Csor.00g279590 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g279590
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionTranscription initiation factor TFIID subunit 6-like
LocationCsor_Chr19: 10212284 .. 10212568 (-)
RNA-Seq ExpressionCsor.00g279590
SyntenyCsor.00g279590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCAGGCTCTATTATGCGGACGAATGCAAGAGTTATCACCACCACTTTCCCAAGTAAGATCTTGCAACTTTCTTTGAATGGAACAAATGCAGACTGCTTAGAAGGGCGGGCGCCCCTCAAGAAGATGGTAATTGATTGCGCAATGGGTGTCATGCTAACTAAATCAGTGGCATTACAAATGGAAGGAACAGTCGTTCCAGCTGCCTCTGGCAAGCCCAATCTGGTTTTGTCTACATCTTCTCCACAGATGCAAGAAAGATGCAAGAAAGGGCAAGCATGA

mRNA sequence

ATGCCTGCAGGCTCTATTATGCGGACGAATGCAAGAGTTATCACCACCACTTTCCCAAGTAAGATCTTGCAACTTTCTTTGAATGGAACAAATGCAGACTGCTTAGAAGGGCGGGCGCCCCTCAAGAAGATGGTAATTGATTGCGCAATGGGTGTCATGCTAACTAAATCAGTGGCATTACAAATGGAAGGAACAGTCGTTCCAGCTGCCTCTGGCAAGCCCAATCTGGTTTTGTCTACATCTTCTCCACAGATGCAAGAAAGATGCAAGAAAGGGCAAGCATGA

Coding sequence (CDS)

ATGCCTGCAGGCTCTATTATGCGGACGAATGCAAGAGTTATCACCACCACTTTCCCAAGTAAGATCTTGCAACTTTCTTTGAATGGAACAAATGCAGACTGCTTAGAAGGGCGGGCGCCCCTCAAGAAGATGGTAATTGATTGCGCAATGGGTGTCATGCTAACTAAATCAGTGGCATTACAAATGGAAGGAACAGTCGTTCCAGCTGCCTCTGGCAAGCCCAATCTGGTTTTGTCTACATCTTCTCCACAGATGCAAGAAAGATGCAAGAAAGGGCAAGCATGA

Protein sequence

MPAGSIMRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVMLTKSVALQMEGTVVPAASGKPNLVLSTSSPQMQERCKKGQA
Homology
[Close]
BLAST of Csor.00g279590 vs. NCBI nr
Match: KAG6572256.1 (hypothetical protein SDJN03_28984, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184 bits (468), Expect = 1.18e-58
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MPAGSIMRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVMLTKSVAL 60
          MPAGSIMRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVMLTKSVAL
Sbjct: 1  MPAGSIMRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVMLTKSVAL 60

Query: 61 QMEGTVVPAASGKPNLVLSTSSPQMQERCKKGQA 94
          QMEGTVVPAASGKPNLVLSTSSPQMQERCKKGQA
Sbjct: 61 QMEGTVVPAASGKPNLVLSTSSPQMQERCKKGQA 94

[Close]
BLAST of Csor.00g279590 vs. NCBI nr
Match: XP_008455502.1 (PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >XP_016901765.1 PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >XP_016901766.1 PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >KAA0059113.1 transcription initiation factor TFIID subunit 6-like [Cucumis melo var. makuwa] >TYK21618.1 transcription initiation factor TFIID subunit 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (252), Expect = 1.15e-22
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = 0 

Query: 2   PAGSIMRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVMLTKSVALQ 61
           PAGS++RTNAR+ITTTFP+K         NAD LEG+ PLK+M+ID  MGVMLT S A  
Sbjct: 402 PAGSVLRTNARIITTTFPNK------RKANADYLEGQPPLKRMLIDGPMGVMLTNSSASH 461

Query: 62  MEGTVVPAASGKPNLVLSTSSPQMQ 86
           MEGTVVPAASG  N+V  TSS QMQ
Sbjct: 462 MEGTVVPAASGNSNVVSPTSSGQMQ 480

[Close]
BLAST of Csor.00g279590 vs. NCBI nr
Match: XP_038887950.1 (transcription initiation factor TFIID subunit 6-like isoform X2 [Benincasa hispida] >XP_038887951.1 transcription initiation factor TFIID subunit 6-like isoform X2 [Benincasa hispida])

HSP 1 Score: 100 bits (249), Expect = 2.55e-22
Identity = 57/92 (61.96%), Postives = 63/92 (68.48%), Query Frame = 0 

Query: 1   MPAGSIMRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVMLTKSVAL 60
           MPA S+++TNARVITT FP+K         NAD LEG+ PLKKMV D  MGV+LTKS AL
Sbjct: 354 MPASSVLQTNARVITTAFPNK------RKANADYLEGQPPLKKMVTDGPMGVILTKSSAL 413

Query: 61  QMEGTVVPAASGKPNLVLSTSSPQMQERCKKG 92
            MEGTVVPAAS   NLV STS  QMQ     G
Sbjct: 414 HMEGTVVPAASSNSNLVSSTSFRQMQNEIMSG 439

[Close]
BLAST of Csor.00g279590 vs. NCBI nr
Match: XP_038887949.1 (transcription initiation factor TFIID subunit 6-like isoform X1 [Benincasa hispida])

HSP 1 Score: 100 bits (249), Expect = 2.95e-22
Identity = 57/92 (61.96%), Postives = 63/92 (68.48%), Query Frame = 0 

Query: 1   MPAGSIMRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVMLTKSVAL 60
           MPA S+++TNARVITT FP+K         NAD LEG+ PLKKMV D  MGV+LTKS AL
Sbjct: 401 MPASSVLQTNARVITTAFPNK------RKANADYLEGQPPLKKMVTDGPMGVILTKSSAL 460

Query: 61  QMEGTVVPAASGKPNLVLSTSSPQMQERCKKG 92
            MEGTVVPAAS   NLV STS  QMQ     G
Sbjct: 461 HMEGTVVPAASSNSNLVSSTSFRQMQNEIMSG 486

[Close]
BLAST of Csor.00g279590 vs. NCBI nr
Match: XP_031744913.1 (transcription initiation factor TFIID subunit 6 [Cucumis sativus] >KGN43460.1 hypothetical protein Csa_020238 [Cucumis sativus])

HSP 1 Score: 100 bits (249), Expect = 2.96e-22
Identity = 56/85 (65.88%), Postives = 61/85 (71.76%), Query Frame = 0 

Query: 2   PAGSIMRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVMLTKSVALQ 61
           PAGS++RTNAR ITTTFP+K         NAD LEG+ PLK+M ID  MGVMLT S A  
Sbjct: 402 PAGSVLRTNARTITTTFPNK------RKANADYLEGQPPLKRMSIDGPMGVMLTNSSASH 461

Query: 62  MEGTVVPAASGKPNLVLSTSSPQMQ 86
           MEGTVVPAASG  NLV  TSS QMQ
Sbjct: 462 MEGTVVPAASGNSNLVSPTSSGQMQ 480

[Close]
BLAST of Csor.00g279590 vs. ExPASy TrEMBL
Match: A0A1S3C124 (transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=LOC103495654 PE=3 SV=1)

HSP 1 Score: 101 bits (252), Expect = 5.56e-23
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = 0 

Query: 2   PAGSIMRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVMLTKSVALQ 61
           PAGS++RTNAR+ITTTFP+K         NAD LEG+ PLK+M+ID  MGVMLT S A  
Sbjct: 402 PAGSVLRTNARIITTTFPNK------RKANADYLEGQPPLKRMLIDGPMGVMLTNSSASH 461

Query: 62  MEGTVVPAASGKPNLVLSTSSPQMQ 86
           MEGTVVPAASG  N+V  TSS QMQ
Sbjct: 462 MEGTVVPAASGNSNVVSPTSSGQMQ 480

[Close]
BLAST of Csor.00g279590 vs. ExPASy TrEMBL
Match: A0A5A7UT52 (Transcription initiation factor TFIID subunit 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00160 PE=3 SV=1)

HSP 1 Score: 101 bits (252), Expect = 5.56e-23
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = 0 

Query: 2   PAGSIMRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVMLTKSVALQ 61
           PAGS++RTNAR+ITTTFP+K         NAD LEG+ PLK+M+ID  MGVMLT S A  
Sbjct: 402 PAGSVLRTNARIITTTFPNK------RKANADYLEGQPPLKRMLIDGPMGVMLTNSSASH 461

Query: 62  MEGTVVPAASGKPNLVLSTSSPQMQ 86
           MEGTVVPAASG  N+V  TSS QMQ
Sbjct: 462 MEGTVVPAASGNSNVVSPTSSGQMQ 480

[Close]
BLAST of Csor.00g279590 vs. ExPASy TrEMBL
Match: A0A0A0K1B8 (TAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G037630 PE=3 SV=1)

HSP 1 Score: 100 bits (249), Expect = 1.43e-22
Identity = 56/85 (65.88%), Postives = 61/85 (71.76%), Query Frame = 0 

Query: 2   PAGSIMRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVMLTKSVALQ 61
           PAGS++RTNAR ITTTFP+K         NAD LEG+ PLK+M ID  MGVMLT S A  
Sbjct: 402 PAGSVLRTNARTITTTFPNK------RKANADYLEGQPPLKRMSIDGPMGVMLTNSSASH 461

Query: 62  MEGTVVPAASGKPNLVLSTSSPQMQ 86
           MEGTVVPAASG  NLV  TSS QMQ
Sbjct: 462 MEGTVVPAASGNSNLVSPTSSGQMQ 480

[Close]
BLAST of Csor.00g279590 vs. ExPASy TrEMBL
Match: A0A1S4DXQ6 (transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=LOC103491293 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.18e-20
Identity = 53/86 (61.63%), Postives = 61/86 (70.93%), Query Frame = 0 

Query: 1   MPAGSIMRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVMLTKSVAL 60
           MPAGSI+RTNARVITTTFP+K         NAD + G+APLKKMV+D  MGVM T S A 
Sbjct: 401 MPAGSILRTNARVITTTFPNK------RKANADHIRGQAPLKKMVMDSPMGVMPTNSSAS 460

Query: 61  QMEGTVVPAASGKPNLVLSTSSPQMQ 86
            MEG V PA+SG  +LVL TSS  +Q
Sbjct: 461 HMEGAVNPASSGNSSLVLPTSSQPLQ 480

[Close]
BLAST of Csor.00g279590 vs. ExPASy TrEMBL
Match: A0A5A7URU3 (Transcription initiation factor TFIID subunit 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00270 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.18e-20
Identity = 53/86 (61.63%), Postives = 61/86 (70.93%), Query Frame = 0 

Query: 1   MPAGSIMRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVMLTKSVAL 60
           MPAGSI+RTNARVITTTFP+K         NAD + G+APLKKMV+D  MGVM T S A 
Sbjct: 401 MPAGSILRTNARVITTTFPNK------RKANADHIRGQAPLKKMVMDSPMGVMPTNSSAS 460

Query: 61  QMEGTVVPAASGKPNLVLSTSSPQMQ 86
            MEG V PA+SG  +LVL TSS  +Q
Sbjct: 461 HMEGAVNPASSGNSSLVLPTSSQPLQ 480

The following BLAST results are available for this feature:
BLAST of Csor.00g279590 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g279590 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6572256.11.18e-58100.00hypothetical protein SDJN03_28984, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008455502.11.15e-2264.71PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >... [more]
XP_038887950.12.55e-2261.96transcription initiation factor TFIID subunit 6-like isoform X2 [Benincasa hispi... [more]
XP_038887949.12.95e-2261.96transcription initiation factor TFIID subunit 6-like isoform X1 [Benincasa hispi... [more]
XP_031744913.12.96e-2265.88transcription initiation factor TFIID subunit 6 [Cucumis sativus] >KGN43460.1 hy... [more]
BLAST of Csor.00g279590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C1245.56e-2364.71transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=... [more]
A0A5A7UT525.56e-2364.71Transcription initiation factor TFIID subunit 6-like OS=Cucumis melo var. makuwa... [more]
A0A0A0K1B81.43e-2265.88TAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G037630 PE=3 SV... [more]
A0A1S4DXQ61.18e-2061.63transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=... [more]
A0A5A7URU31.18e-2061.63Transcription initiation factor TFIID subunit 6-like OS=Cucumis melo var. makuwa... [more]
BLAST of Csor.00g279590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g279590.m01Csor.00g279590.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051123 RNA polymerase II preinitiation complex assembly
cellular_component GO:0070461 SAGA-type complex
cellular_component GO:0005669 transcription factor TFIID complex
molecular_function GO:0016251 RNA polymerase II general transcription initiation factor activity
molecular_function GO:0003713 transcription coactivator activity