Csor.00g276590 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g276590
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr03: 1500137 .. 1500463 (+)
RNA-Seq Expression	Csor.00g276590
Synteny	Csor.00g276590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCAAAGACACACCAAAGGCCCCATATGCAAAGCAGCAACCACCAAGTATAGGAGGAAGATAGACCCTTATTCCCTAAGTGCGGAAGGATACATAAGGGAGAATGCTTGGCAGGAACTAATGTGTGCTTCAATTGTGGAGCAGAGGGCCATAGGAGTCTCGAATGTCCAAAAAAGGAGGAACGGGGTGACTAACCCAAATAACCAAGGAAAAGTTCAGAATCAAGGGCAGAACAAGTGGGGCCAGGGGGCACCGCGTAAAAGGTATGGATGTACTATGGCTAAACCAACATTCTCGACCAAACAAAAACAAGTACGCCTTTAA

mRNA sequence

ATGCTCCAAAGACACACCAAAGGCCCCATATGCAAAGCAGCAACCACCAAGTATAGGAGGAAGATAGACCCTTATTCCCTAAGTGCGGAAGGATACATAAGGGAGAATGCTTGGCAGGAACTAATGTGTGCTTCAATTGTGGAGCAGAGGGCCATAGGAGTCTCGAATGTCCAAAAAAGGAGGAACGGGGTGACTAACCCAAATAACCAAGGAAAAGTTCAGAATCAAGGGCAGAACAAGTGGGGCCAGGGGGCACCGCGTAAAAGGTATGGATGTACTATGGCTAAACCAACATTCTCGACCAAACAAAAACAAGTACGCCTTTAA

Coding sequence (CDS)

ATGCTCCAAAGACACACCAAAGGCCCCATATGCAAAGCAGCAACCACCAAGTATAGGAGGAAGATAGACCCTTATTCCCTAAGTGCGGAAGGATACATAAGGGAGAATGCTTGGCAGGAACTAATGTGTGCTTCAATTGTGGAGCAGAGGGCCATAGGAGTCTCGAATGTCCAAAAAAGGAGGAACGGGGTGACTAACCCAAATAACCAAGGAAAAGTTCAGAATCAAGGGCAGAACAAGTGGGGCCAGGGGGCACCGCGTAAAAGGTATGGATGTACTATGGCTAAACCAACATTCTCGACCAAACAAAAACAAGTACGCCTTTAA

Protein sequence

MLQRHTKGPICKAATTKYRRKIDPYSLSAEGYIRENAWQELMCASIVEQRAIGVSNVQKRRNGVTNPNNQGKVQNQGQNKWGQGAPRKRYGCTMAKPTFSTKQKQVRL

Homology

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BLAST of Csor.00g276590 vs. NCBI nr
Match: KAG6603289.1 (hypothetical protein SDJN03_03898, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218 bits (555), Expect = 1.74e-71
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MLQRHTKGPICKAATTKYRRKIDPYSLSAEGYIRENAWQELMCASIVEQRAIGVSNVQKR 60
           MLQRHTKGPICKAATTKYRRKIDPYSLSAEGYIRENAWQELMCASIVEQRAIGVSNVQKR
Sbjct: 1   MLQRHTKGPICKAATTKYRRKIDPYSLSAEGYIRENAWQELMCASIVEQRAIGVSNVQKR 60

Query: 61  RNGVTNPNNQGKVQNQGQNKWGQGAPRKRYGCTMAKPTFSTKQKQVRL 108
           RNGVTNPNNQGKVQNQGQNKWGQGAPRKRYGCTMAKPTFSTKQKQVRL
Sbjct: 61  RNGVTNPNNQGKVQNQGQNKWGQGAPRKRYGCTMAKPTFSTKQKQVRL 108

The following BLAST results are available for this feature:

BLAST of Csor.00g276590 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g276590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603289.1	1.74e-71	100.00	hypothetical protein SDJN03_03898, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g276590 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g276590 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g276590.m01	Csor.00g276590.m01	mRNA