Csor.00g279510 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g279510
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionProtochlorophyllide reductase
LocationCsor_Chr19: 10185039 .. 10185362 (-)
RNA-Seq ExpressionCsor.00g279510
SyntenyCsor.00g279510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCGGTTGGCGGCGGCCGTGAGAAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACAGCGCCGGCGGCGGAGCTGACGGCGGAGGTAGGGTAATCGATGGCAACCGGAGAGACGGAAATTCATATGGGTTTTCAATGATTTACACTCTCCTTCGAACCCCATTTTCGCTTCTCTCTTGCTTCTCTCAACCTCACGTTAATGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGCGATATGCAATCTTAATGTAA

mRNA sequence

ATGTGGCGGTTGGCGGCGGCCGTGAGAAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACAGCGCCGGCGGCGGAGCTGACGGCGGAGGTAGGGTAATCGATGGCAACCGGAGAGACGGAAATTCATATGGGTTTTCAATGATTTACACTCTCCTTCGAACCCCATTTTCGCTTCTCTCTTGCTTCTCTCAACCTCACGTTAATGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGCGATATGCAATCTTAATGTAA

Coding sequence (CDS)

ATGTGGCGGTTGGCGGCGGCCGTGAGAAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACAGCGCCGGCGGCGGAGCTGACGGCGGAGGTAGGGTAATCGATGGCAACCGGAGAGACGGAAATTCATATGGGTTTTCAATGATTTACACTCTCCTTCGAACCCCATTTTCGCTTCTCTCTTGCTTCTCTCAACCTCACGTTAATGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGCGATATGCAATCTTAATGTAA

Protein sequence

MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVIDGNRRDGNSYGFSMIYTLLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Homology
BLAST of Csor.00g279510 vs. NCBI nr
Match: KAG6572248.1 (hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011878.1 hypothetical protein SDJN02_26785, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220 bits (560), Expect = 2.79e-72
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVIDGNRRDGNSYGFSMIYTLLR 60
           MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVIDGNRRDGNSYGFSMIYTLLR
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVIDGNRRDGNSYGFSMIYTLLR 60

Query: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107
           TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of Csor.00g279510 vs. NCBI nr
Match: XP_022969305.1 (uncharacterized protein LOC111468352 [Cucurbita maxima])

HSP 1 Score: 214 bits (544), Expect = 7.72e-70
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVIDGNRRDGNSYGFSMIYTLLR 60
           MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGG  VIDGNRR+GNSYGFSMIYTLLR
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR 60

Query: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107
           TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of Csor.00g279510 vs. NCBI nr
Match: XP_023554647.1 (uncharacterized protein LOC111811837 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211 bits (536), Expect = 1.28e-68
Identity = 103/107 (96.26%), Postives = 104/107 (97.20%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVIDGNRRDGNSYGFSMIYTLLR 60
           MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGG  VIDGNRR+ NSYGFSMIYTLLR
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRRERNSYGFSMIYTLLR 60

Query: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107
           TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of Csor.00g279510 vs. NCBI nr
Match: XP_038888385.1 (uncharacterized protein LOC120078235 [Benincasa hispida])

HSP 1 Score: 199 bits (506), Expect = 5.68e-64
Identity = 99/112 (88.39%), Postives = 105/112 (93.75%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMY--SAGGGADGGGRV---IDGNRRDGNSYGFSMI 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  + GGG DGGGRV   +DG+RR+GNSYGFSMI
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGAGGGGVDGGGRVAAVVDGDRREGNSYGFSMI 60

Query: 61  YTLLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107
           Y+LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112

BLAST of Csor.00g279510 vs. NCBI nr
Match: XP_031744820.1 (uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetical protein Csa_020583 [Cucumis sativus])

HSP 1 Score: 199 bits (505), Expect = 7.10e-64
Identity = 99/110 (90.00%), Postives = 104/110 (94.55%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRV---IDGNRRDGNSYGFSMIYT 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  GGG DGGGRV   +DG+RR+GNSYGFSMIY+
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMY--GGGVDGGGRVGAVVDGDRREGNSYGFSMIYS 60

Query: 61  LLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107
           LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  LLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108

BLAST of Csor.00g279510 vs. ExPASy TrEMBL
Match: A0A6J1HZK3 (uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352 PE=4 SV=1)

HSP 1 Score: 214 bits (544), Expect = 3.74e-70
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVIDGNRRDGNSYGFSMIYTLLR 60
           MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGG  VIDGNRR+GNSYGFSMIYTLLR
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR 60

Query: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107
           TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of Csor.00g279510 vs. ExPASy TrEMBL
Match: A0A5D3BTM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00140 PE=4 SV=1)

HSP 1 Score: 198 bits (504), Expect = 5.05e-64
Identity = 99/111 (89.19%), Postives = 104/111 (93.69%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRV----IDGNRRDGNSYGFSMIY 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  GGG DGGGRV    +DG+RR+GNSYGFSMIY
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMY--GGGVDGGGRVAAVVVDGDRREGNSYGFSMIY 60

Query: 61  TLLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107
           +LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

BLAST of Csor.00g279510 vs. ExPASy TrEMBL
Match: A0A6J1C6U0 (uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007908 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 1.66e-57
Identity = 89/107 (83.18%), Postives = 96/107 (89.72%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVIDGNRRDGNSYGFSMIYTLLR 60
           MWRLAA +RRNLHNIRKSPRVADESMY  GGG DGGG V + +RR GNSYGFSMIY++LR
Sbjct: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGGGG-DGGGIVAERDRRGGNSYGFSMIYSVLR 60

Query: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107
           TPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 106

BLAST of Csor.00g279510 vs. ExPASy TrEMBL
Match: A0A1S3C134 (uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 2.00e-56
Identity = 90/106 (84.91%), Postives = 96/106 (90.57%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRV----IDGNRRDGNSYGFSMIY 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  GGG DGGGRV    +DG+RR+GNSYGFSMIY
Sbjct: 41  MWRLAAAVRRNLHNIRKSPRVADESMY--GGGVDGGGRVAAVVVDGDRREGNSYGFSMIY 100

Query: 61  TLLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMR 102
           +LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLM S+  R
Sbjct: 101 SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMQSNLWR 144

BLAST of Csor.00g279510 vs. ExPASy TrEMBL
Match: A0A6J1ER34 (uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC111437033 PE=4 SV=1)

HSP 1 Score: 178 bits (452), Expect = 4.04e-56
Identity = 90/108 (83.33%), Postives = 96/108 (88.89%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVIDGNRR-DGNSYGFSMIYTLL 60
           MWRLAAAVR  LHNIRKSPRVADESM+S GGG DGGGRV+DG RR + NS+G S+IY +L
Sbjct: 1   MWRLAAAVRSKLHNIRKSPRVADESMFS-GGGVDGGGRVVDGGRRRERNSHGVSIIYNVL 60

Query: 61  RTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107
           RTPFS LSCFS PHVNGVDGMWVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  RTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMVSDSMRYAILM 107

BLAST of Csor.00g279510 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 110.5 bits (275), Expect = 8.2e-25
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVIDGNRRDGNSYGFSMIYTLLR 60
           M ++ + +RRNL N+RKSPRVAD++   +     G G V +G R   NS        ++R
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDGFNS-------VIMR 60

Query: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
            PFS++SCF+ P V+G DG+WVSG++  ISEVNHLMVSDSMRYAILM
Sbjct: 61  FPFSIISCFAVPRVSGTDGLWVSGDYGSISEVNHLMVSDSMRYAILM 100

BLAST of Csor.00g279510 vs. TAIR 10
Match: AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.1 bits (240), Expect = 9.4e-21
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADES-MYSAGGGADGGGRVIDGNRRDGNSYGFSMIYTLL 60
           M ++ + +RRNL N+RKSPRVADES + S     D GG    GN  +G          ++
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADESALPSTTVNGDHGG----GNGSNGG---------IM 60

Query: 61  RTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           + P S++SCFS P V+  DG+WVSG++ R+SEVNHLMV D MRYA+LM
Sbjct: 61  KFPLSIMSCFSVPRVSRADGVWVSGDYGRVSEVNHLMVCDGMRYALLM 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6572248.12.79e-72100.00hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022969305.17.72e-7097.20uncharacterized protein LOC111468352 [Cucurbita maxima][more]
XP_023554647.11.28e-6896.26uncharacterized protein LOC111811837 [Cucurbita pepo subsp. pepo][more]
XP_038888385.15.68e-6488.39uncharacterized protein LOC120078235 [Benincasa hispida][more]
XP_031744820.17.10e-6490.00uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetica... [more]
Match NameE-valueIdentityDescription
A0A6J1HZK33.74e-7097.20uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352... [more]
A0A5D3BTM85.05e-6489.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1C6U01.66e-5783.18uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A1S3C1342.00e-5684.91uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=... [more]
A0A6J1ER344.04e-5683.33uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC1114370... [more]
Match NameE-valueIdentityDescription
AT5G35732.18.2e-2552.34unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G04795.19.4e-2149.07unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR48165BNAC03G44900D PROTEINcoord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g279510.m01Csor.00g279510.m01mRNA