Csor.00g275350 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g275350
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Arabinogalactan protein
Location	Csor_Chr15: 10081438 .. 10081775 (-)
RNA-Seq Expression	Csor.00g275350
Synteny	Csor.00g275350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTCGTTGCTAATAAGATCCCCTTTGGCGTCTTCATTGGTGTTGTTTTTGTTTTGGCTATGCTTCTCCCTGCTTGTGCTCAATCTCTGGCTCCGGCCCAACCTCCTGCTGCTAGCGATGGTTAGTTCTTCTTGTTCTTCTTCTTCTTCTTCTTTTCCTCATTTGAATCATGATTTTCAAGTTCTCCACCTATGAATTTCATAAATGATGAGAATTATTGTTATGCTAATTTGCAGGGACAAGCATAGACCAGGGGATTGCCTATGTACTGATGCTGTTGGCCTTGGTGCTCACTTACATTATCCATTCAGCCGACCTTTCTATCAGTTTCTAA

mRNA sequence

ATGGCGGTCGTTGCTAATAAGATCCCCTTTGGCGTCTTCATTGGTGTTGTTTTTGTTTTGGCTATGCTTCTCCCTGCTTGTGCTCAATCTCTGGCTCCGGCCCAACCTCCTGCTGCTAGCGATGGGACAAGCATAGACCAGGGGATTGCCTATGTACTGATGCTGTTGGCCTTGGTGCTCACTTACATTATCCATTCAGCCGACCTTTCTATCAGTTTCTAA

Coding sequence (CDS)

ATGGCGGTCGTTGCTAATAAGATCCCCTTTGGCGTCTTCATTGGTGTTGTTTTTGTTTTGGCTATGCTTCTCCCTGCTTGTGCTCAATCTCTGGCTCCGGCCCAACCTCCTGCTGCTAGCGATGGGACAAGCATAGACCAGGGGATTGCCTATGTACTGATGCTGTTGGCCTTGGTGCTCACTTACATTATCCATTCAGCCGACCTTTCTATCAGTTTCTAA

Protein sequence

MAVVANKIPFGVFIGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

Homology

[Close]

BLAST of Csor.00g275350 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-09
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 18 FVLAMLLP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF 74
          FV A++L  A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S S+
Sbjct: 15 FVFAVILSLAGAQSLAPA-PAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSY 70

[Close]

BLAST of Csor.00g275350 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-09
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 6  NKIPFGVFIGVVFVLAMLLP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYII 65
          +++ FGV   V  + A+LLP A AQS APA P   SDGT+IDQGIAYVLML+ALVLTY+I
Sbjct: 4  SRLFFGVSTIVSIIFAILLPMAHAQSAAPA-PAPTSDGTTIDQGIAYVLMLVALVLTYLI 63

[Close]

BLAST of Csor.00g275350 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.4e-09
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 4  VANKIPFGVFIGVVFVLAMLLP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTY 63
          +A++    V     FV A++ P A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY
Sbjct: 1  MASRNSVAVIALFAFVFAVISPFAGAQSLAPA-PSPTSDGTSIDQGIAYLLMVVALVLTY 60

Query: 64 IIHSADLSIS 73
          +IH  D S S
Sbjct: 61 LIHPLDASSS 69

[Close]

BLAST of Csor.00g275350 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-06
Identity = 29/59 (49.15%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 7  KIPFGVFIGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH 66
          K P  +    V +  +LLP      +   P   SDGTSIDQGIAYVLM++AL LTY IH
Sbjct: 5  KFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

[Close]

BLAST of Csor.00g275350 vs. NCBI nr
Match: KAG6579545.1 (Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132 bits (332), Expect = 1.49e-38
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MAVVANKIPFGVFIGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVL 60
          MAVVANKIPFGVFIGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVL
Sbjct: 1  MAVVANKIPFGVFIGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVL 60

Query: 61 TYIIHSADLSISF 73
          TYIIHSADLSISF
Sbjct: 61 TYIIHSADLSISF 73

[Close]

BLAST of Csor.00g275350 vs. NCBI nr
Match: KAG7017004.1 (Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130 bits (326), Expect = 1.23e-37
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MAVVANKIPFGVFIGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVL 60
          MAVVANKIPFGVF GVVFVLAM+LPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVL
Sbjct: 1  MAVVANKIPFGVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVL 60

Query: 61 TYIIHSADLSISF 73
          TYIIHSADLSISF
Sbjct: 61 TYIIHSADLSISF 73

[Close]

BLAST of Csor.00g275350 vs. NCBI nr
Match: XP_008437371.1 (PREDICTED: arabinogalactan peptide 22-like [Cucumis melo] >KAA0042697.1 arabinogalactan peptide 22-like [Cucumis melo var. makuwa] >TYK06101.1 arabinogalactan peptide 22-like [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 6.78e-24
Identity = 55/69 (79.71%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MAVVANKIPF-GVFIGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALV 60
          MAVVA KIPF G+   V  VL  L PACAQSL+PAQPPA SDGTSIDQGIAY LMLLALV
Sbjct: 1  MAVVACKIPFSGILFVVALVLTRLSPACAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60

Query: 61 LTYIIHSAD 68
          LTYIIHSAD
Sbjct: 61 LTYIIHSAD 69

[Close]

BLAST of Csor.00g275350 vs. NCBI nr
Match: XP_023532560.1 (arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.4 bits (228), Expect = 1.19e-22
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 6  NKIPFGVFIGVVFVLAMLLPACAQ--SLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYI 65
          NK+P+GV + V FVLAML PA A   SL+PAQPP ASDGTS+DQGIAYVLMLLAL+LTYI
Sbjct: 7  NKVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYI 66

Query: 66 IHSADLSIS 72
          IH A+L IS
Sbjct: 67 IHLAELPIS 75

[Close]

BLAST of Csor.00g275350 vs. NCBI nr
Match: XP_004143956.1 (arabinogalactan protein 41 [Cucumis sativus] >KGN50035.1 hypothetical protein Csa_000543 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 2.27e-22
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MAVVANKIPFGVFIGVVFVLAMLLP----ACAQSLAPAQPPAASDGTSIDQGIAYVLMLL 60
          MAVVA K+PFG   G++FV+A++L     A AQSL+PAQPPA  DGTSIDQGIAYVLMLL
Sbjct: 1  MAVVACKVPFG---GILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLL 60

Query: 61 ALVLTYIIHSADLSIS 72
          ALVLTYIIHSADL +S
Sbjct: 61 ALVLTYIIHSADLYVS 73

[Close]

BLAST of Csor.00g275350 vs. ExPASy TrEMBL
Match: A0A5D3C2F1 (Arabinogalactan peptide 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002020 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.28e-24
Identity = 55/69 (79.71%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MAVVANKIPF-GVFIGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALV 60
          MAVVA KIPF G+   V  VL  L PACAQSL+PAQPPA SDGTSIDQGIAY LMLLALV
Sbjct: 1  MAVVACKIPFSGILFVVALVLTRLSPACAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60

Query: 61 LTYIIHSAD 68
          LTYIIHSAD
Sbjct: 61 LTYIIHSAD 69

[Close]

BLAST of Csor.00g275350 vs. ExPASy TrEMBL
Match: A0A1S3ATI9 (arabinogalactan peptide 22-like OS=Cucumis melo OX=3656 GN=LOC103482805 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.28e-24
Identity = 55/69 (79.71%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MAVVANKIPF-GVFIGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALV 60
          MAVVA KIPF G+   V  VL  L PACAQSL+PAQPPA SDGTSIDQGIAY LMLLALV
Sbjct: 1  MAVVACKIPFSGILFVVALVLTRLSPACAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60

Query: 61 LTYIIHSAD 68
          LTYIIHSAD
Sbjct: 61 LTYIIHSAD 69

[Close]

BLAST of Csor.00g275350 vs. ExPASy TrEMBL
Match: A0A0A0KK44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151510 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.10e-22
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MAVVANKIPFGVFIGVVFVLAMLLP----ACAQSLAPAQPPAASDGTSIDQGIAYVLMLL 60
          MAVVA K+PFG   G++FV+A++L     A AQSL+PAQPPA  DGTSIDQGIAYVLMLL
Sbjct: 1  MAVVACKVPFG---GILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLL 60

Query: 61 ALVLTYIIHSADLSIS 72
          ALVLTYIIHSADL +S
Sbjct: 61 ALVLTYIIHSADLYVS 73

[Close]

BLAST of Csor.00g275350 vs. ExPASy TrEMBL
Match: A0A6J1K4A3 (arabinogalactan peptide 22-like OS=Cucurbita maxima OX=3661 GN=LOC111491553 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.71e-22
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 7  KIPFGVFIGVVFVLAMLLPACAQ--SLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYII 66
          K+P+GV + V FVLAML PA A   SL+PAQPP ASDGTS+DQGIAYVLMLLAL+LTYII
Sbjct: 8  KVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYII 67

Query: 67 HSADLSIS 72
          H A+L IS
Sbjct: 68 HLAELPIS 75

[Close]

BLAST of Csor.00g275350 vs. ExPASy TrEMBL
Match: A0A6J1CXM0 (arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111015367 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.77e-18
Identity = 50/76 (65.79%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 4  VANKIPFGVFIGVV--FVLAMLLPACA----QSLAPAQPPAASDGTSIDQGIAYVLMLLA 63
          V N +P G+ + V   FVL   LP  A    +S++PAQP A SDGTSIDQGIAY LMLLA
Sbjct: 5  VRNYLPLGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLA 64

Query: 64 LVLTYIIHSADLSISF 73
          LVLTYIIHSADLSISF
Sbjct: 65 LVLTYIIHSADLSISF 80

[Close]

BLAST of Csor.00g275350 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-10
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 18 FVLAMLLP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF 74
          FV A++L  A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S S+
Sbjct: 15 FVFAVILSLAGAQSLAPA-PAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSY 70

[Close]

BLAST of Csor.00g275350 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-10
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 6  NKIPFGVFIGVVFVLAMLLP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYII 65
          +++ FGV   V  + A+LLP A AQS APA P   SDGT+IDQGIAYVLML+ALVLTY+I
Sbjct: 4  SRLFFGVSTIVSIIFAILLPMAHAQSAAPA-PAPTSDGTTIDQGIAYVLMLVALVLTYLI 63

[Close]

BLAST of Csor.00g275350 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 60.5 bits (145), Expect = 6.7e-10
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 4  VANKIPFGVFIGVVFVLAMLLP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTY 63
          +A++    V     FV A++ P A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY
Sbjct: 1  MASRNSVAVIALFAFVFAVISPFAGAQSLAPA-PSPTSDGTSIDQGIAYLLMVVALVLTY 60

Query: 64 IIHSADLSIS 73
          +IH  D S S
Sbjct: 61 LIHPLDASSS 69

[Close]

BLAST of Csor.00g275350 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 52.8 bits (125), Expect = 1.4e-07
Identity = 29/59 (49.15%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 7  KIPFGVFIGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH 66
          K P  +    V +  +LLP      +   P   SDGTSIDQGIAYVLM++AL LTY IH
Sbjct: 5  KFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

The following BLAST results are available for this feature:

BLAST of Csor.00g275350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82337	4.2e-09	66.67	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q8L9T8	4.2e-09	63.93	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
Q9M373	9.4e-09	57.14	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]
Q9FK16	2.0e-06	49.15	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]

BLAST of Csor.00g275350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579545.1	1.49e-38	100.00	Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7017004.1	1.23e-37	97.26	Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008437371.1	6.78e-24	79.71	PREDICTED: arabinogalactan peptide 22-like [Cucumis melo] >KAA0042697.1 arabinog...	[more]
XP_023532560.1	1.19e-22	73.91	arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]	[more]
XP_004143956.1	2.27e-22	72.37	arabinogalactan protein 41 [Cucumis sativus] >KGN50035.1 hypothetical protein Cs...	[more]

BLAST of Csor.00g275350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C2F1	3.28e-24	79.71	Arabinogalactan peptide 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3ATI9	3.28e-24	79.71	arabinogalactan peptide 22-like OS=Cucumis melo OX=3656 GN=LOC103482805 PE=4 SV=...	[more]
A0A0A0KK44	1.10e-22	72.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151510 PE=4 SV=1	[more]
A0A6J1K4A3	6.71e-22	73.53	arabinogalactan peptide 22-like OS=Cucurbita maxima OX=3661 GN=LOC111491553 PE=4...	[more]
A0A6J1CXM0	1.77e-18	65.79	arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111015367 P...	[more]

BLAST of Csor.00g275350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46330.1	3.0e-10	66.67	arabinogalactan protein 16	[more]
AT5G24105.1	3.0e-10	63.93	arabinogalactan protein 41	[more]
AT3G61640.1	6.7e-10	57.14	arabinogalactan protein 20	[more]
AT5G53250.1	1.4e-07	49.15	arabinogalactan protein 22	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 32..65 e-value: 3.6E-17 score: 61.9
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 1..72
None	No IPR available	PANTHER	PTHR33374:SF38	ARABINOGALACTAN PROTEIN 41	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g275350.m01	Csor.00g275350.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane