Csor.00g279610 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g279610
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Nucleic acid-binding, OB-fold-like protein
Location	Csor_Chr19: 10218488 .. 10219869 (+)
RNA-Seq Expression	Csor.00g279610
Synteny	Csor.00g279610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGGCAACAGTGAATGCTCCACCAAAGAGGAAGCCTGTGTTTATAAAAGTAGAAGAGCTAAAGCCTGGTACCAGCGGCCACACTCTCACGGTCAAGGTGGTGAGCTCCAAAAATGTGAAGGCTGTCAATAAAGGTGGACGATCCACCGTGATTGCGGCTCGCCCTCAGCAATTAACTCGAATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTGCATCGTCTTCACAGCTCGAAACGACCAAGGTACGTTTCTCCAGCCTTATAATACCTAATTTTTCTCATCTTTGAGATTTTCCAATGTGTTTTCTGGGATGATTTTGTGTATGGTTACGAACAAATTTGGATATGATGAATGGATATTAGTTTCCATTTCCTTGGATGTTCTTTAAAGATTGGGATAAGGTTTCTTCGTTTCTGTTGGAATGTTTTGCTGAGATTGAGAATTCTTTTGGAACAGTGAGTGGTCATCTTTTTTGCTAGTGAATTTCATGTTTGATAATTGAGGAATTACAATATAGGCTACAAAAAAACTCTCTTTTATGGGTATTGTATAAGGTTACCAAGGCCTGAAATAGAGAAGCTTTCTGGGCATAAATGCTTAAAAGTACCTTTGTTTTACCATTAAAATACAATTCTAAGAACTTAAAAAGTCATTCCAAATAGACTCCTTCCGAGGCTTGTGTCATTATTGTTCAACATAAATGTGCAGATTTGAAAGGATGCCTTTAGTTCTAGCTCTTGAAGGATCCTTGAGGACAGTTAGTGTTTGAGTTTTTTGGTCTGTGAGTTTCTTCTTTATATTTCTTGATCAAGTCATTCTCGAAAGTGTTATGAGGGATGTTACTGGTCAGAGTAGAGCTTCTATTATGTTCATCTCCTTTAAACCAGAAGCTTTGAGATGGCGGATTAAGGTGTGCATGGGTGTAGCTGTAAATGTTACTCTTCATTTGAAATCTGTTGTCAATCTAACTGCATAGCCGTTTGTTTATATATTGCCTTGAACCTAGCGATTGGTATTAAGAACCTATTGAAATCCTTATGTGGGTTTGGTGTAAAGGAGTAAAGGAATCAGATGTTACATAACTGTCATATTGTGTGTGTCATGTATATTATCGTGTGCGTACCCTCTTAAATTTTTGCTTCGTATTAAGTTATGTTATCTAAACAAATGGTTGTAATTTTTGCAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTTAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGTCGAATTGAAGTCGCTGAACCAGGCAACTTTGAGGTTAAAGAGGACAACAATCTGTCACTGGTTGAATATGAATTGGTTAATGTTGAAGAATGA

mRNA sequence

ATGGCGACGGCAACAGTGAATGCTCCACCAAAGAGGAAGCCTGTGTTTATAAAAGTAGAAGAGCTAAAGCCTGGTACCAGCGGCCACACTCTCACGGTCAAGGTGGTGAGCTCCAAAAATGTGAAGGCTGTCAATAAAGGTGGACGATCCACCGTGATTGCGGCTCGCCCTCAGCAATTAACTCGAATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTGCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTTAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGTCGAATTGAAGTCGCTGAACCAGGCAACTTTGAGGTTAAAGAGGACAACAATCTGTCACTGGTTGAATATGAATTGGTTAATGTTGAAGAATGA

Coding sequence (CDS)

ATGGCGACGGCAACAGTGAATGCTCCACCAAAGAGGAAGCCTGTGTTTATAAAAGTAGAAGAGCTAAAGCCTGGTACCAGCGGCCACACTCTCACGGTCAAGGTGGTGAGCTCCAAAAATGTGAAGGCTGTCAATAAAGGTGGACGATCCACCGTGATTGCGGCTCGCCCTCAGCAATTAACTCGAATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTGCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTTAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGTCGAATTGAAGTCGCTGAACCAGGCAACTTTGAGGTTAAAGAGGACAACAATCTGTCACTGGTTGAATATGAATTGGTTAATGTTGAAGAATGA

Protein sequence

MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQLTRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPGNFEVKEDNNLSLVEYELVNVEE

Homology

[Close]

BLAST of Csor.00g279610 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.1e-48
Identity = 95/142 (66.90%), Postives = 112/142 (78.87%), Query Frame = 0


Query: 2   ATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQLT 61
           A AT  +  KRKPVF+KVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +
Sbjct: 8   AVATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPS 67

Query: 62  RISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAE 121
           RI ECL+GDETGCI+FTARNDQVD+MKPG TV LRN++IDMFKG+MRL VDKWGRIE   
Sbjct: 68  RIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATG 127

Query: 122 PGNFEVKEDNNLSLVEYELVNV 144
             +F VKEDNNLSLVEYEL+NV
Sbjct: 128 AASFTVKEDNNLSLVEYELINV 149

[Close]

BLAST of Csor.00g279610 vs. ExPASy Swiss-Prot
Match: Q97W73 (Single-stranded DNA binding protein Ssb OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057 GN=ssb PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.7e-04
Identity = 33/109 (30.28%), Postives = 46/109 (42.20%), Query Frame = 0


Query: 18  KVEELKPGTSGHTLTVKVVSSKNVKAV-NKGGRSTVIAARPQQLTRISECLVGDETGCIV 77
           KV  LKP      +TV+V+ +   + +  K G  T           ISE +VGDETG + 
Sbjct: 4   KVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRT-----------ISEAIVGDETGRVK 63

Query: 78  FTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPGNF 126
            T        +K G  V + NA    FKG ++L      +I  A    F
Sbjct: 64  LTLWGKHAGSIKEGQVVKIENAWTTAFKGQVQLNAGSKTKIAEASEDGF 101

[Close]

BLAST of Csor.00g279610 vs. NCBI nr
Match: XP_022952568.1 (uncharacterized protein At4g28440-like [Cucurbita moschata] >KAG6572258.1 hypothetical protein SDJN03_28986, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 285 bits (728), Expect = 1.12e-96
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 60
           MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL
Sbjct: 1   MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 60

Query: 61  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA
Sbjct: 61  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPGNFEVKEDNNLSLVEYELVNVEE 145
           EPGNFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPGNFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Csor.00g279610 vs. NCBI nr
Match: XP_023554635.1 (uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282 bits (721), Expect = 1.31e-95
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 60
           MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVV SKNVKAVNKGGRSTVIAARPQQL
Sbjct: 1   MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVISKNVKAVNKGGRSTVIAARPQQL 60

Query: 61  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAK+DMFKGSMRLAVDKWGRIEVA
Sbjct: 61  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKVDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPGNFEVKEDNNLSLVEYELVNVEE 145
           EPGNFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPGNFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Csor.00g279610 vs. NCBI nr
Match: XP_022969293.1 (uncharacterized protein At4g28440-like [Cucurbita maxima])

HSP 1 Score: 280 bits (715), Expect = 1.07e-94
Identity = 143/145 (98.62%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 60
           MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL
Sbjct: 1   MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 60

Query: 61  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA
Sbjct: 61  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPGNFEVKEDNNLSLVEYELVNVEE 145
           EPGN  VKEDNNLSLVEYELVNVEE
Sbjct: 121 EPGNLGVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Csor.00g279610 vs. NCBI nr
Match: KAG7011887.1 (hypothetical protein SDJN02_26794 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 285 bits (728), Expect = 4.00e-91
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 60
           MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL
Sbjct: 412 MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 471

Query: 61  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA
Sbjct: 472 TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 531

Query: 121 EPGNFEVKEDNNLSLVEYELVNVEE 145
           EPGNFEVKEDNNLSLVEYELVNVEE
Sbjct: 532 EPGNFEVKEDNNLSLVEYELVNVEE 556

[Close]

BLAST of Csor.00g279610 vs. NCBI nr
Match: XP_038887250.1 (uncharacterized protein At4g28440-like [Benincasa hispida])

HSP 1 Score: 266 bits (679), Expect = 3.32e-89
Identity = 134/145 (92.41%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 60
           MAT  VNAP KRKPVF+KVEELKPGTSGHTLTVKVVSSKNVK VNKGGRST++ ARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETG IVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPGNFEVKEDNNLSLVEYELVNVEE 145
           EP NFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Csor.00g279610 vs. ExPASy TrEMBL
Match: A0A6J1GKZ2 (uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC111455219 PE=4 SV=1)

HSP 1 Score: 285 bits (728), Expect = 5.41e-97
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 60
           MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL
Sbjct: 1   MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 60

Query: 61  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA
Sbjct: 61  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPGNFEVKEDNNLSLVEYELVNVEE 145
           EPGNFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPGNFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Csor.00g279610 vs. ExPASy TrEMBL
Match: A0A6J1I0J9 (uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC111468342 PE=4 SV=1)

HSP 1 Score: 280 bits (715), Expect = 5.20e-95
Identity = 143/145 (98.62%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 60
           MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL
Sbjct: 1   MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 60

Query: 61  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA
Sbjct: 61  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPGNFEVKEDNNLSLVEYELVNVEE 145
           EPGN  VKEDNNLSLVEYELVNVEE
Sbjct: 121 EPGNLGVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Csor.00g279610 vs. ExPASy TrEMBL
Match: A0A5A7UWS4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00200 PE=4 SV=1)

HSP 1 Score: 264 bits (675), Expect = 6.55e-89
Identity = 133/145 (91.72%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 60
           MAT   NAP KRKPVF+KVEELKPGTSGHTLTVKVVSSKNVK VNKGGRST++ ARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETG IVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPGNFEVKEDNNLSLVEYELVNVEE 145
           EP NFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Csor.00g279610 vs. ExPASy TrEMBL
Match: A0A1S3C119 (uncharacterized protein At4g28440 OS=Cucumis melo OX=3656 GN=LOC103495649 PE=4 SV=1)

HSP 1 Score: 264 bits (675), Expect = 6.55e-89
Identity = 133/145 (91.72%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 60
           MAT   NAP KRKPVF+KVEELKPGTSGHTLTVKVVSSKNVK VNKGGRST++ ARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETG IVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPGNFEVKEDNNLSLVEYELVNVEE 145
           EP NFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Csor.00g279610 vs. ExPASy TrEMBL
Match: A0A6J1C327 (uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC111007815 PE=4 SV=1)

HSP 1 Score: 264 bits (674), Expect = 9.30e-89
Identity = 135/145 (93.10%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 60
           MATA VNAP KRKPVFIKVEELKPGTSGHTL VKVVSSKNVK VNKGGRS ++ ARPQQL
Sbjct: 1   MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKMVNKGGRSAMLTARPQQL 60

Query: 61  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETG IVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPGNFEVKEDNNLSLVEYELVNVEE 145
           EP NFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Csor.00g279610 vs. TAIR 10
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-49
Identity = 95/142 (66.90%), Postives = 112/142 (78.87%), Query Frame = 0


Query: 2   ATATVNAPPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQLT 61
           A AT  +  KRKPVF+KVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +
Sbjct: 8   AVATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPS 67

Query: 62  RISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAE 121
           RI ECL+GDETGCI+FTARNDQVD+MKPG TV LRN++IDMFKG+MRL VDKWGRIE   
Sbjct: 68  RIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATG 127

Query: 122 PGNFEVKEDNNLSLVEYELVNV 144
             +F VKEDNNLSLVEYEL+NV
Sbjct: 128 AASFTVKEDNNLSLVEYELINV 149

[Close]

BLAST of Csor.00g279610 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 188.7 bits (478), Expect = 3.2e-48
Identity = 101/145 (69.66%), Postives = 112/145 (77.24%), Query Frame = 0


Query: 7   NAPP------KRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 66
           N PP      K+KPVF+KV++LKPGTSGHTLTVKVV   +V    K G ++    RP   
Sbjct: 42  NQPPQHTPQEKKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVP--QKPGAASSSHLRP--- 101

Query: 67  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 126
            RISECLVGDET CI+FTARNDQV++MKPG TV LRNAKIDMFKGSMRLAVDKWGRIE  
Sbjct: 102 ARISECLVGDETACILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEAT 161

Query: 127 EPGNFEVKEDNNLSLVEYELVNVEE 146
           EP +  VKEDNNLSLVEYELVNV E
Sbjct: 162 EPADITVKEDNNLSLVEYELVNVVE 181

[Close]

BLAST of Csor.00g279610 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-44
Identity = 91/134 (67.91%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 12  RKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQLTRISECLVGDE 71
           +KP F KV++L+PGTSGH + VK+VS+   K V + GR+    AR     RISEC+VGDE
Sbjct: 10  KKPAFTKVDQLRPGTSGHNVNVKIVST---KMVLQKGRADGPQARQ---LRISECIVGDE 69

Query: 72  TGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPGNFEVKEDN 131
           TG IVFTARNDQVD+MK G+TVTLRNAKIDM+KGSMRLAVDKWGR+EV EP +F+VKED 
Sbjct: 70  TGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKEDT 129

Query: 132 NLSLVEYELVNVEE 146
           N+SL+EYELVNV E
Sbjct: 130 NMSLIEYELVNVVE 137

[Close]

BLAST of Csor.00g279610 vs. TAIR 10
Match: AT1G03810.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 173.3 bits (438), Expect = 1.4e-43
Identity = 88/141 (62.41%), Postives = 108/141 (76.60%), Query Frame = 0


Query: 3   TATVNA--PPKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQL 62
           TA  NA   PKRKPVF+KV++LKPGTSGHTL VKV+ S  VK      R + +  +P   
Sbjct: 4   TANTNATTAPKRKPVFVKVDQLKPGTSGHTLIVKVLESNPVKPAI---RKSSLTQQPISS 63

Query: 63  TRISECLVGDETGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 122
            RI+ECL+GD+TGCI+FTARNDQVD+MK G TV LRNAKID+FK +MR+AVD+WGRIE+ 
Sbjct: 64  PRIAECLIGDDTGCILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEIT 123

Query: 123 EPGNFEVKEDNNLSLVEYELV 142
            P +FEV   NNLSLVEYE++
Sbjct: 124 GPVSFEVNRANNLSLVEYEVI 141

[Close]

BLAST of Csor.00g279610 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 171.8 bits (434), Expect = 4.1e-43
Identity = 90/134 (67.16%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 12  RKPVFIKVEELKPGTSGHTLTVKVVSSKNVKAVNKGGRSTVIAARPQQLTRISECLVGDE 71
           RKPVF KV EL+PGT+GH+L VKVV   N K V + G    +  + +Q+ RI+ECLVGDE
Sbjct: 9   RKPVFTKVNELRPGTNGHSLNVKVV---NTKMVMQRGGGRPMGPQSRQM-RIAECLVGDE 68

Query: 72  TGCIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA-EPGNFEVKED 131
           TG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRLAVD+WGR+EVA EP +  VK+D
Sbjct: 69  TGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDD 128

Query: 132 NNLSLVEYELVNVE 145
           NNLSL+EYELV+VE
Sbjct: 129 NNLSLIEYELVSVE 138

The following BLAST results are available for this feature:

BLAST of Csor.00g279610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49453	3.1e-48	66.90	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]
Q97W73	4.7e-04	30.28	Single-stranded DNA binding protein Ssb OS=Saccharolobus solfataricus (strain AT...	[more]

BLAST of Csor.00g279610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952568.1	1.12e-96	100.00	uncharacterized protein At4g28440-like [Cucurbita moschata] >KAG6572258.1 hypoth...	[more]
XP_023554635.1	1.31e-95	98.62	uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]	[more]
XP_022969293.1	1.07e-94	98.62	uncharacterized protein At4g28440-like [Cucurbita maxima]	[more]
KAG7011887.1	4.00e-91	100.00	hypothetical protein SDJN02_26794 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038887250.1	3.32e-89	92.41	uncharacterized protein At4g28440-like [Benincasa hispida]	[more]

BLAST of Csor.00g279610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GKZ2	5.41e-97	100.00	uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1I0J9	5.20e-95	98.62	uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC1114683...	[more]
A0A5A7UWS4	6.55e-89	91.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C119	6.55e-89	91.72	uncharacterized protein At4g28440 OS=Cucumis melo OX=3656 GN=LOC103495649 PE=4 S...	[more]
A0A6J1C327	9.30e-89	93.10	uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Csor.00g279610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28440.1	2.2e-49	66.90	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G33845.1	3.2e-48	69.66	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G23750.1	1.3e-44	67.91	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G03810.1	1.4e-43	62.41	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.1	4.1e-43	67.16	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 26..135 e-value: 9.9E-44 score: 149.8
None	No IPR available	PANTHER	PTHR31472	OS05G0244600 PROTEIN	coord: 4..144
None	No IPR available	PANTHER	PTHR31472:SF13	EXPRESSED PROTEIN	coord: 4..144
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 30..119 e-value: 2.03549E-17 score: 69.9593
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 7..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g279610.m01	Csor.00g279610.m01	mRNA