Csor.00g278290 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g278290
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionprotein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like
LocationCsor_Chr19: 9505026 .. 9506206 (-)
RNA-Seq ExpressionCsor.00g278290
SyntenyCsor.00g278290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGCCGCTCTTTCCGTCCGCCTCAACCGTCTTTCCGCCGGCGCAGCCTCTCCGACATCACCGGGTCACCGGCTCGGTTCGAACTTCATCGGAAAATTGAATCAATGGAAAGGCGTTGGCATTTCACAAATCTTTCGAACATTTGCGATGAGGGGAATGCTGGTGCAAGCTGGTTCGTGAGCCGATGACTCTGCGCCGTTCGAGATATCCGTGGAAAATGCTCTCGATGTTCTTGGAGTCTCCGATGAGGCCTCGTTCGGTGATATTCTTCGTGCTAGGAAGTCGATTATGGCCGCTTGCAAGGACGACCAAGAAACAGTCGCGCAGGTAGAAGGAGTTCGATTTTTTTACTTCGTTTGGGGAATTTTGGTATTTTAGGGATTTAAATATTGCGTTCCCTTTGATTTGAGTATTGGCATTCGGAATTGGGAAGTCCGATTGATTTGGTAATTATTCGTGTGATCTTTGTGTATGTGTGTATGTGTGTGTGTGCGTGTGTGAGTTTCTTTATGTTACTAATATGATCGGCATGGAGCTTGCGAACTTTTTGAGTGAGTTAAGCTTTCCTTTTGTTTTGCCAACACTCTTTAGAATGGCTATTATCACTTTAGCAACGATCTTTTGAGTTTCCTACTCCGGCGGCAATTAGATTCGAACATTTCATTCAGATCCTTGCTACTACATGAGGAGGCAGTTATGATTTTGAACGAAATACCGTACATGGATTATTAGATTTATTTGCATGTAGCTTTGTAGCTTCTTTGTATTTTTTTGACCAAAAGGAACGTGAAGCTTGGTAAGGAGTTCTGCTAGTGCTAATTCTTTGTGCTTTTTAGTTCTTACAAGATTTGGATATAAGTAAATCTTCACAAATTTGGAGAACAATTGAAGAAATCGTTCAGTTTTTCTGCTTGCGAATACTGTTGAGGTTTTGGGAAATAAACTTGATGCTTGCGAATACTGGGTCTATTTCCTTTCGAATCAAAATTTATTTTTTATGCTACATGTGATATTTATTTATCCTATTTGTATTACATATATTCATGAACTTTGACATAAATGAAGTGATTTCGTTTCTTGTGCACAAAAGTATGCTGAGAAATACAGATCTGATCGTGCAATTTTCATATGAGAATATTTGCAATTAGCTCTGCTGTTCTTCCTTGCAGGTGCAGTAG

mRNA sequence

ATGACGGCCGCTCTTTCCGTCCGCCTCAACCGTCTTTCCGCCGGCGCAGCCTCTCCGACATCACCGGGTCACCGGCTCGGTTCGAACTTCATCGGAAAATTGAATCAATGGAAAGGCGTTGGCATTTCACAAATCTTTCGAACATTTGCGATGAGGGGAATGCTGGTGCAAGCTGGTTCGAAGTCGATTATGGCCGCTTGCAAGGACGACCAAGAAACAGTCGCGCAGGTGCAGTAG

Coding sequence (CDS)

ATGACGGCCGCTCTTTCCGTCCGCCTCAACCGTCTTTCCGCCGGCGCAGCCTCTCCGACATCACCGGGTCACCGGCTCGGTTCGAACTTCATCGGAAAATTGAATCAATGGAAAGGCGTTGGCATTTCACAAATCTTTCGAACATTTGCGATGAGGGGAATGCTGGTGCAAGCTGGTTCGAAGTCGATTATGGCCGCTTGCAAGGACGACCAAGAAACAGTCGCGCAGGTGCAGTAG

Protein sequence

MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFAMRGMLVQAGSKSIMAACKDDQETVAQVQ
Homology
[Close]
BLAST of Csor.00g278290 vs. NCBI nr
Match: KAG6572126.1 (hypothetical protein SDJN03_28854, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151 bits (381), Expect = 7.05e-46
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFAMRGMLVQAGS 60
          MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFAMRGMLVQAGS
Sbjct: 1  MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFAMRGMLVQAGS 60

Query: 61 KSIMAACKDDQETVAQVQ 78
          KSIMAACKDDQETVAQVQ
Sbjct: 61 KSIMAACKDDQETVAQVQ 78

[Close]
BLAST of Csor.00g278290 vs. NCBI nr
Match: XP_022135964.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 2.33e-16
Identity = 54/112 (48.21%), Postives = 59/112 (52.68%), Query Frame = 0 

Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFAMRGMLVQAGS 60
           M A LSVR N  S GAA PT P HR GSNFIGKL+ WK VGIS I RT AM    VQAGS
Sbjct: 1   MAATLSVRPNGFSGGAAFPTPPAHRPGSNFIGKLSLWKRVGISHISRTPAMPATPVQAGS 60

Query: 61  K----------------------------------SIMAACKDDQETVAQVQ 78
           +                                  SI+AACKDD+ETVAQV+
Sbjct: 61  RADDSAPFEMSVENALKVLGVSEEASFDDILRARNSILAACKDDEETVAQVE 112

[Close]
BLAST of Csor.00g278290 vs. NCBI nr
Match: XP_038887421.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 81.3 bits (199), Expect = 3.25e-16
Identity = 54/112 (48.21%), Postives = 58/112 (51.79%), Query Frame = 0 

Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFAMRGMLVQAGS 60
           M A LSVR N LS GAA PT P HRL SNFIGKL+ WKGV ISQ  RT  M    VQAGS
Sbjct: 1   MAATLSVRPNNLSGGAAFPTPPCHRLRSNFIGKLSLWKGVSISQTSRTPTMTATPVQAGS 60

Query: 61  K----------------------------------SIMAACKDDQETVAQVQ 78
           +                                  SI+AAC DDQETVAQV+
Sbjct: 61  RADDSAPFEMSVENALKVLGVSDAASFDDILRARNSILAACNDDQETVAQVE 112

[Close]
BLAST of Csor.00g278290 vs. NCBI nr
Match: KAA0025127.1 (protein CHAPERONE-LIKE PROTEIN OF POR1 [Cucumis melo var. makuwa] >TYK19369.1 protein CHAPERONE-LIKE PROTEIN OF POR1 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 3.38e-14
Identity = 49/112 (43.75%), Postives = 58/112 (51.79%), Query Frame = 0 

Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFAMRGMLVQAGS 60
           M A LSVR N LS GAA PT P HRL S F+GK    KGV ISQ+F+T AM   LVQAGS
Sbjct: 1   MAATLSVRPNPLSGGAAFPTLPAHRLVSTFLGKFTPLKGVSISQVFQTPAMTATLVQAGS 60

Query: 61  K----------------------------------SIMAACKDDQETVAQVQ 78
           +                                  SI+A CKD++ETVAQ++
Sbjct: 61  RADDSTPFEMSVDNALKVLGVSDAASFDDILRARNSILADCKDEEETVAQIE 112

[Close]
BLAST of Csor.00g278290 vs. NCBI nr
Match: XP_008447928.1 (PREDICTED: protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 6.58e-14
Identity = 49/112 (43.75%), Postives = 58/112 (51.79%), Query Frame = 0 

Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFAMRGMLVQAGS 60
           M A LSVR N LS GAA PT P HRL S F+GK    KGV ISQ+F+T AM   LVQAGS
Sbjct: 1   MAATLSVRPNPLSGGAAFPTLPAHRLVSTFLGKFTPLKGVSISQVFQTPAMTATLVQAGS 60

Query: 61  K----------------------------------SIMAACKDDQETVAQVQ 78
           +                                  SI+A CKD++ETVAQ++
Sbjct: 61  RADDSTPFEMSVDNALKVLGVSDAASFDDILRARNSILADCKDEEETVAQIE 112

[Close]
BLAST of Csor.00g278290 vs. ExPASy TrEMBL
Match: A0A6J1C2Y7 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111007789 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.13e-16
Identity = 54/112 (48.21%), Postives = 59/112 (52.68%), Query Frame = 0 

Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFAMRGMLVQAGS 60
           M A LSVR N  S GAA PT P HR GSNFIGKL+ WK VGIS I RT AM    VQAGS
Sbjct: 1   MAATLSVRPNGFSGGAAFPTPPAHRPGSNFIGKLSLWKRVGISHISRTPAMPATPVQAGS 60

Query: 61  K----------------------------------SIMAACKDDQETVAQVQ 78
           +                                  SI+AACKDD+ETVAQV+
Sbjct: 61  RADDSAPFEMSVENALKVLGVSEEASFDDILRARNSILAACKDDEETVAQVE 112

[Close]
BLAST of Csor.00g278290 vs. ExPASy TrEMBL
Match: A0A5D3D731 (Protein CHAPERONE-LIKE PROTEIN OF POR1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3037G00230 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.64e-14
Identity = 49/112 (43.75%), Postives = 58/112 (51.79%), Query Frame = 0 

Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFAMRGMLVQAGS 60
           M A LSVR N LS GAA PT P HRL S F+GK    KGV ISQ+F+T AM   LVQAGS
Sbjct: 1   MAATLSVRPNPLSGGAAFPTLPAHRLVSTFLGKFTPLKGVSISQVFQTPAMTATLVQAGS 60

Query: 61  K----------------------------------SIMAACKDDQETVAQVQ 78
           +                                  SI+A CKD++ETVAQ++
Sbjct: 61  RADDSTPFEMSVDNALKVLGVSDAASFDDILRARNSILADCKDEEETVAQIE 112

[Close]
BLAST of Csor.00g278290 vs. ExPASy TrEMBL
Match: A0A1S3BIJ0 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490266 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.19e-14
Identity = 49/112 (43.75%), Postives = 58/112 (51.79%), Query Frame = 0 

Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFAMRGMLVQAGS 60
           M A LSVR N LS GAA PT P HRL S F+GK    KGV ISQ+F+T AM   LVQAGS
Sbjct: 1   MAATLSVRPNPLSGGAAFPTLPAHRLVSTFLGKFTPLKGVSISQVFQTPAMTATLVQAGS 60

Query: 61  K----------------------------------SIMAACKDDQETVAQVQ 78
           +                                  SI+A CKD++ETVAQ++
Sbjct: 61  RADDSTPFEMSVDNALKVLGVSDAASFDDILRARNSILADCKDEEETVAQIE 112

[Close]
BLAST of Csor.00g278290 vs. ExPASy TrEMBL
Match: A0A1S4DWV9 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490266 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.42e-13
Identity = 49/110 (44.55%), Postives = 56/110 (50.91%), Query Frame = 0 

Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFAMRGMLVQAGS 60
           M A LSVR N LS GAA PT P HRL S F+GK    KGV ISQ+F+T AM   LVQAGS
Sbjct: 1   MAATLSVRPNPLSGGAAFPTLPAHRLVSTFLGKFTPLKGVSISQVFQTPAMTATLVQAGS 60

Query: 61  K----------------------------------SIMAACKDDQETVAQ 76
           +                                  SI+A CKD++ETVAQ
Sbjct: 61  RADDSTPFEMSVDNALKVLGVSDAASFDDILRARNSILADCKDEEETVAQ 110

[Close]
BLAST of Csor.00g278290 vs. ExPASy TrEMBL
Match: A0A0A0K609 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014570 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.08e-09
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 6  SVRLNRLSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFAMRGMLVQAGSKS 62
          SVR N LS GAA  T P H LGS+F+GKL   +GV IS IF+T AM   LVQAGS++
Sbjct: 18 SVRPNPLSGGAAFSTPPAHCLGSSFLGKLTPCEGVSISHIFQTPAMTATLVQAGSRA 74

The following BLAST results are available for this feature:
BLAST of Csor.00g278290 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g278290 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6572126.17.05e-46100.00hypothetical protein SDJN03_28854, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022135964.12.33e-1648.21protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Momordica charantia][more]
XP_038887421.13.25e-1648.21protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Benincasa hispida][more]
KAA0025127.13.38e-1443.75protein CHAPERONE-LIKE PROTEIN OF POR1 [Cucumis melo var. makuwa] >TYK19369.1 pr... [more]
XP_008447928.16.58e-1443.75PREDICTED: protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X1... [more]
BLAST of Csor.00g278290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C2Y71.13e-1648.21protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like OS=Momordica charanti... [more]
A0A5D3D7311.64e-1443.75Protein CHAPERONE-LIKE PROTEIN OF POR1 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S3BIJ03.19e-1443.75protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X1 OS=Cucumis... [more]
A0A1S4DWV91.42e-1344.55protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X2 OS=Cucumis... [more]
A0A0A0K6092.08e-0959.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014570 PE=4 SV=1[more]
BLAST of Csor.00g278290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g278290.m01Csor.00g278290.m01mRNA