Csor.00g278920 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g278920
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCsor_Chr19: 9887814 .. 9888762 (-)
RNA-Seq ExpressionCsor.00g278920
SyntenyCsor.00g278920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTCTTAGCAACTACTCCGTCGTCGACGATTCTCAGTCCGCCGTACACGTTACTGGGCTCCGGCGGGAAAGTATCCTATCTGCGACTAGGCAGGGTGGAGGGATATCGGCGAGTGACAATGAGAGGCGGAAGTGAAAACCGGAAGCCGTTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTACAGTCGTTGAAGCGAGCTAAGAAAGATTTACAACAATTGGACCGAGTGTATGATTCTAAAATTAGACGCTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTGATGCCTCTGCACTCGACTTCTATGTTTATTTGTACATTTGAATGATTAGTAATCGGGAATATTCGATCATGCACGGTAGTTGTCGATCTTTAGAGGTATCCACAGCAATGGCGAGATATAGATTTGTGTCTTCTGTAATTCGTTCGATATTCTTTGCTGATAGCCTGTATTACTACTTTCCATTTCTGAGTGTTAGGTTTTTGAAGATGTTAGAAAGGAGGACTGGTACAAGCCTCAGGTTTCGCTGTATGCTGATATTGTTTCAGTATTGGCTAGCAATGGATTGTTCGAACAAGTACAAATAATTCATTCGTACTTCAAAGCAGAAACTGACCTAGCACCTGAAATTGAGGGGTTCAACAATCTTCTGAAGGCTTTGGTTACTTATAATCTAGGTGACCTTGCAATGGAGTCGTATTACTTAATGAAAGAAGTAGGTTGTGAGCCAGATAAGACTTCTTTCAGGATTGTCATAAAAGGATTGGAATCAACGAGAGAATCAGTTGATTTAAGAACTGTGAAGAAGGATGCACAAGAGCTTTATGGTGAATCACTTGAGTTTCTAGAGGAAGAAGATGAAGCAGCTACCGGCATATCGATGCACTGA

mRNA sequence

ATGAGTTTCTTAGCAACTACTCCGTCGTCGACGATTCTCAGTCCGCCGTACACGTTACTGGGCTCCGGCGGGAAAGTATCCTATCTGCGACTAGGCAGGGTGGAGGGATATCGGCGAGTGACAATGAGAGGCGGAAGTGAAAACCGGAAGCCGTTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTACAGTCGTTGAAGCGAGCTAAGAAAGATTTACAACAATTGGACCGAGTGTATGATTCTAAAATTAGACGCTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTTTTTGAAGATGTTAGAAAGGAGGACTGGTACAAGCCTCAGGTTTCGCTGTATGCTGATATTGTTTCAGTATTGGCTAGCAATGGATTGTTCGAACAAGTACAAATAATTCATTCGTACTTCAAAGCAGAAACTGACCTAGCACCTGAAATTGAGGGGTTCAACAATCTTCTGAAGGCTTTGGTTACTTATAATCTAGGTGACCTTGCAATGGAGTCGTATTACTTAATGAAAGAAGTAGGTTGTGAGCCAGATAAGACTTCTTTCAGGATTGTCATAAAAGGATTGGAATCAACGAGAGAATCAGTTGATTTAAGAACTGTGAAGAAGGATGCACAAGAGCTTTATGGTGAATCACTTGAGTTTCTAGAGGAAGAAGATGAAGCAGCTACCGGCATATCGATGCACTGA

Coding sequence (CDS)

ATGAGTTTCTTAGCAACTACTCCGTCGTCGACGATTCTCAGTCCGCCGTACACGTTACTGGGCTCCGGCGGGAAAGTATCCTATCTGCGACTAGGCAGGGTGGAGGGATATCGGCGAGTGACAATGAGAGGCGGAAGTGAAAACCGGAAGCCGTTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTACAGTCGTTGAAGCGAGCTAAGAAAGATTTACAACAATTGGACCGAGTGTATGATTCTAAAATTAGACGCTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTTTTTGAAGATGTTAGAAAGGAGGACTGGTACAAGCCTCAGGTTTCGCTGTATGCTGATATTGTTTCAGTATTGGCTAGCAATGGATTGTTCGAACAAGTACAAATAATTCATTCGTACTTCAAAGCAGAAACTGACCTAGCACCTGAAATTGAGGGGTTCAACAATCTTCTGAAGGCTTTGGTTACTTATAATCTAGGTGACCTTGCAATGGAGTCGTATTACTTAATGAAAGAAGTAGGTTGTGAGCCAGATAAGACTTCTTTCAGGATTGTCATAAAAGGATTGGAATCAACGAGAGAATCAGTTGATTTAAGAACTGTGAAGAAGGATGCACAAGAGCTTTATGGTGAATCACTTGAGTTTCTAGAGGAAGAAGATGAAGCAGCTACCGGCATATCGATGCACTGA

Protein sequence

MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRKEDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLGDLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEEDEAATGISMH
Homology
[Close]
BLAST of Csor.00g278920 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.8e-20
Identity = 62/184 (33.70%), Postives = 106/184 (57.61%), Query Frame = 0 

Query: 49  RKPLQKGRNL-SIEAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNE 108
           R PL +G+ L   EA+  +  LKR K+D ++LD+   + + RLLK DM+AV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 109 CSLALKVFEDVRKEDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGF 168
            +LA+K+FE ++K++WY+P V +Y D++  LA +   ++   +    K E +L P+ + +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE-NLFPDSQTY 182

Query: 169 NNLLKALVTYNLGDLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQE 228
             +++  +       AM  Y  M +    P++  FR+++KGL      +    VKKD +E
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL--LPHPLLRNKVKKDFEE 242

Query: 229 LYGE 232
           L+ E
Sbjct: 243 LFPE 243

[Close]
BLAST of Csor.00g278920 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-16
Identity = 60/183 (32.79%), Postives = 96/183 (52.46%), Query Frame = 0 

Query: 58  LSIEAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFED 117
           +S E + A + LKR +    +LDR   S + RLLK D+++VL E  RQN+  L +K++E 
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 118 VRKEDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTY 177
           VR+E WY+P +  Y D++ +LA N   ++ + +    K E  L  +   F +L++  +  
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVRGFLDN 120

Query: 178 NLGDLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLE 237
            L   AM  Y  M+E    P    FR+++KGL    E  +   VK D  EL+   + +  
Sbjct: 121 ELPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELRE--KVKDDFLELFPGMIVYDP 180

Query: 238 EED 241
            ED
Sbjct: 181 PED 180

[Close]
BLAST of Csor.00g278920 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.2e-16
Identity = 65/172 (37.79%), Postives = 95/172 (55.23%), Query Frame = 0 

Query: 44  GGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELL 103
           G  +NR PL KGR LS EAIQ++QSLKRA +    L       +RRL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTL-RPLRRLIKSDLISVLRELL 93

Query: 104 RQNECSLALKVFEDVRKEDWYKP-QVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAP 163
           RQ+ C+LA+ V   +R E  Y P  + LYADIV+ L  N  F+++  +        D   
Sbjct: 94  RQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDG-IDQRS 153

Query: 164 EIEGFNNLLKALVTYNLGDLAMESYYLMKEVG-----CEPDKTSFRIVIKGL 210
           + +    L++A+V     +  +  Y LM+E G      E D+    ++ KGL
Sbjct: 154 DDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGL 201

[Close]
BLAST of Csor.00g278920 vs. ExPASy Swiss-Prot
Match: Q9SCP4 (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-06
Identity = 32/113 (28.32%), Postives = 57/113 (50.44%), Query Frame = 0 

Query: 95  MMAVLRELLRQNECSLALKVFEDVRKEDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYF 154
           ++  L E +++N    ALK+F  +RK+ WY+P+   Y  +  VL +    +Q  ++    
Sbjct: 61  VLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVM 120

Query: 155 KAETDLAPEIEGFNNLLKALVTYNLGDLAMESYYLMKEVG-CEPDKTSFRIVI 207
            +E  L P I+ + +L+       L D A  +   MK V  C+PD  +F ++I
Sbjct: 121 LSE-GLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLI 172

[Close]
BLAST of Csor.00g278920 vs. ExPASy Swiss-Prot
Match: O82178 (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX=3702 GN=At2g35130 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.9e-05
Identity = 30/97 (30.93%), Postives = 50/97 (51.55%), Query Frame = 0 

Query: 125 KPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLGDLAM 184
           KP +  Y  +V+  A  GL E+ + I    + E  L P++  +N L+++         A 
Sbjct: 296 KPNICTYTALVNAFAREGLCEKAEEIFEQLQ-EDGLEPDVYVYNALMESYSRAGYPYGAA 355

Query: 185 ESYYLMKEVGCEPDKTSFRIVI-----KGLESTRESV 217
           E + LM+ +GCEPD+ S+ I++      GL S  E+V
Sbjct: 356 EIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAV 391

[Close]
BLAST of Csor.00g278920 vs. NCBI nr
Match: KAG6572189.1 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 476 bits (1225), Expect = 5.13e-169
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0 

Query: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG 180
           EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG 180

Query: 181 DLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240
           DLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED
Sbjct: 181 DLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 241 EAATGISMH 249
           EAATGISMH
Sbjct: 241 EAATGISMH 249

[Close]
BLAST of Csor.00g278920 vs. NCBI nr
Match: KAG7011830.1 (Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 472 bits (1215), Expect = 1.72e-167
Identity = 247/249 (99.20%), Postives = 248/249 (99.60%), Query Frame = 0 

Query: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG 180
           EDWYKPQV LYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG
Sbjct: 121 EDWYKPQVLLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG 180

Query: 181 DLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240
           +LAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED
Sbjct: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 241 EAATGISMH 249
           EAATGISMH
Sbjct: 241 EAATGISMH 249

[Close]
BLAST of Csor.00g278920 vs. NCBI nr
Match: XP_022952712.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata])

HSP 1 Score: 471 bits (1211), Expect = 6.99e-167
Identity = 246/249 (98.80%), Postives = 248/249 (99.60%), Query Frame = 0 

Query: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG 180
           EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALV+YNLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 DLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240
           +LAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED
Sbjct: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 241 EAATGISMH 249
           EAATGIS H
Sbjct: 241 EAATGISTH 249

[Close]
BLAST of Csor.00g278920 vs. NCBI nr
Match: XP_022969229.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_022969230.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_022969231.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_022969232.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima])

HSP 1 Score: 464 bits (1194), Expect = 2.73e-164
Identity = 243/249 (97.59%), Postives = 245/249 (98.39%), Query Frame = 0 

Query: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG 180
           EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSY KAETDLAPEIEGFNNLLKALV+YNLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYLKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 DLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240
           +LAMESYYLMKEVGCEPDK SFRIVIKGLESTRESVDLR VKKDAQELYGESLEFLEEED
Sbjct: 181 ELAMESYYLMKEVGCEPDKASFRIVIKGLESTRESVDLRPVKKDAQELYGESLEFLEEED 240

Query: 241 EAATGISMH 249
           EAATGIS H
Sbjct: 241 EAATGISTH 249

[Close]
BLAST of Csor.00g278920 vs. NCBI nr
Match: XP_023554588.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023554589.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023554590.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 457 bits (1175), Expect = 2.15e-161
Identity = 238/249 (95.58%), Postives = 243/249 (97.59%), Query Frame = 0 

Query: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFLATTPS TILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSPTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG 180
           EDWYKPQ+SLYADIVSVLASNGLFE VQIIHSY KAETDLAPEIEGFNNLLKALV+YNLG
Sbjct: 121 EDWYKPQISLYADIVSVLASNGLFEPVQIIHSYLKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 DLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240
           +LAMESYYLMK+VGCEPDKTSFRIVIKGLEST ESVDLRTVKKDAQELYGESLEFLEEED
Sbjct: 181 ELAMESYYLMKKVGCEPDKTSFRIVIKGLESTTESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 241 EAATGISMH 249
           + ATGIS H
Sbjct: 241 DPATGISTH 249

[Close]
BLAST of Csor.00g278920 vs. ExPASy TrEMBL
Match: A0A6J1GL50 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111455325 PE=4 SV=1)

HSP 1 Score: 471 bits (1211), Expect = 3.38e-167
Identity = 246/249 (98.80%), Postives = 248/249 (99.60%), Query Frame = 0 

Query: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG 180
           EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALV+YNLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 DLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240
           +LAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED
Sbjct: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 241 EAATGISMH 249
           EAATGIS H
Sbjct: 241 EAATGISTH 249

[Close]
BLAST of Csor.00g278920 vs. ExPASy TrEMBL
Match: A0A6J1HX85 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468293 PE=4 SV=1)

HSP 1 Score: 464 bits (1194), Expect = 1.32e-164
Identity = 243/249 (97.59%), Postives = 245/249 (98.39%), Query Frame = 0 

Query: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG 180
           EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSY KAETDLAPEIEGFNNLLKALV+YNLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYLKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 DLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240
           +LAMESYYLMKEVGCEPDK SFRIVIKGLESTRESVDLR VKKDAQELYGESLEFLEEED
Sbjct: 181 ELAMESYYLMKEVGCEPDKASFRIVIKGLESTRESVDLRPVKKDAQELYGESLEFLEEED 240

Query: 241 EAATGISMH 249
           EAATGIS H
Sbjct: 241 EAATGISTH 249

[Close]
BLAST of Csor.00g278920 vs. ExPASy TrEMBL
Match: A0A6J1C1T5 (pentatricopeptide repeat-containing protein At1g62350-like OS=Momordica charantia OX=3673 GN=LOC111007673 PE=4 SV=1)

HSP 1 Score: 388 bits (997), Expect = 1.42e-134
Identity = 207/249 (83.13%), Postives = 222/249 (89.16%), Query Frame = 0 

Query: 1   MSFLATTPS-STILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLS 60
           M+FLA  PS +TI S P+ LL SG K S LRLGR E YRRVTMRGGSENRKPLQKGRNLS
Sbjct: 1   MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS 60

Query: 61  IEAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVR 120
           IEAIQAVQSLKR K DLQQLDRVYDSKI RLLKFDMMAVLRELLRQNEC LALKVFEDVR
Sbjct: 61  IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALKVFEDVR 120

Query: 121 KEDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNL 180
            E WYKPQVSLYADI++VLASNGLFEQVQIIHSY K ETDLAPEI+GFN LL+ALV+YNL
Sbjct: 121 NEHWYKPQVSLYADIITVLASNGLFEQVQIIHSYLKVETDLAPEIDGFNALLRALVSYNL 180

Query: 181 GDLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEE 240
           G+LAMESYYLMK+VGCEPDKTSFRIVIKGLEST E+VDLR VK+DAQ++YG+ LEFLEEE
Sbjct: 181 GELAMESYYLMKKVGCEPDKTSFRIVIKGLESTVEAVDLRIVKQDAQKIYGDLLEFLEEE 240

Query: 241 DEAATGISM 248
           DEAA   SM
Sbjct: 241 DEAAIATSM 249

[Close]
BLAST of Csor.00g278920 vs. ExPASy TrEMBL
Match: A0A5A7UZI6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00170 PE=4 SV=1)

HSP 1 Score: 386 bits (992), Expect = 7.90e-134
Identity = 207/249 (83.13%), Postives = 220/249 (88.35%), Query Frame = 0 

Query: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFL T PS TILSPP  L  S  K   L+LGR EGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKR KKDLQQLDRVYDSKIRRLLKFDM+AVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG 180
           E WYKPQVSLYADI++VLASNGLFE+VQII SY KAETDLAPEI+GFN LLKALV +NLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLG 180

Query: 181 DLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240
            LAMESYYLMKEVGCEP+K SFRIVIKGLE   E+VDLRTVK+DAQ+LYGESLEFLEE +
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 EAATGISMH 249
           E AT IS+H
Sbjct: 241 EGATAISIH 249

[Close]
BLAST of Csor.00g278920 vs. ExPASy TrEMBL
Match: A0A1S3BRZ8 (pentatricopeptide repeat-containing protein At3g46870-like OS=Cucumis melo OX=3656 GN=LOC103492562 PE=4 SV=1)

HSP 1 Score: 386 bits (992), Expect = 7.90e-134
Identity = 207/249 (83.13%), Postives = 220/249 (88.35%), Query Frame = 0 

Query: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFL T PS TILSPP  L  S  K   L+LGR EGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKR KKDLQQLDRVYDSKIRRLLKFDM+AVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG 180
           E WYKPQVSLYADI++VLASNGLFE+VQII SY KAETDLAPEI+GFN LLKALV +NLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLG 180

Query: 181 DLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240
            LAMESYYLMKEVGCEP+K SFRIVIKGLE   E+VDLRTVK+DAQ+LYGESLEFLEE +
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 EAATGISMH 249
           E AT IS+H
Sbjct: 241 EGATAISIH 249

[Close]
BLAST of Csor.00g278920 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 230.7 bits (587), Expect = 1.3e-60
Identity = 128/243 (52.67%), Postives = 165/243 (67.90%), Query Frame = 0 

Query: 21  GSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDLQQ-- 80
           G+GG++  L+   V     + MR  S+NRKPLQ+GR LSIEAIQAVQ+LKRA   L    
Sbjct: 473 GTGGRIQILQRAMV-----IKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPP 532

Query: 81  -------------LDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRKEDWYK 140
                        LDRV  SK RRLLKFDM+AVLRELLRQNECSLALKVFE++RKE WYK
Sbjct: 533 VPSTSTTSSSSALLDRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYK 592

Query: 141 PQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLGDLAME 200
           PQV +Y D+++V+A N L E+V  ++S  K+E  L  EIE FN LL  L+ + L DL M+
Sbjct: 593 PQVRMYTDMITVMADNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMD 652

Query: 201 SYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEEDEAATG 249
            Y  M+ +G EPD+ SFR+++ GLES  E      V++DA E YGESLEF+EE++E ++G
Sbjct: 653 CYAFMQSIGYEPDRASFRVLVLGLESNGEMGLSAIVRQDAHEYYGESLEFIEEDEEISSG 710

[Close]
BLAST of Csor.00g278920 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-21
Identity = 62/184 (33.70%), Postives = 106/184 (57.61%), Query Frame = 0 

Query: 49  RKPLQKGRNL-SIEAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNE 108
           R PL +G+ L   EA+  +  LKR K+D ++LD+   + + RLLK DM+AV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 109 CSLALKVFEDVRKEDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGF 168
            +LA+K+FE ++K++WY+P V +Y D++  LA +   ++   +    K E +L P+ + +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE-NLFPDSQTY 182

Query: 169 NNLLKALVTYNLGDLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQE 228
             +++  +       AM  Y  M +    P++  FR+++KGL      +    VKKD +E
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL--LPHPLLRNKVKKDFEE 242

Query: 229 LYGE 232
           L+ E
Sbjct: 243 LFPE 243

[Close]
BLAST of Csor.00g278920 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-17
Identity = 60/183 (32.79%), Postives = 96/183 (52.46%), Query Frame = 0 

Query: 58  LSIEAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFED 117
           +S E + A + LKR +    +LDR   S + RLLK D+++VL E  RQN+  L +K++E 
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 118 VRKEDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTY 177
           VR+E WY+P +  Y D++ +LA N   ++ + +    K E  L  +   F +L++  +  
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVRGFLDN 120

Query: 178 NLGDLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLE 237
            L   AM  Y  M+E    P    FR+++KGL    E  +   VK D  EL+   + +  
Sbjct: 121 ELPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELRE--KVKDDFLELFPGMIVYDP 180

Query: 238 EED 241
            ED
Sbjct: 181 PED 180

[Close]
BLAST of Csor.00g278920 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-17
Identity = 65/172 (37.79%), Postives = 95/172 (55.23%), Query Frame = 0 

Query: 44  GGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELL 103
           G  +NR PL KGR LS EAIQ++QSLKRA +    L       +RRL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTL-RPLRRLIKSDLISVLRELL 93

Query: 104 RQNECSLALKVFEDVRKEDWYKP-QVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAP 163
           RQ+ C+LA+ V   +R E  Y P  + LYADIV+ L  N  F+++  +        D   
Sbjct: 94  RQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDG-IDQRS 153

Query: 164 EIEGFNNLLKALVTYNLGDLAMESYYLMKEVG-----CEPDKTSFRIVIKGL 210
           + +    L++A+V     +  +  Y LM+E G      E D+    ++ KGL
Sbjct: 154 DDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGL 201

[Close]
BLAST of Csor.00g278920 vs. TAIR 10
Match: AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 7.3e-08
Identity = 32/113 (28.32%), Postives = 57/113 (50.44%), Query Frame = 0 

Query: 95  MMAVLRELLRQNECSLALKVFEDVRKEDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYF 154
           ++  L E +++N    ALK+F  +RK+ WY+P+   Y  +  VL +    +Q  ++    
Sbjct: 111 VLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVM 170

Query: 155 KAETDLAPEIEGFNNLLKALVTYNLGDLAMESYYLMKEVG-CEPDKTSFRIVI 207
            +E  L P I+ + +L+       L D A  +   MK V  C+PD  +F ++I
Sbjct: 171 LSE-GLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLI 222

The following BLAST results are available for this feature:
BLAST of Csor.00g278920 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STF92.8e-2033.70Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Q1PFH73.2e-1632.79Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX... [more]
Q9LVW64.2e-1637.79Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T... [more]
Q9SCP41.0e-0628.32Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX... [more]
O821781.9e-0530.93Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX... [more]
BLAST of Csor.00g278920 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6572189.15.13e-169100.00Protein THYLAKOID ASSEMBLY 8-like, chloroplastic, partial [Cucurbita argyrosperm... [more]
KAG7011830.11.72e-16799.20Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyr... [more]
XP_022952712.16.99e-16798.80protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata][more]
XP_022969229.12.73e-16497.59protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_02296923... [more]
XP_023554588.12.15e-16195.58protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >X... [more]
BLAST of Csor.00g278920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GL503.38e-16798.80protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1HX851.32e-16497.59protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1C1T51.42e-13483.13pentatricopeptide repeat-containing protein At1g62350-like OS=Momordica charanti... [more]
A0A5A7UZI67.90e-13483.13Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BRZ87.90e-13483.13pentatricopeptide repeat-containing protein At3g46870-like OS=Cucumis melo OX=36... [more]
BLAST of Csor.00g278920 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G09320.11.3e-6052.67Vacuolar sorting protein 9 (VPS9) domain [more]
AT3G46870.12.0e-2133.70Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G62350.12.3e-1732.79Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G27750.13.0e-1737.79FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT3G53170.17.3e-0828.32Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 69..89
NoneNo IPR availablePANTHERPTHR47594:SF4THYLAKOID ASSEMBLY8coord: 27..242
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 164..209
e-value: 3.5E-7
score: 30.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 57..229
e-value: 4.3E-42
score: 145.8
IPR044190Protein THYLAKOID ASSEMBLY 8-likePANTHERPTHR47594PPR CONTAINING PLANT-LIKE PROTEINcoord: 27..242

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g278920.m01Csor.00g278920.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0000373 Group II intron splicing
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding