVYQEQSLERVTSSKSESASHWRPALPPILEDSKGARLPVKK 60

Query: 61 SGEKKKTYSRQ 71
          SGEKKKT SRQ
Sbjct: 61 SGEKKKTSSRQ 71

BLAST of Csor.00g280200 vs. ExPASy TrEMBL
Match: A0A6J1HXF5 (uncharacterized protein LOC111468353 OS=Cucurbita maxima OX=3661 GN=LOC111468353 PE=4 SV=1)

HSP 1 Score: 115 bits (288), Expect = 4.04e-31
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 1  MPLFSKLGSRVRRAVDARRVYQEKSLERVTSSKSESASHWRPALPPILEDSKGARLPVKK 60
          MPLFSKLGSR+RRA  ARRVYQE+SLERVTSSK  SASHW+PALPPILEDSKG R PVKK
Sbjct: 1  MPLFSKLGSRLRRAAVARRVYQEQSLERVTSSKLGSASHWQPALPPILEDSKGTRSPVKK 60

Query: 61 SGEKKKTYSRQ 71
          SGEKKKT S+Q
Sbjct: 61 SGEKKKTSSQQ 71

BLAST of Csor.00g280200 vs. ExPASy TrEMBL
Match: A0A5D3C9U7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003940 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.41e-08
Identity = 41/84 (48.81%), Postives = 48/84 (57.14%), Query Frame = 0

Query: 1  MPLFSKLGSRVRRAVDARRVY----------QEKSLERVTSSKSESASHWRPALPPILED 60
          M  FSK  S  R A  A RVY           E+S+ R  SSKS+SA+HWRPAL  I+ED
Sbjct: 1  MSFFSKFSSCWRSAAVAPRVYLGDAVSEEVKAEQSVVRPRSSKSDSAAHWRPALDAIVED 60

Query: 61 SKGARLPVKKSGEKK---KTYSRQ 71
           +GA+   KKS EKK   KT  RQ
Sbjct: 61 GRGAQSRWKKSREKKPEKKTSGRQ 84

BLAST of Csor.00g280200 vs. ExPASy TrEMBL
Match: A0A1S3C217 (uncharacterized protein LOC103495564 OS=Cucumis melo OX=3656 GN=LOC103495564 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.97e-08
Identity = 41/84 (48.81%), Postives = 48/84 (57.14%), Query Frame = 0

Query: 1  MPLFSKLGSRVRRAVDARRVY----------QEKSLERVTSSKSESASHWRPALPPILED 60
          M  FSK  S  R A  A RVY           E+S+ R  SSKS+SA+HW+PAL  I+ED
Sbjct: 1  MSFFSKFSSCWRSAAVAPRVYLGDAVSEEVKAEQSVVRPRSSKSDSAAHWQPALDAIVED 60

Query: 61 SKGARLPVKKSGEKK---KTYSRQ 71
           KGA+   KKS EKK   KT  RQ
Sbjct: 61 GKGAQSRWKKSREKKPEKKTSGRQ 84

BLAST of Csor.00g280200 vs. ExPASy TrEMBL
Match: A0A0A0K279 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044930 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.11e-05
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 20 VYQEKSLERVTSSKSESASHWRPALPPILEDSKGARLPVKKSGEKK 65
          V  E+ +    SSKSESA+HWRPAL  I+EDS GA    KKS ++K
Sbjct: 27 VKAEQGVTSPRSSKSESAAHWRPALAAIVEDSNGAEWRCKKSSKRK 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6572317.11.86e-72100.00hypothetical protein SDJN03_29045, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011929.11.44e-3898.59hypothetical protein SDJN02_26837, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023554648.11.68e-3795.77uncharacterized protein LOC111811838 [Cucurbita pepo subsp. pepo][more]
XP_022952507.11.68e-3795.77uncharacterized protein LOC111455175 [Cucurbita moschata][more]
XP_022969306.18.34e-3184.51uncharacterized protein LOC111468353 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1GKL78.13e-3895.77uncharacterized protein LOC111455175 OS=Cucurbita moschata OX=3662 GN=LOC1114551... [more]
A0A6J1HXF54.04e-3184.51uncharacterized protein LOC111468353 OS=Cucurbita maxima OX=3661 GN=LOC111468353... [more]
A0A5D3C9U71.41e-0848.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C2172.97e-0848.81uncharacterized protein LOC103495564 OS=Cucumis melo OX=3656 GN=LOC103495564 PE=... [more]
A0A0A0K2797.11e-0554.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044930 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g280200.m01Csor.00g280200.m01mRNA